BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0391d6a878eef54825657d40ba90b6bc.SwissProt.fasta
6 sequences; 1,882 total letters
Query= ACIAD0154
Length=176
Score E
Sequences producing significant alignments: (Bits) Value
P64589 Uncharacterized protein YqjI [Shigella flexneri] 105 1e-32
P64588 Transcriptional regulator YqjI [Escherichia coli (strain K... 105 1e-32
C0H3S6 Putative DNA-binding protein YwzG [Bacillus subtilis (stra... 52.8 3e-13
P39044 Uncharacterized protein X [Lysinibacillus sphaericus] 50.4 2e-12
I6X7F9 Transcriptional regulator Rv3488 [Mycobacterium tuberculos... 44.3 3e-10
Q8NB25 Protein FAM184A [Homo sapiens] 33.5 9e-06
>P64589 Uncharacterized protein YqjI [Shigella flexneri]
Length=207
Score = 105 bits (263), Expect = 1e-32
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query 8 HQPEQDLQHREHHHSGRRGRLFEAGRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPS 67
H+ Q R GRR R F G ++L++L ++ + HGYE+IK I +L YTPS
Sbjct 37 HEHGQCCGGRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPS 96
Query 68 AGTIYPTLTNLEEMNFISLQDAE--RKQYQVTQLGEAYMQEQQGKLDELLEKLRLRREIH 125
G IYPTL L+E + I++++ E +KQ +T+ G +++E + +++ + E+++ R
Sbjct 97 PGVIYPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGA 156
Query 126 NNDQLIEIHRAMENLKTALRLKLNTADLQQEQIYQIAEKIDQAAIAIGRL 175
Q ++ RA++N K L L++N +D+ QI +I ID+AA I +L
Sbjct 157 ALRQNPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQL 206
>P64588 Transcriptional regulator YqjI [Escherichia coli (strain
K12)]
Length=207
Score = 105 bits (263), Expect = 1e-32
Identities = 58/170 (34%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query 8 HQPEQDLQHREHHHSGRRGRLFEAGRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPS 67
H+ Q R GRR R F G ++L++L ++ + HGYE+IK I +L YTPS
Sbjct 37 HEHGQCCGGRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPS 96
Query 68 AGTIYPTLTNLEEMNFISLQDAE--RKQYQVTQLGEAYMQEQQGKLDELLEKLRLRREIH 125
G IYPTL L+E + I++++ E +KQ +T+ G +++E + +++ + E+++ R
Sbjct 97 PGVIYPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGA 156
Query 126 NNDQLIEIHRAMENLKTALRLKLNTADLQQEQIYQIAEKIDQAAIAIGRL 175
Q ++ RA++N K L L++N +D+ QI +I ID+AA I +L
Sbjct 157 ALRQNPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQL 206
>C0H3S6 Putative DNA-binding protein YwzG [Bacillus subtilis (strain
168)]
Length=112
Score = 52.8 bits (125), Expect = 3e-13
Identities = 27/82 (33%), Positives = 45/82 (55%), Gaps = 6/82 (7%)
Query 32 GRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPSAGTIYPTLTNLEEMNFISL----- 86
G +LVL L+ + P +GYE++KE+ G+ GT+YP+L LE +IS
Sbjct 9 GSTVILVLTLLNERPMYGYELVKEMGSRSGNELQMKEGTLYPSLHKLERQGYISSYWEKQ 68
Query 87 -QDAERKQYQVTQLGEAYMQEQ 107
+ +RK Y++T G+ + E+
Sbjct 69 EKGPDRKYYRITDEGKEVLAER 90
>P39044 Uncharacterized protein X [Lysinibacillus sphaericus]
Length=109
Score = 50.4 bits (119), Expect = 2e-12
Identities = 29/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query 32 GRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPSAGTIYPTLTNLEEMNFISL----- 86
G + ++L LI + ++GYEI +EIS+ + + T+Y LE+ I
Sbjct 9 GHLDSIILRLILEKDRYGYEISQEISNRTNNSFQIKEATLYAVFQRLEKKEVIEAYYGDV 68
Query 87 -QDAERKQYQVTQLGEAYMQEQQGKLDELLEKLRLRRE 123
+RK Y++T LG+AY+ E + E+ E + L E
Sbjct 69 SDGGKRKYYRITSLGKAYLSELVKEWAEVKEIIDLFME 106
>I6X7F9 Transcriptional regulator Rv3488 [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=107
Score = 44.3 bits (103), Expect = 3e-10
Identities = 29/97 (30%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query 27 RLFEAGRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPSAGTIYPTLTNLEEMNFI-- 84
R F+ ++L +LH + HG + +E+S GY S GT+YPTL LE +
Sbjct 2 REFQRAAVRLHILHHAADNEVHGAWLTQELSR---HGYRVSPGTLYPTLHRLEADGLLVS 58
Query 85 ---SLQDAERKQYQVTQLGEAYMQEQQGKLDELLEKL 118
+ R+ Y+ T G A + E + L+EL ++
Sbjct 59 EQRVVDGRARRVYRATPAGRAALTEDRRALEELAREV 95
>Q8NB25 Protein FAM184A [Homo sapiens]
Length=1140
Score = 33.5 bits (75), Expect = 9e-06
Identities = 21/93 (23%), Positives = 45/93 (48%), Gaps = 0/93 (0%)
Query 75 LTNLEEMNFISLQDAERKQYQVTQLGEAYMQEQQGKLDELLEKLRLRREIHNNDQLIEIH 134
+T L E + +L++ K + + + + KL LE+ + +++ + ++
Sbjct 472 VTQLNEAHSKTLEELAWKHHMAIEAVHSNAIRDKKKLQMDLEEQHNKDKLNLEEDKNQLQ 531
Query 135 RAMENLKTALRLKLNTADLQQEQIYQIAEKIDQ 167
+ +ENLK L KLNTA+ + + + K +Q
Sbjct 532 QELENLKEVLEDKLNTANQEIGHLQDMVRKSEQ 564
Score = 23.1 bits (48), Expect = 0.022
Identities = 38/166 (23%), Positives = 70/166 (42%), Gaps = 23/166 (14%)
Query 4 RSSHHQPEQDLQHREHHHSGRRGRLFEAGRMKLLVLHL--IQQSPKHGYEIIKEISDLVG 61
+++H + Q+L + HS + G+ K LH ++ K E+ E L+
Sbjct 191 QAAHRREIQELLKSQQDHSASVNK----GQEKAEELHRMEVESLNKMLEELRLERKKLIE 246
Query 62 D--GYTPSAGTIYP----TLTNLEEMNFISLQDAERKQYQVT---QLGEAYMQEQQGKLD 112
D G A + Y TL + SLQ ++ K+ + Q EA +++ GKL
Sbjct 247 DYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKEFQGQEAILRKTIGKLK 306
Query 113 ELLEKLRLRREIHNNDQLIEIHRAMENLKTALRLKLNTADLQQEQI 158
L+ ++ D+ + + L+TAL + N + Q+Q+
Sbjct 307 TELQMVQ--------DEAGSLLDKCQKLQTALAIAENNVQVLQKQL 344
Score = 22.3 bits (46), Expect = 0.039
Identities = 36/175 (21%), Positives = 70/175 (40%), Gaps = 24/175 (14%)
Query 17 REHHHSGRRGRLFEAGRMKLLVLHLIQQSPKHGYEIIKEISDLVGDGYTPSAGTIYPTLT 76
++H++ G + + L H + S + ++ K+I+ L Y + T
Sbjct 9 QQHYYGGSAAKFAPSPATAQLAGHSMDYSQEMHLKMSKKIAQLTKVIYALN------TKN 62
Query 77 NLEEMNFISLQDAERKQYQVTQLGEAYMQEQQGKLDELLEKLRLRREIHNNDQLIEIHRA 136
+ E +L+DA ++ Q L E + Q K ++ E+L LRR+I + +E H
Sbjct 63 DEHESAIQALKDAHEEEIQQI-LAETREKILQYK-SKVTEELDLRRKIQVLESSLEDHIK 120
Query 137 MEN--LKTALRLKLNTADLQ--------------QEQIYQIAEKIDQAAIAIGRL 175
M+ L K D+Q ++ +I K ++ + G+L
Sbjct 121 MKQQALTEFEAYKHRVEDMQLCAEAQHVQRIVTMSREVEEIRRKFEEKLRSFGQL 175
Score = 22.3 bits (46), Expect = 0.039
Identities = 7/12 (58%), Positives = 11/12 (92%), Gaps = 0/12 (0%)
Query 11 EQDLQHREHHHS 22
+++L+HREHH S
Sbjct 873 QEELRHREHHIS 884
Score = 20.0 bits (40), Expect = 0.22
Identities = 16/73 (22%), Positives = 31/73 (42%), Gaps = 8/73 (11%)
Query 85 SLQDAERKQYQVTQLGEAYMQEQQGKLDELLEKLRLRREIHNNDQLIEIHRAMENLKTAL 144
SL+D + + Q EAY +E ++L E + +++ + R +E ++
Sbjct 114 SLEDHIKMKQQALTEFEAYKHR--------VEDMQLCAEAQHVQRIVTMSREVEEIRRKF 165
Query 145 RLKLNTADLQQEQ 157
KL + Q Q
Sbjct 166 EEKLRSFGQLQVQ 178
Score = 20.0 bits (40), Expect = 0.22
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query 90 ERKQYQVTQLGEAY------MQEQQGKLDELLEKLRLRREIHNNDQLIEIHR-AMENLKT 142
E+ Q + L EA+ M+E++ K LE ++ L + HR +ME +
Sbjct 738 EQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALENHLQQKHSAELQSLKDAHRESMEGFRI 797
Query 143 ALRLKLNTADLQQE 156
+ +L T + E
Sbjct 798 EMEQELQTLRFELE 811
Score = 19.2 bits (38), Expect = 0.38
Identities = 14/54 (26%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query 108 QGKLDELLEKLRLRREIHNNDQLIEIHRAMENLKTALRLKLNTADLQQEQIYQI 161
Q L+E+ EK +R + Q+I +AM + + KL ++ + YQ+
Sbjct 970 QVSLEEMEEKYLMRESKPEDIQMITELKAMLTERDQIIKKL----IEDNKFYQL 1019
Score = 18.1 bits (35), Expect = 0.89
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 0/21 (0%)
Query 2 RHRSSHHQPEQDLQHREHHHS 22
R R + E + QH++ H S
Sbjct 726 RQRLTQELEELEEQHQQRHKS 746
Lambda K H a alpha
0.321 0.136 0.383 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 235752
Database: 0391d6a878eef54825657d40ba90b6bc.SwissProt.fasta
Posted date: May 31, 2024 4:19 AM
Number of letters in database: 1,882
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
