BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 549ba65a04b971ba6151222f209ee10f.SwissProt.fasta
14 sequences; 4,895 total letters
Query= ACIAD0207
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
D4GPW1 Putative glucose ABC transporter permease protein TsgC13 [... 233 1e-78
A2RKA5 Nucleoside ABC transporter permease protein NupC [Lactococ... 166 7e-53
O05255 Guanosine ABC transporter permease protein NupQ [Bacillus ... 157 3e-49
P75514 Uncharacterized protein MG121 homolog [Mycoplasma pneumoni... 82.8 2e-21
P47367 Uncharacterized protein MG121 [Mycoplasma genitalium (stra... 80.9 7e-21
D4GPW2 Glucose ABC transporter permease protein TsgB13 [Haloferax... 68.2 3e-16
O83324 Probable riboflavin import permease protein RfuD [Treponem... 67.4 4e-16
O05254 Guanosine ABC transporter permease protein NupP [Bacillus ... 67.4 5e-16
P47366 Uncharacterized protein MG120 [Mycoplasma genitalium (stra... 62.8 2e-14
A2RKA6 Nucleoside ABC transporter permease protein NupB [Lactococ... 59.3 2e-13
P77672 Autoinducer 2 import system permease protein LsrC [Escheri... 53.9 1e-11
Q8ZKQ3 Autoinducer 2 import system permease protein LsrC [Salmone... 53.9 1e-11
Q1JUP6 L-arabinose ABC transporter permease protein AraH [Azospir... 51.6 8e-11
Q9F9B1 Fructose import permease protein FrcC [Rhizobium meliloti] 46.2 4e-09
>D4GPW1 Putative glucose ABC transporter permease protein TsgC13
[Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879
/ NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)]
Length=329
Score = 233 bits (594), Expect = 1e-78
Identities = 128/319 (40%), Positives = 186/319 (58%), Gaps = 23/319 (7%)
Query 7 LLAGTLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTGLGPAAGLLA 66
LL T+ AAT L+ AG+GEL+ ER GV+NLGVEGMML+GA+ GF A TG G
Sbjct 7 LLNATVQAATVLLLAGLGELISERAGVLNLGVEGMMLVGALGGFVVTAVTG-NYWLGFGV 65
Query 67 GAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAMN--L 124
G GM A + A L +SL +NQ G+ LT+ G GL+ F G +V S+ G M +
Sbjct 66 GIACGMALAAVHAFLCISLKSNQVISGVMLTLLGTGLTTFFGSGWVQESITGFPQMTFPI 125
Query 125 LG--LQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHAMGY 182
+G L +P++G F YL+++ ++W+ L ++ LGL + AVGE PE A MG
Sbjct 126 VGRYLVHLPLVGEAFFRSTATDYLALLAVPVVWFFLYRSNLGLEIIAVGEDPEMADTMGV 185
Query 183 PVLLIRYGAVLFGGAMAGVGGAFLSTVYTPLWVENMVAGRGWIAIALVVFAAWKPARLMI 242
PV RY AV+ GG AG GA LS ++ LWV M GRGWIA+ALVVFA W+P+R+++
Sbjct 186 PVFKFRYLAVIIGGGFAGAAGAHLSLAFSQLWVPGMTVGRGWIAVALVVFAQWRPSRMLV 245
Query 243 GAYLFGGVTILQFQAQALGIDIP------------------VEFLAALPYVATIIVLVFI 284
GAYLFG + LQ ++Q+L + + + ++ PY+ TI VL +
Sbjct 246 GAYLFGLLDALQLRSQSLSLALDPNAPLAGVLNPLVNTLMNPQIMSTYPYLTTIAVLSYA 305
Query 285 SRDRKLLQMNLPASLGKSF 303
+ +++ +P++L +S+
Sbjct 306 VIRTESVRLAVPSALLQSY 324
>A2RKA5 Nucleoside ABC transporter permease protein NupC [Lactococcus
lactis subsp. cremoris (strain MG1363)]
Length=317
Score = 166 bits (421), Expect = 7e-53
Identities = 102/287 (36%), Positives = 158/287 (55%), Gaps = 12/287 (4%)
Query 7 LLAGTLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTG-----LGPA 61
++A L +TPLIF +G + ER G++N+G+EG+M IGA + F TT + P
Sbjct 10 IVANMLIYSTPLIFTSIGGVFSERGGIVNVGLEGIMTIGAFSSVVFNLTTAGMFGSMTPW 69
Query 62 AGLLAGAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSA 121
+L GA+ G L + + AV ++L A+ G L + L F+ Q + ++
Sbjct 70 LSILFGALIGALFSSLHAVATVNLRADHIVSGTVLNLMAPALGVFLLQVFYQQGQININE 129
Query 122 M----NLLGLQDIPVIGPILFHQNYVV-YLSIITFLLIWWILAKTKLGLLLKAVGESPES 176
N+ L +IPVIG I F Q + +L+I+ +L W++L KT+ GL L++VGE+P++
Sbjct 130 QIGYWNVPLLSNIPVIGKIFFTQTSLPGFLAIVVAILAWYVLFKTRFGLRLRSVGENPQA 189
Query 177 AHAMGYPVLLIRYGAVLFGGAMAGVGGAFLSTVYTPLWVENMVAGRGWIAIALVVFAAWK 236
A +G V R+ VL G + GVGGA + + + + +AG+G+I++A ++F W
Sbjct 190 ADTLGINVYAYRWAGVLLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISLAAMIFGKWN 249
Query 237 PARLMIGAYLFGGVTILQ-FQAQALGI-DIPVEFLAALPYVATIIVL 281
P M+ + LFG T L Q GI +IP FL PYV TIIVL
Sbjct 250 PIGAMLSSLLFGLFTSLAVVGGQIPGIKEIPSSFLQMAPYVFTIIVL 296
>O05255 Guanosine ABC transporter permease protein NupQ [Bacillus
subtilis (strain 168)]
Length=319
Score = 157 bits (397), Expect = 3e-49
Identities = 105/303 (35%), Positives = 154/303 (51%), Gaps = 18/303 (6%)
Query 2 IDLVPLLA----GTLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTG 57
+D+V +L+ TL A PLI +G + ER+GV+N+G+EG+M+IGA F G
Sbjct 1 MDIVQILSIIVPATLVYAAPLILTALGGVFSERSGVVNIGLEGLMIIGAFTSVLFNLFFG 60
Query 58 --LGPAA---GLLAGAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFV----- 107
LG AA LLA AG L +LI A A+S A+Q G+A+ + +G + F+
Sbjct 61 QELGAAAPWLSLLAAMAAGALFSLIHAAAAISFRADQTVSGVAINMLALGATLFIVKLIY 120
Query 108 GQHYVSTSLAGLSAMNLLGLQDIPVIGPILFHQNYVVYLSIITFLLI-WWILAKTKLGLL 166
G+ + GL DIPV+G I F Y + I I W+IL KT GL
Sbjct 121 GKAQTDKIPEPFYKTKIPGLGDIPVLGKIFFSDVYYTSILAIALAFISWFILFKTPFGLR 180
Query 167 LKAVGESPESAHAMGYPVLLIRYGAVLFGGAMAGVGGAFLSTVYTPLWVENMVAGRGWIA 226
+++VGE P +A MG V +RY V+ G G+GG ++ + + ++G+G+IA
Sbjct 181 IRSVGEHPMAADTMGINVYKMRYIGVMISGLFGGLGGGVYASTIALDFTHSTISGQGFIA 240
Query 227 IALVVFAAWKPARLMIGAYLFGGVTILQFQAQALGI--DIPVEFLAALPYVATIIVLV-F 283
+A +VF W P + A FG L L + DIP ++ PY+ TI+ L F
Sbjct 241 LAALVFGKWHPIGALGAALFFGFAQSLSIIGSLLPLFKDIPNVYMLMAPYILTILALTGF 300
Query 284 ISR 286
I R
Sbjct 301 IGR 303
>P75514 Uncharacterized protein MG121 homolog [Mycoplasma pneumoniae
(strain ATCC 29342 / M129 / Subtype 1)]
Length=311
Score = 82.8 bits (203), Expect = 2e-21
Identities = 72/310 (23%), Positives = 138/310 (45%), Gaps = 36/310 (12%)
Query 12 LAAATPLIFAGMGELVVERTGVINLGVEGMMLIG----AIAGFAFCATTGLGPAAGLLA- 66
L A L+ A + + ER G++N+ + G M+ G ++ +AF + LA
Sbjct 15 LFVAPALLLAVLSGYLSERVGIVNIAINGGMVFGGMFLSLMSYAFVPNANDSAPSWSLAI 74
Query 67 ----GAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAM 122
+ +F + A+ L A+ G + + G G++ FV Q+ A
Sbjct 75 SIPLSVIFASAVGFLFGIAAIKLKADHVIVGTGVNLLGTGINFFVAQN----------AR 124
Query 123 NLLGLQDIPV------IGPILFHQNYVVY-LSIITFLLIWWILAKTKLGLLLKAVGESPE 175
+LL D+ V G + + ++ +II LL+W+++ TK GL +AVGE+P
Sbjct 125 SLLNDTDLRVRYSFVRTGNSVSIEGIAIFAFAIIFVLLVWYLMNFTKTGLRYRAVGENPN 184
Query 176 SAHAMGYPVLLIRYGAVLFGGAMAGVGG-AFLSTVYTPLWVENMVAGRGWIAIALVVFAA 234
G V ++ V+ +A + G F + P + V+G G+IAIA+++ +
Sbjct 185 VIDTQGISVYKYQWFGVMASTMVAALAGCCFALSPQVPSFSSGDVSGFGFIAIAIMIISM 244
Query 235 WKPARLMIGAYLFGGVTILQFQAQALGIDIPVEFLAALPYVATIIVLVFISRDRKLLQMN 294
W+ ++ + LF +L +G L +P++ +++V++ +N
Sbjct 245 WRIIPSIVISPLFALAYVL--TTGVVGNANNTYLLRTIPFIISLLVMMVFG------YLN 296
Query 295 L-PASLGKSF 303
+ P ++GK F
Sbjct 297 VGPKNVGKHF 306
>P47367 Uncharacterized protein MG121 [Mycoplasma genitalium (strain
ATCC 33530 / DSM 19775 / NCTC 10195 / G37)]
Length=306
Score = 80.9 bits (198), Expect = 7e-21
Identities = 73/303 (24%), Positives = 138/303 (46%), Gaps = 29/303 (10%)
Query 15 ATPLIFAGMGELVVERTGVINLGVEGMMLIGAI--AGFAFCATTGLGPAAGLLAGAVAGM 72
A L+ A + + ER G+IN+ + G M+ G + A ++ T L +A + +
Sbjct 14 APALLLAVLSGYLAERVGIINIAINGGMVFGGLFMALLSYGFTNNLNQSAPSWSLFITIP 73
Query 73 LSAL-------IFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVST-SLAGLSAMNL 124
LS L +FA+ A+ L A+ G + + G++ F+ Q+ S S L L
Sbjct 74 LSVLFSSVIGCLFALAAVKLRADHVIVGTGINLLASGITLFISQNAASLFSDTTLRVRYL 133
Query 125 LGLQ---DIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHAMG 181
+Q I IG +F S++ +W++++ TK GL +AVGE+P G
Sbjct 134 FPIQTTVSIEAIGVFVF--------SLLLIGFVWYLMSFTKTGLRYRAVGENPNVIDTQG 185
Query 182 YPVLLIRYGAVLFGGAMAGVGGA-FLSTVYTPLWVENMVAGRGWIAIALVVFAAWKPARL 240
V ++ + +AG+ G+ F+ +V + V G G+IAIA+++ + W+
Sbjct 186 ISVYKYQWIGAICSMMVAGLSGSLFVLSVSNFPFNSGDVNGLGFIAIAIMIISMWRIIPS 245
Query 241 MIGAYLFGGVTILQFQAQALGIDIPVEFLAALPYVATIIVLVFISRDRKLLQMNLPASLG 300
+ +F + F +G + L +P++ +++V++ L + P ++G
Sbjct 246 IFIGLIFAYAYV--FTNSQIGSNSNSYLLRTIPFIISLLVMLLFG----FLNV-APKNIG 298
Query 301 KSF 303
K F
Sbjct 299 KHF 301
>D4GPW2 Glucose ABC transporter permease protein TsgB13 [Haloferax
volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC
14742 / NCIMB 2012 / VKM B-1768 / DS2)]
Length=380
Score = 68.2 bits (165), Expect = 3e-16
Identities = 74/296 (25%), Positives = 121/296 (41%), Gaps = 29/296 (10%)
Query 8 LAGTLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTGLGPAAGL--- 64
L L A PLI AG+ + + G+ N+G EG +L+GA+AG L PA L
Sbjct 62 LTEVLVRAVPLILAGLAVYLPLKAGLFNIGAEGQLLLGALAGTWVAVNVSL-PAVALLPL 120
Query 65 --LAGAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFV---------GQHYVS 113
LA VAG A I A L N+ L LT L +++ G S
Sbjct 121 MFLAACVAGAFWAGIPAWLRAKWDVNEIITSLLLTFVAQELQSYLLRGPMQGGTGNFPQS 180
Query 114 TSLAGLSAMNLL-----GLQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLK 168
+ + + L G + IP+ + H +V ++ + + ++ KT+LG +
Sbjct 181 ARFSDAATLPPLAGLVPGGESIPLFADV--HAGLLVAVAAVVATYV--VMTKTRLGFEVT 236
Query 169 AVGESPESAHAMGYPVLLIRYGAVLFGGAMAGVGGAFLSTVYTPLWVENMVAGRGWIAIA 228
VG + E+A G + L GGA A +GG + G G+ AI
Sbjct 237 FVGSNDEAARQAGMSRHTVYLFVFLLGGAFAALGGIAEIAGSQGRFRAAFAPGYGFTAIP 296
Query 229 LVVFAAWKPARLMIGAYLFGGVTILQFQAQALGIDIPVEFLAALPYVATIIVLVFI 284
+ + ++ + A LF V + + + +P AAL + +V++F+
Sbjct 297 IALLGRNSAVKVTL-AGLFFAVLFVGGSSVEVAFGVP----AALVEIIQALVILFL 347
>O83324 Probable riboflavin import permease protein RfuD [Treponema
pallidum (strain Nichols)]
Length=313
Score = 67.4 bits (163), Expect = 4e-16
Identities = 72/284 (25%), Positives = 109/284 (38%), Gaps = 16/284 (6%)
Query 12 LAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTGLGPAAGLLAGAVAG 71
L A PL A G L E GV+ + +EG++ + AF A GL
Sbjct 12 LHRAAPLACAAAGALATEYAGVLGIFMEGVITFSSFC-IAFFALVWGSYWGGLGITVCVV 70
Query 72 MLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAMNLLGLQDIP 131
L AV + AN G+A+ +G+SAF + + A M+ +
Sbjct 71 PLCLFFVAVGTERMRANPFLTGIAVHFSAMGMSAFGASSMFARAAASAMQMDTAA-HGVS 129
Query 132 VIGPILFHQNYV---VYLSIITFLLIWWI---LAKTKLGLLLKAVGESPESAHAMGYPVL 185
L H + ++ + + F L+W L T +G+ GE + G
Sbjct 130 FTHVSLAHTRVLPHPLWGTAVAFALVWVFHLYLYSTNVGINFMHSGEGALALQVRGTDAA 189
Query 186 LIRYGAVLFGGAMAGVGGAFLST---VYTPLWVENMVAGRGWIAIALVVFAAWKPARLMI 242
R + G A G L YTP M AGRGW A+A+V A + +
Sbjct 190 RYRMVSWAVAGVCAVCAGGLLVLRVGTYTP----QMAAGRGWTALAIVFLARKRMMWCVP 245
Query 243 GAYLFGGVTILQFQAQALGIDIPVEFLAALPYVATIIVLVFISR 286
A F G+ + Q + +P L ALPY+ +++V V R
Sbjct 246 AAIFFSGIEHMCDVLQGTHV-VPTGVLFALPYILSLVVFVCTRR 288
>O05254 Guanosine ABC transporter permease protein NupP [Bacillus
subtilis (strain 168)]
Length=348
Score = 67.4 bits (163), Expect = 5e-16
Identities = 60/282 (21%), Positives = 123/282 (44%), Gaps = 12/282 (4%)
Query 11 TLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIA----GFAFCATTGLGPAAGLLA 66
T+ TP I +G+ RTG+ N+GVEG +L+G A G AF + L+
Sbjct 54 TIRQITPYILSGLAVAFAFRTGLFNIGVEGQLLVGWTAAVWVGTAFDGPAYIHLPLALIT 113
Query 67 GAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAMNLLG 126
A AG L I +L ++ + + + ++ ++ + ++ ++
Sbjct 114 AAAAGGLWGFIPGILKARFYVHEVIVTIMMNYIALHMTNYIISNVLTDHQDKTGKIHESA 173
Query 127 LQDIPVIGPILFHQ--NYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHAMGYPV 184
P + I + + + ++++ +++W+I+ K+ G L+AVG + ++ G V
Sbjct 174 SLRSPFLEQITDYSRLHLGIIVALLAAVIMWFIINKSTKGFELRAVGFNQHASQYAGMSV 233
Query 185 LLIRYGAVLFGGAMAGVGGAFLST-VYTPLWVENMVAGRGWIAIALVVFAAWKPARLMIG 243
++L GA AG+ GA + V+ G G+ IA+ + +++
Sbjct 234 RKNIMTSMLISGAFAGLAGAMEGLGTFEYAAVKGAFTGVGFDGIAVALLGGNTAVGVVLA 293
Query 244 AYLFGGVTILQFQAQALGIDIPVEFLAALPYVATIIVLVFIS 285
A L GG+ I AL + I + + + I+++F++
Sbjct 294 ACLLGGLKI-----GALNMPIESGVPSEVVDIVIAIIILFVA 330
>P47366 Uncharacterized protein MG120 [Mycoplasma genitalium (strain
ATCC 33530 / DSM 19775 / NCTC 10195 / G37)]
Length=520
Score = 62.8 bits (151), Expect = 2e-14
Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 24/300 (8%)
Query 19 IFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCA---TTGLGPAAG-----LLAGAVA 70
I AG+ G+ N+G+ G M+ GAI GF + P G +L +
Sbjct 88 ILAGLAFSFCMSVGIFNIGISGQMMAGAIFGFLMILKVFPSSFRPGFGGQIITVLLMVIG 147
Query 71 GMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAMNLLGLQD- 129
+ A++ A L + N+ + L V +SA++ + Y+ + G + L L D
Sbjct 148 SVSVAVVVATLKIFFKVNEVVSAIMLNWIVVLISAYLVETYIKDNSGGTAQFFSLPLPDE 207
Query 130 --IPVIGPILFHQNYVVYLSI--ITFLLIWWILAKTKLGLLLKAVGESPESAHAMGYPVL 185
+ P+ ++ L I I+ +++ +L T G LK++G S + AMG+ V
Sbjct 208 FALYNFSPLTKKFGWLASLIIAFISVIIVAVVLKYTVFGHKLKSIGSSVFGSQAMGFNVR 267
Query 186 LIRYGAVLFGGAMAGVGGAFLSTVYTP--LWVENM-------VAGRGWIAIALVVFAAWK 236
++ + + G ++G+ + T T L N+ V G+ IA+ + A
Sbjct 268 KYQFLSFIISGILSGLLATVVYTASTEKVLTFNNVGDSAISAVPATGFDGIAIGLIALNN 327
Query 237 PARLMIGAYLFGGVTILQFQAQALGIDIPVEFLAALPYVATII-VLVFISRDRKLLQMNL 295
P R++I + L V I A L + L + Y A + ++V+ R L+++N+
Sbjct 328 PFRIVIVSVLIAFVNIGARPAN-LNPNTASLVLGIMMYFAALYNLMVYFKPWRYLVKLNI 386
>A2RKA6 Nucleoside ABC transporter permease protein NupB [Lactococcus
lactis subsp. cremoris (strain MG1363)]
Length=364
Score = 59.3 bits (142), Expect = 2e-13
Identities = 68/297 (23%), Positives = 120/297 (40%), Gaps = 36/297 (12%)
Query 11 TLAAATPLIFAGMGELVVERTGVINLGVEGMMLIGAIAGFAFCAT---------TGLGPA 61
TL PLI + V + G+ N+G+ G L G I+ F + L
Sbjct 54 TLQTMGPLILTALSFAVAMKVGLFNIGMSGQALAGWISSMWFALSFPDIPRLLMIPLVVI 113
Query 62 AGLLAGAVAGMLSALIFAVLALSLAANQAACGLALTIFGVGLSAFVGQHYV----STSLA 117
G++ GA G + ++ A+L S + F + + Q + +T
Sbjct 114 IGMVFGAFMGFIPGILRALLGTSEVITTIMLNYIMLFFSTFMIHSMFQKNILMDNTTDQT 173
Query 118 GLSAMN-------LLGLQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAV 170
L + N + L D + N + ++II +++ I KT LG +KAV
Sbjct 174 KLISANASFRTNWMSSLTDNSTL-------NIGLIIAIIALVIMAIIFTKTTLGFEIKAV 226
Query 171 GESPESAHAMGYPVLLIRYGAVLFGGAMAGVGGAFLSTVYTPLWVENMVA-GRGWIAIAL 229
G +P+++ G +++ GA+AG+GG Y +V + G+ +A+
Sbjct 227 GLNPDASEYAGISAKRTLILSMVVAGALAGLGGVVYGFGYMQNFVSQSASLDIGFYGMAV 286
Query 230 VVFAAWKPARLMIGAYLFGGVTILQFQAQALGID-IPVEFLAALPYVATIIVLVFIS 285
+ P ++ A LF ++LQ A + D IP E + V T ++ FI+
Sbjct 287 ALLGGNSPIGILFAALLF---SVLQTGAPGMTNDGIPPEIVK----VVTAAIIFFIA 336
Score = 21.9 bits (45), Expect = 0.26
Identities = 24/96 (25%), Positives = 41/96 (43%), Gaps = 9/96 (9%)
Query 43 LIGAIAGFAFCATTGLGPAAG-----LLAGAVAGMLSALIFAVLALSLAANQAACGLALT 97
L+GAI AF G P G + A A + + + L L A A + +
Sbjct 20 LLGAIIMLAF----GYNPIWGYEDLFISALGSARSIGETLQTMGPLILTALSFAVAMKVG 75
Query 98 IFGVGLSAFVGQHYVSTSLAGLSAMNLLGLQDIPVI 133
+F +G+S ++S+ LS ++ L IP++
Sbjct 76 LFNIGMSGQALAGWISSMWFALSFPDIPRLLMIPLV 111
>P77672 Autoinducer 2 import system permease protein LsrC [Escherichia
coli (strain K12)]
Length=342
Score = 53.9 bits (128), Expect = 1e-11
Identities = 78/300 (26%), Positives = 126/300 (42%), Gaps = 27/300 (9%)
Query 5 VPLLAGTLAAATPLIFAGMGELVVERTGVINLGVEGMM-LIGAIAGFAFCATTGLGPA-- 61
V L ++A LI MG +V T I++ V + + + G A L A
Sbjct 34 VQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACV 93
Query 62 AGLLAGAVAGMLSALIFAVLAL-SLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLS 120
A LL G +AG + ++ A L + ++ A GL I + + G ++ A L
Sbjct 94 ATLLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGI----MLLWTGGKWIEGLPAELK 149
Query 121 AMNLLGLQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHAM 180
++ P+L + + +L+II + W+LAKT G A G++ + A +
Sbjct 150 QLS----------APLLLGVSAIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQL 199
Query 181 GYPVLLIRYGAVLFGGAMAGVGG-AFLSTV-YTPLWVENMVAGRGWIAIALVVFAAWKPA 238
G IR A G MA + G F S + + P + + A L + +
Sbjct 200 GVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGS 259
Query 239 RLMIGAYLFGGVTILQFQAQALGIDIPV---EFLAALPYVATIIVLVFISRDRKLLQMNL 295
+IGA L G + Q + + + IP +F+A L +A VLVF R R L+ NL
Sbjct 260 GAIIGAVL-GAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLA---VLVFDGRLRCALERNL 315
>Q8ZKQ3 Autoinducer 2 import system permease protein LsrC [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=347
Score = 53.9 bits (128), Expect = 1e-11
Identities = 74/302 (25%), Positives = 128/302 (42%), Gaps = 31/302 (10%)
Query 5 VPLLAGTLAAATPLIFAGMGELVVERTGVINLGV---EGM--MLIGAIAGFAFCATTGLG 59
V L ++A L+ +G +V T I++ V GM +L+G + +
Sbjct 34 VQTLTMVFSSAQILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGVMLNAGYSLPVAC- 92
Query 60 PAAGLLAGAVAGMLSALIFAVLAL-SLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAG 118
A L+ G VAG + ++ A L + ++ A GL I + + G ++ AG
Sbjct 93 -LATLILGIVAGFFNGVLVAWLKIPAIVATLGTLGLYRGI----MLLWTGGKWIEGLPAG 147
Query 119 LSAMNLLGLQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAH 178
L ++ P+ + + + +++ LL+ W+LAKT G A G++ + A
Sbjct 148 LKQLS----------APVFLGISAIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGAR 197
Query 179 AMGYPVLLIRYGAVLFGGAMAGVGG-AFLSTV-YTPLWVENMVAGRGWIAIALVVFAAWK 236
+G ++R A G MA + G F S + + P + + A L +
Sbjct 198 QLGVRTEMVRIMAFSLNGGMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLG 257
Query 237 PARLMIGAYLFGGVTILQFQAQALGIDIPV---EFLAALPYVATIIVLVFISRDRKLLQM 293
+ +IGA L G + Q + + + IP +F+A L + VLVF R R LQ
Sbjct 258 GSGTVIGAIL-GAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLG---VLVFDGRLRCALQR 313
Query 294 NL 295
NL
Sbjct 314 NL 315
>Q1JUP6 L-arabinose ABC transporter permease protein AraH [Azospirillum
brasilense]
Length=339
Score = 51.6 bits (122), Expect = 8e-11
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query 8 LAGTLAAATPLIFAGMGELVVERTGVINLGVEGMMLI-GAIAGFAFCATTG--LGPAAGL 64
+ G L + T + + + V G ++L V ++ G +A AT LG A G+
Sbjct 60 IQGLLLSVTLIGSIAVTMMFVLALGEVDLSVASIVAFSGVVASTLITATHSVVLGIAGGV 119
Query 65 LAGAVAGMLSALIFA-----VLALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGL 119
LAG G+++ ++ A L ++LA + GLA I G + + + L
Sbjct 120 LAGGAVGLVNGVLIARWRINSLIVTLAMMEVVRGLAF-ITSNGDAVMISEE----RFFDL 174
Query 120 SAMNLLGLQDIPVIGPILFHQNYVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHA 179
+ LG+ +Y ++ +I+ F++ ++L KT G + AVG + E+A
Sbjct 175 GGGSFLGI-------------SYPIWSNIVGFVVFGFLLRKTVFGKNVLAVGGNGEAALL 221
Query 180 MGYPVLLIRYGAVLFGGAMAGVGGAFLST 208
G PV+ I+ + G + G G L++
Sbjct 222 AGLPVMRIKITVFVLQGLVTGFAGVMLAS 250
>Q9F9B1 Fructose import permease protein FrcC [Rhizobium meliloti]
Length=360
Score = 46.2 bits (108), Expect = 4e-09
Identities = 49/193 (25%), Positives = 75/193 (39%), Gaps = 23/193 (12%)
Query 22 GMGELVVERTGVINLGVEGMMLIGAIAGFAFCATTGLGPAAGLLAGAVAGMLSALIFAVL 81
G + +V T I+L V +M++ ++ F G PA ++ G G L I L
Sbjct 90 GAAQTLVILTAGIDLSVGAIMVLSSVIMGQFTFRYGFPPALSVICGLGVGALCGYINGTL 149
Query 82 ALSLAANQAACGLALTIFGVGLSAFVGQHYVSTSLAGLSAMNLLGLQDIPVIGPIL--FH 139
+ L F V L + V S SA + QDI IL F
Sbjct 150 VARMK---------LPPFIVTLGMW---QIVLASNFLYSANETIRAQDISANASILQFFG 197
Query 140 QN---------YVVYLSIITFLLIWWILAKTKLGLLLKAVGESPESAHAMGYPVLLIRYG 190
QN Y V + ++ L+W++L +T G + AVG+ PE+A G V +
Sbjct 198 QNFRIGNAVFTYGVVVMVLLVCLLWYVLNRTAWGRYVYAVGDDPEAAKLAGVNVTRMLIS 257
Query 191 AVLFGGAMAGVGG 203
G + + G
Sbjct 258 IYTLSGLICALAG 270
Score = 16.9 bits (32), Expect = 9.7
Identities = 12/34 (35%), Positives = 18/34 (53%), Gaps = 6/34 (18%)
Query 42 MLIGAIAGFAFCATTGLGPAAGLLAGA-VAGMLS 74
++IG I+ F G G G+L GA + G+ S
Sbjct 296 VVIGGISLFG-----GRGSIMGMLFGALIVGVFS 324
Lambda K H a alpha
0.330 0.144 0.434 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1105260
Database: 549ba65a04b971ba6151222f209ee10f.SwissProt.fasta
Posted date: May 30, 2024 9:43 PM
Number of letters in database: 4,895
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
