BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 81be48c49019460b8da8dea3f92762f5.SwissProt.fasta
           3 sequences; 381 total letters



Query= ACIAD0150

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P44293 Uncharacterized protein HI_1709 [Haemophilus influenzae (s...  68.2    2e-20
P0ADU5 Protein YgiW [Escherichia coli (strain K12)]                   60.1    3e-17
P0ADU6 Protein YgiW [Escherichia coli O157:H7]                        60.1    3e-17


>P44293 Uncharacterized protein HI_1709 [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=121

 Score = 68.2 bits (165),  Expect = 2e-20
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 0/121 (0%)

Query  1    MRKLIFSTSVVATVVLSSSAFAGKDDHLIVQEAAKNVVNVQQITKLKDETGVTLTGQITK  60
            M+K   +T        + + F G +     Q+AA   ++V+Q     D + +TL G IT+
Sbjct  1    MKKFALATIFALATTSAFAGFNGNNSQGGFQQAAPAAISVKQALSAADNSMITLVGNITQ  60

Query  61   HIKSDHYEFKDTTGVISLEIDDDLWRAVGLKVGDHVRAVGEVDTHRYKPTDIEVVKIEKI  120
             I  D + F D TG I +EI   +W  + +   D V+  G++D   ++  +++V++IEK 
Sbjct  61   QIDDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLDNEVFEKAELDVLRIEKA  120

Query  121  Q  121
            +
Sbjct  121  E  121


>P0ADU5 Protein YgiW [Escherichia coli (strain K12)]
Length=130

 Score = 60.1 bits (144),  Expect = 3e-17
 Identities = 32/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query  36   NVVNVQQITKLKDETGVTLTGQITKHIKSDHYEFKDTTGVISLEIDDDLWRAVGLKVGDH  95
            +V  V+    L+D+T VTL G I + I  D Y FKD +G I+++ID   W  V +   D 
Sbjct  45   SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDT  104

Query  96   VRAVGEVDTHRYKPTDIEVVKIEKI  120
            V   GEVD   +   +I+V +I K+
Sbjct  105  VEIQGEVDKD-WNSVEIDVKQIRKV  128


>P0ADU6 Protein YgiW [Escherichia coli O157:H7]
Length=130

 Score = 60.1 bits (144),  Expect = 3e-17
 Identities = 32/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query  36   NVVNVQQITKLKDETGVTLTGQITKHIKSDHYEFKDTTGVISLEIDDDLWRAVGLKVGDH  95
            +V  V+    L+D+T VTL G I + I  D Y FKD +G I+++ID   W  V +   D 
Sbjct  45   SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDT  104

Query  96   VRAVGEVDTHRYKPTDIEVVKIEKI  120
            V   GEVD   +   +I+V +I K+
Sbjct  105  VEIQGEVDKD-WNSVEIDVKQIRKV  128



Lambda      K        H        a         alpha
   0.321    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 32436


  Database: 81be48c49019460b8da8dea3f92762f5.SwissProt.fasta
    Posted date:  May 19, 2024  7:24 PM
  Number of letters in database: 381
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40