BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 0306227b1e7d82475bff097d05587a1f.SwissProt.fasta
           6 sequences; 1,541 total letters



Query= ACIAD0176

Length=163
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AC52 Zinc uptake regulation protein [Shigella flexneri]             112     4e-36
P0AC51 Zinc uptake regulation protein [Escherichia coli (strain K...  112     4e-36
P0A3E5 Ferric uptake regulation protein [Bordetella parapertussis...  34.7    1e-06
P0A3E4 Ferric uptake regulation protein [Bordetella bronchiseptic...  34.7    1e-06
P0A3E3 Ferric uptake regulation protein [Bordetella pertussis (st...  34.7    1e-06
Q03653 Protein EFR3 [Saccharomyces cerevisiae (strain ATCC 204508...  34.3    3e-06


>P0AC52 Zinc uptake regulation protein [Shigella flexneri]
Length=171

 Score = 112 bits (281),  Expect = 4e-36
 Identities = 59/138 (43%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query  25   LAEAESLCAATGARLTPLRKEVLGLILNASGPVGAYDLLAKIKSDTDRPAAPPTVYRTLD  84
            LA+AE +CA    RLTP R EVL L+    G + AYDLL  ++ + +  A PPTVYR LD
Sbjct  10   LAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLR-EAEPQAKPPTVYRALD  68

Query  85   FLLEKGLIHRLTSINAYIPC-CHPREGHQAAFLICTECHVVKEASSEGLMNQLNQLAKSD  143
            FLLE+G +H++ S N+Y+ C    +  H +A  IC  C  VKE  +EG+ + ++ LA   
Sbjct  69   FLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKM  128

Query  144  QFIAQHTIIEISGKCQQC  161
             F  +H +IE  G C  C
Sbjct  129  GFALRHNVIEAHGLCAAC  146


>P0AC51 Zinc uptake regulation protein [Escherichia coli (strain 
K12)]
Length=171

 Score = 112 bits (281),  Expect = 4e-36
 Identities = 59/138 (43%), Positives = 82/138 (59%), Gaps = 2/138 (1%)

Query  25   LAEAESLCAATGARLTPLRKEVLGLILNASGPVGAYDLLAKIKSDTDRPAAPPTVYRTLD  84
            LA+AE +CA    RLTP R EVL L+    G + AYDLL  ++ + +  A PPTVYR LD
Sbjct  10   LAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISAYDLLDLLR-EAEPQAKPPTVYRALD  68

Query  85   FLLEKGLIHRLTSINAYIPC-CHPREGHQAAFLICTECHVVKEASSEGLMNQLNQLAKSD  143
            FLLE+G +H++ S N+Y+ C    +  H +A  IC  C  VKE  +EG+ + ++ LA   
Sbjct  69   FLLEQGFVHKVESTNSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKM  128

Query  144  QFIAQHTIIEISGKCQQC  161
             F  +H +IE  G C  C
Sbjct  129  GFALRHNVIEAHGLCAAC  146


>P0A3E5 Ferric uptake regulation protein [Bordetella parapertussis 
(strain 12822 / ATCC BAA-587 / NCTC 13253)]
Length=139

 Score = 34.7 bits (78),  Expect = 1e-06
 Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)

Query  78   TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN  137
            TVYR L    + G++ R +  +         +G     LICT C  V E S   +  +  
Sbjct  53   TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY  111

Query  138  QLAKSDQFIAQHTIIEISGKCQQCK  162
            ++AK + F+ +   + + G C  C+
Sbjct  112  KVAKDNGFVLESHAMVLYGICGNCQ  136


>P0A3E4 Ferric uptake regulation protein [Bordetella bronchiseptica 
(strain ATCC BAA-588 / NCTC 13252 / RB50)]
Length=139

 Score = 34.7 bits (78),  Expect = 1e-06
 Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)

Query  78   TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN  137
            TVYR L    + G++ R +  +         +G     LICT C  V E S   +  +  
Sbjct  53   TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY  111

Query  138  QLAKSDQFIAQHTIIEISGKCQQCK  162
            ++AK + F+ +   + + G C  C+
Sbjct  112  KVAKDNGFVLESHAMVLYGICGNCQ  136


>P0A3E3 Ferric uptake regulation protein [Bordetella pertussis 
(strain Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=139

 Score = 34.7 bits (78),  Expect = 1e-06
 Identities = 22/85 (26%), Positives = 38/85 (45%), Gaps = 1/85 (1%)

Query  78   TVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICTECHVVKEASSEGLMNQLN  137
            TVYR L    + G++ R +  +         +G     LICT C  V E S   +  +  
Sbjct  53   TVYRVLTQFEQAGILTR-SQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDPDIEKRQY  111

Query  138  QLAKSDQFIAQHTIIEISGKCQQCK  162
            ++AK + F+ +   + + G C  C+
Sbjct  112  KVAKDNGFVLESHAMVLYGICGNCQ  136


>Q03653 Protein EFR3 [Saccharomyces cerevisiae (strain ATCC 204508 
/ S288c)]
Length=782

 Score = 34.3 bits (77),  Expect = 3e-06
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query  60   YDLLAKIKSDTDRPAAPPTVYRTLDFLLEKGLIHRLTSINAYIPCCHPREGHQAAFLICT  119
            Y+LL K+KSDT +      V   +DFL+E  +     S+  +I   H  + H    +IC 
Sbjct  383  YELLLKLKSDTVKDVEKNAVVEDIDFLVEH-ITQPSISLELFIDLAHYMKNH----IICL  437

Query  120  ECHVVKEASSEGLMNQLNQLAK  141
               V  E  S  L ++L  L +
Sbjct  438  FNIVETEVPSSILFSKLYSLLR  459



Lambda      K        H        a         alpha
   0.324    0.135    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174590


  Database: 0306227b1e7d82475bff097d05587a1f.SwissProt.fasta
    Posted date:  May 9, 2024  11:52 AM
  Number of letters in database: 1,541
  Number of sequences in database:  6



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40