BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 412996d19ad46b50459416c4b0609091.SwissProt.fasta
3 sequences; 396 total letters
Query= ACIAD0178
Length=133
Score E
Sequences producing significant alignments: (Bits) Value
P0A104 ATP synthase protein I [Pseudomonas putida] 90.9 6e-29
P0A103 ATP synthase protein I [Pseudomonas putida (strain ATCC 47... 90.9 6e-29
Q9HT13 ATP synthase protein I [Pseudomonas aeruginosa (strain ATC... 85.1 8e-27
>P0A104 ATP synthase protein I [Pseudomonas putida]
Length=135
Score = 90.9 bits (224), Expect = 6e-29
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (1%)
Query 4 PSRLIDRRLAKAIVFL-QALMIPVSALVAWGIKDSTAALSAALGALVCWIAYCYFSWQSF 62
P+RL R A V L Q +++ ++ LV W K S + S G L+ W+ YF+W++F
Sbjct 6 PNRLPFHRWAVFPVLLAQFVVLLLATLVLWQWKGSVSGYSGLCGGLIAWLPNVYFAWKAF 65
Query 63 RTSGARASRQVLSNMYRGMLGKFAVVIVGFILILSNVKPLSPVALFCGFILVQTMSWVAP 122
R SGARA++ ++ + Y G GK + V F L + VKPL+P+A+F F+L +SW AP
Sbjct 66 RFSGARAAQAIVKSFYAGEAGKMILTAVLFALTFAGVKPLAPLAVFGVFVLTLLVSWFAP 125
Query 123 FWVSRLQKR 131
+++ R
Sbjct 126 LLMNKRLSR 134
>P0A103 ATP synthase protein I [Pseudomonas putida (strain ATCC
47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=135
Score = 90.9 bits (224), Expect = 6e-29
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (1%)
Query 4 PSRLIDRRLAKAIVFL-QALMIPVSALVAWGIKDSTAALSAALGALVCWIAYCYFSWQSF 62
P+RL R A V L Q +++ ++ LV W K S + S G L+ W+ YF+W++F
Sbjct 6 PNRLPFHRWAVFPVLLAQFVVLLLATLVLWQWKGSVSGYSGLCGGLIAWLPNVYFAWKAF 65
Query 63 RTSGARASRQVLSNMYRGMLGKFAVVIVGFILILSNVKPLSPVALFCGFILVQTMSWVAP 122
R SGARA++ ++ + Y G GK + V F L + VKPL+P+A+F F+L +SW AP
Sbjct 66 RFSGARAAQAIVKSFYAGEAGKMILTAVLFALTFAGVKPLAPLAVFGVFVLTLLVSWFAP 125
Query 123 FWVSRLQKR 131
+++ R
Sbjct 126 LLMNKRLSR 134
>Q9HT13 ATP synthase protein I [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=126
Score = 85.1 bits (209), Expect = 8e-27
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 4/124 (3%)
Query 4 PSRLIDRRLAKAIVFLQALMIPVSALVAWGIKDSTAALSAALGALVCWIAYCYFSWQSFR 63
PSRL RL + +Q +++ V+A+ W A S LG ++ W+ CYF++++FR
Sbjct 2 PSRLPAFRL----LLVQLVVVLVAAISLWISWGPVAGYSGLLGGMIAWLPNCYFAYKAFR 57
Query 64 TSGARASRQVLSNMYRGMLGKFAVVIVGFILILSNVKPLSPVALFCGFILVQTMSWVAPF 123
SGARA+R+++ + Y G GK + V F L + VKPL ALF ++L +SW AP
Sbjct 58 FSGARAAREIVRSFYAGEAGKLILTAVLFALAFAGVKPLMAPALFGVYLLTLMVSWCAPL 117
Query 124 WVSR 127
+ +
Sbjct 118 LMGK 121
Lambda K H a alpha
0.336 0.140 0.454 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 36630
Database: 412996d19ad46b50459416c4b0609091.SwissProt.fasta
Posted date: May 19, 2024 10:10 PM
Number of letters in database: 396
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
