BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bf4dd279dffe6c35e5990e68eb25cd8e.SwissProt.fasta
2 sequences; 1,383 total letters
Query= ACIAD0145
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
Q99NG9 Keratin-associated protein 19-9b [Mus musculus] 30.8 5e-06
F4IDB2 Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING [Arabidopsis ... 32.0 1e-05
>Q99NG9 Keratin-associated protein 19-9b [Mus musculus]
Length=58
Score = 30.8 bits (68), Expect = 5e-06
Identities = 15/26 (58%), Positives = 16/26 (62%), Gaps = 0/26 (0%)
Query 71 GLGLGLGGGWGRGGWGFGPSVSVNLG 96
GLG GLGG G GG G+G S LG
Sbjct 11 GLGYGLGGFGGFGGLGYGYGSSYGLG 36
Score = 27.7 bits (60), Expect = 7e-05
Identities = 12/22 (55%), Positives = 16/22 (73%), Gaps = 0/22 (0%)
Query 69 GVGLGLGLGGGWGRGGWGFGPS 90
G+G GLG GG+G G+G+G S
Sbjct 11 GLGYGLGGFGGFGGLGYGYGSS 32
Score = 25.4 bits (54), Expect = 5e-04
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (17%)
Query 71 GLGLGLGGGWGRGGWG----FGPS 90
GLG G G +G GG+G F PS
Sbjct 24 GLGYGYGSSYGLGGYGGYGYFSPS 47
Score = 17.7 bits (34), Expect = 0.30
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 77 GGGWGRGGWGFGPSVSVNLGQS 98
G G+G GG+G + G S
Sbjct 11 GLGYGLGGFGGFGGLGYGYGSS 32
Score = 16.9 bits (32), Expect = 0.57
Identities = 7/13 (54%), Positives = 8/13 (62%), Gaps = 0/13 (0%)
Query 69 GVGLGLGLGGGWG 81
G GLG GG+G
Sbjct 30 GSSYGLGGYGGYG 42
>F4IDB2 Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING [Arabidopsis
thaliana]
Length=1325
Score = 32.0 bits (71), Expect = 1e-05
Identities = 17/58 (29%), Positives = 27/58 (47%), Gaps = 3/58 (5%)
Query 29 VKPAYVSPTQYQSLNCQQLQSEYNRIQQYIDNGVQTPKRTGVGLGLGLGGGWGRGGWG 86
++P +Y L Q LQ + Q + + +GVG+G+G+G G G G G
Sbjct 964 MQPGGQMANKYSPLQLQMLQQQQ---QAAVQKKIMMGLGSGVGMGMGMGMGMGMGSMG 1018
Score = 21.6 bits (44), Expect = 0.034
Identities = 17/69 (25%), Positives = 30/69 (43%), Gaps = 8/69 (12%)
Query 46 QLQSEYNRIQ-QYIDNGVQTPKRTGVGLGLGLGGGWGRGGWGFGPSVSVNLGQSSETKNT 104
Q+ ++Y+ +Q Q + Q + + +GLG G G G G + + +G S +
Sbjct 969 QMANKYSPLQLQMLQQQQQAAVQKKIMMGLGSGVGMGMG-------MGMGMGMGSMGNSI 1021
Query 105 ELSRVLGQQ 113
LG Q
Sbjct 1022 AGLGALGNQ 1030
Score = 16.9 bits (32), Expect = 1.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 0/28 (0%)
Query 36 PTQYQSLNCQQLQSEYNRIQQYIDNGVQ 63
P Q Q + QQLQ ++ Q + Q
Sbjct 1171 PQQQQLQHQQQLQQPMSQPSQQLAQSPQ 1198
Score = 16.2 bits (30), Expect = 1.9
Identities = 6/14 (43%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 95 LGQSSETKNTELSR 108
LG+S + NT + R
Sbjct 415 LGRSIQYPNTSIQR 428
Score = 14.6 bits (26), Expect = 6.1
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query 90 SVSVNLGQSSE---TKNTELSRVLGQQ 113
S +VN GQ E K + SR + Q
Sbjct 509 SWNVNPGQQIEKEPKKEEQFSRRISAQ 535
Score = 14.6 bits (26), Expect = 6.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query 33 YVSPTQYQSLNCQQLQSEYNRIQQYIDNGVQTP 65
Y++ Q Q QQLQ + + Q +Q P
Sbjct 1157 YMNQQQQQ----QQLQQQPQQQQLQHQQQLQQP 1185
Lambda K H a alpha
0.318 0.135 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 138705
Database: bf4dd279dffe6c35e5990e68eb25cd8e.SwissProt.fasta
Posted date: May 8, 2024 7:53 AM
Number of letters in database: 1,383
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
