BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e64a936909fedc1aae98b0f8f36fd6b8.SwissProt.fasta
21 sequences; 12,384 total letters
Query= ACIAD0225
Length=352
Score E
Sequences producing significant alignments: (Bits) Value
Q6FFG4 DNA polymerase IV [Acinetobacter baylyi (strain ATCC 33305... 699 0.0
A1KUQ3 DNA polymerase IV [Neisseria meningitidis serogroup C / se... 348 4e-122
Q9JRG1 DNA polymerase IV [Neisseria meningitidis serogroup A / se... 347 5e-122
Q5F8N2 DNA polymerase IV [Neisseria gonorrhoeae (strain ATCC 7008... 343 2e-120
Q9JYS8 DNA polymerase IV [Neisseria meningitidis serogroup B (str... 331 4e-116
B4SIF5 DNA polymerase IV [Stenotrophomonas maltophilia (strain R5... 313 1e-108
B2FLR2 DNA polymerase IV [Stenotrophomonas maltophilia (strain K2... 308 1e-106
Q8PGJ4 DNA polymerase IV [Xanthomonas axonopodis pv. citri (strai... 306 7e-106
Q8PCW8 DNA polymerase IV [Xanthomonas campestris pv. campestris (... 306 1e-105
Q4UQI2 DNA polymerase IV [Xanthomonas campestris pv. campestris (... 306 1e-105
Q3BP42 DNA polymerase IV [Xanthomonas campestris pv. vesicatoria ... 304 8e-105
Q47155 DNA polymerase IV [Escherichia coli (strain K12)] 266 4e-90
O74944 DNA polymerase kappa [Schizosaccharomyces pombe (strain 97... 186 5e-57
Q6JDV7 DNA polymerase kappa [Arabidopsis thaliana] 173 1e-51
A3EWL3 DNA repair protein REV1 [Arabidopsis thaliana] 166 1e-48
Q9UBZ9 DNA repair protein REV1 [Homo sapiens] 159 4e-46
Q9UBT6 DNA polymerase kappa [Homo sapiens] 159 5e-46
Q4KWZ7 DNA repair protein REV1 [Gallus gallus] 155 1e-44
Q97W02 DNA polymerase IV [Saccharolobus solfataricus (strain ATCC... 148 2e-44
Q920Q2 DNA repair protein REV1 [Mus musculus] 151 2e-43
Q9QUG2 DNA polymerase kappa [Mus musculus] 116 2e-31
>Q6FFG4 DNA polymerase IV [Acinetobacter baylyi (strain ATCC 33305
/ BD413 / ADP1)]
Length=351
Score = 699 bits (1803), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%), Gaps = 0/351 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ
Sbjct 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD
Sbjct 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI
Sbjct 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ
Sbjct 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF
Sbjct 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQLTLW 351
KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQLTLW
Sbjct 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQLTLW 351
>A1KUQ3 DNA polymerase IV [Neisseria meningitidis serogroup C
/ serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)]
Length=352
Score = 348 bits (892), Expect = 4e-122
Identities = 174/347 (50%), Positives = 234/347 (67%), Gaps = 0/347 (0%)
Query 2 RKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQA 61
RKIIHIDMDAFYASVELRE+P LK PVV++ R+VI AASY AR +GL SAM + A
Sbjct 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 63
Query 62 RKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATDV 121
++LCP + + P+FD YR VS QIH +F+++T +IEPLSLDEAYLDVT N N+P A++V
Sbjct 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASEV 123
Query 122 AIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKIP 181
A +IR I+ +T LTASAG+APNKFLAKIASDW KPNG V+ PH+VM F++ LPL KIP
Sbjct 124 AKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIP 183
Query 182 GVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQQ 241
GVG+VT K+Q L + T GDL+ E L+ HFG+YG +LY +G D R V+AER R Q
Sbjct 184 GVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERLQ 243
Query 242 ISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSFK 301
IS E T +DL L + + + LAE +W+ + KN++A+ V +KLK F++ + ++
Sbjct 244 ISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYS 303
Query 302 RALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQL 348
L +L+ + +D +RLIG+G+ L P + L
Sbjct 304 SVLPDCAALLQAAQMLIARVPPQTEDAFRLIGIGVGHLVPKNQQQDL 350
>Q9JRG1 DNA polymerase IV [Neisseria meningitidis serogroup A
/ serotype 4A (strain DSM 15465 / Z2491)]
Length=352
Score = 347 bits (891), Expect = 5e-122
Identities = 174/347 (50%), Positives = 235/347 (68%), Gaps = 0/347 (0%)
Query 2 RKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQA 61
RKIIHIDMDAFYASVELRE+P LK PVV++ R+VI AASY AR +GL SAM + A
Sbjct 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 63
Query 62 RKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATDV 121
++LCP + + P+FD YR VS QIH +F+++T +IEPLSLDEAYLDVT N N+P A++V
Sbjct 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYASEV 123
Query 122 AIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKIP 181
A +IR I+ +T LTASAG+APNKFLAKIASDW KPNG V+ PH+VM F++ LPL KIP
Sbjct 124 AKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIP 183
Query 182 GVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQQ 241
GVG+VT K+Q L ++T GDL+ E L+ HFG+YG +LY A+G D R V+AER Q
Sbjct 184 GVGKVTLKKMQSLGMQTAGDLRRFERGELLNHFGRYGYRLYDLARGTDERPVKAERECLQ 243
Query 242 ISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSFK 301
IS E T +DL L + + + LAE +W+ + KN++A+ V +KLK F++ + ++
Sbjct 244 ISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYS 303
Query 302 RALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQL 348
L +L+ + +D +RLIG+G+ L P + L
Sbjct 304 SVLPDCTALLQAAQMLMARVPPQTEDAFRLIGIGVGHLVPKNQQQDL 350
>Q5F8N2 DNA polymerase IV [Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090)]
Length=352
Score = 343 bits (881), Expect = 2e-120
Identities = 172/348 (49%), Positives = 233/348 (67%), Gaps = 0/348 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
+RKIIHIDMDAFYASVELRE+P LK PVV++ R+VI AASY AR +GL SAM +
Sbjct 3 LRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVAT 62
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
++LCP + + P+FD YR VS QIH +F+++T +IEPLSLDEAYLDVT N N+P A +
Sbjct 63 VKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAGE 122
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
VA +IR I+ +T LTASAG+APNKFLAKIASDW KPNG V+ PH+VM F++ LPL KI
Sbjct 123 VAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKI 182
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PG G+VT K+Q L + T GDL+ E L+ HFG+YG +LY A+G D V+AER R
Sbjct 183 PGAGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLARGTDEHPVKAERERL 242
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
QIS E T +DL L + + + LAE +W+ + KN++A+ V +KLK F++ + ++
Sbjct 243 QISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTY 302
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASESQL 348
L +L+ + +D +RLIG+G+ +L P + L
Sbjct 303 SSVLPDCAALLQAAQMLMARVPPQTEDAFRLIGIGVGRLVPKNQQQDL 350
>Q9JYS8 DNA polymerase IV [Neisseria meningitidis serogroup B
(strain MC58)]
Length=318
Score = 331 bits (849), Expect = 4e-116
Identities = 165/303 (54%), Positives = 215/303 (71%), Gaps = 0/303 (0%)
Query 2 RKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQA 61
RKIIHIDMDAFYASVELRE+P LK PVV++ R+VI AASY AR +GL SAM + A
Sbjct 4 RKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYEARQFGLHSAMSVATA 63
Query 62 RKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATDV 121
++LCP + + P+FD YR VS QIH +F+++T +IEPLSLDEAYLDVT N N+P A DV
Sbjct 64 KRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSLDEAYLDVTRNFKNIPYAGDV 123
Query 122 AIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKIP 181
A +IR I+ +T LTASAG+APNKFLAKIASDW KPNG V+ PH+VM F++ LPL KIP
Sbjct 124 AKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIP 183
Query 182 GVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQQ 241
GVG+VT K+Q L + T GDL+ E L+ HFG+YG +LY +G D R V+AER R Q
Sbjct 184 GVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAERERLQ 243
Query 242 ISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSFK 301
IS E T +DL L + + + LAE +W+ + KN++A+ V +KLK F++ + ++
Sbjct 244 ISTEITLPEDLPLEQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYS 303
Query 302 RAL 304
L
Sbjct 304 SVL 306
>B4SIF5 DNA polymerase IV [Stenotrophomonas maltophilia (strain
R551-3)]
Length=356
Score = 313 bits (803), Expect = 1e-108
Identities = 161/336 (48%), Positives = 223/336 (66%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
+RKIIH+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY ARV+G+RSAMP +
Sbjct 4 LRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVR 63
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD I + P+F +Y+AVS Q+ +IF +HT ++EPLSLDEAYLDVTE + + ATD
Sbjct 64 AERLCPDAIFVPPDFARYKAVSQQVREIFLRHTDLVEPLSLDEAYLDVTEPKSGMELATD 123
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
+A IR QI E+T LTASAG+APNKFLAKIASDW KP+G VI P +V F+ LP+ ++
Sbjct 124 IARTIRAQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRV 183
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V + KL + T GDL+ L + FG +G+ LY A+G+D R V+ ++ Q
Sbjct 184 PGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGVDERPVEPDQQVQ 243
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
IS E TF +DL L + + LAEK W + + V +KLK F++ S +
Sbjct 244 SISSEDTFAEDLPLEDLGEAIVQLAEKTWNATRKTERVGHTVVLKLKTAQFRILTRSFTP 303
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
+R +S++E + + L + L D +YRL+GVGL
Sbjct 304 ERPPESMEELRDIALALRARVDLPADTRYRLVGVGL 339
>B2FLR2 DNA polymerase IV [Stenotrophomonas maltophilia (strain
K279a)]
Length=364
Score = 308 bits (790), Expect = 1e-106
Identities = 159/336 (47%), Positives = 223/336 (66%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
+RKIIH+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY ARV+G+RSAMP +
Sbjct 4 LRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARVFGVRSAMPAVR 63
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD I + P+F +Y+AVS Q+ IF +HT ++EPLSLDEAYLDV+E + + ATD
Sbjct 64 AERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVSEPKSGIELATD 123
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
+A IR QI E+T+LTASAG+APNKFLAKIASDW KP+G VI P +V F+ LP+ ++
Sbjct 124 IARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRV 183
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V + KL + T GDL+ L + FG +G+ LY A+GID R V+ ++ Q
Sbjct 184 PGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQ 243
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
IS E TF +DL L + + + LA K W + + V +KLK F++ S +
Sbjct 244 SISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTP 303
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
+R +S++E + + L + L + +YRL+GVGL
Sbjct 304 ERPPESMEELRDIALALRARVDLPAETRYRLVGVGL 339
>Q8PGJ4 DNA polymerase IV [Xanthomonas axonopodis pv. citri (strain
306)]
Length=359
Score = 306 bits (785), Expect = 7e-106
Identities = 159/336 (47%), Positives = 219/336 (65%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
MRKI+H+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY AR++G+RSAMP +
Sbjct 1 MRKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARIFGIRSAMPAVR 60
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD I + P+F +Y+AVS Q+ +IF +HT ++EPLSLDEAYLDVT + AT+
Sbjct 61 AERLCPDAIFVPPDFTRYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHAKTGMQLATE 120
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
VA IR QI E+T LTASAG+APNKFLAKIASDW KP+G VI P +V F+ L + +I
Sbjct 121 VAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVNRI 180
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V KL L + T+ DL+ L HFG +G+ LY A+GID R V+ ++ Q
Sbjct 181 PGVGKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQEVQ 240
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
+S E TF +DL L + + L LAEK W + + R V +KLK +F++ S +
Sbjct 241 SVSSEDTFSEDLALDALAPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRILTRSYTP 300
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
++ S + + L + + L +YRL+GVGL
Sbjct 301 EQPPTSQEALAQIALALTRRVELPAQTRYRLVGVGL 336
>Q8PCW8 DNA polymerase IV [Xanthomonas campestris pv. campestris
(strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)]
Length=359
Score = 306 bits (783), Expect = 1e-105
Identities = 159/336 (47%), Positives = 219/336 (65%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
MRKI+H+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY AR +G+RSAMP +
Sbjct 1 MRKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVR 60
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD + + P+F +Y+AVS Q+ +IF +HT ++EPLSLDEAYLDVTE + AT+
Sbjct 61 AERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEAKTGMQLATE 120
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
+A IR QI E+T LTASAG+APNKFLAKIASDW KP+G VI P +V F+ LP+ +I
Sbjct 121 IAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVNRI 180
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V KL L + T+ DL+ L HFG +G+ LY A+GID R V+ ++ Q
Sbjct 181 PGVGKVMDGKLAALGIVTVSDLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQEVQ 240
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
+S E TF +DL L + LAEK W + + R V +KLK +F++ S +
Sbjct 241 SVSSEDTFSEDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRILTRSYTP 300
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
++ SL + L + + L + +YRL+GVGL
Sbjct 301 EQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGL 336
>Q4UQI2 DNA polymerase IV [Xanthomonas campestris pv. campestris
(strain 8004)]
Length=359
Score = 306 bits (783), Expect = 1e-105
Identities = 159/336 (47%), Positives = 219/336 (65%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
MRKI+H+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY AR +G+RSAMP +
Sbjct 1 MRKIVHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVR 60
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD + + P+F +Y+AVS Q+ +IF +HT ++EPLSLDEAYLDVTE + AT+
Sbjct 61 AERLCPDAVFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTEAKTGMQLATE 120
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
+A IR QI E+T LTASAG+APNKFLAKIASDW KP+G VI P +V F+ LP+ +I
Sbjct 121 IAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLPVNRI 180
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V KL L + T+ DL+ L HFG +G+ LY A+GID R V+ ++ Q
Sbjct 181 PGVGKVMDGKLAALGIVTVSDLRLRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQEVQ 240
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
+S E TF +DL L + LAEK W + + R V +KLK +F++ S +
Sbjct 241 SVSSEDTFSEDLALDALDPHIQRLAEKTWHATRRTERIGRTVVLKLKTSNFRILTRSYTP 300
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
++ SL + L + + L + +YRL+GVGL
Sbjct 301 EQPPASLQGLVDIALGLTRRVELPPETRYRLVGVGL 336
>Q3BP42 DNA polymerase IV [Xanthomonas campestris pv. vesicatoria
(strain 85-10)]
Length=359
Score = 304 bits (778), Expect = 8e-105
Identities = 159/336 (47%), Positives = 217/336 (65%), Gaps = 0/336 (0%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQ 60
MRKI+H+DMDAFYASVE R+ P L+ PVV++ R+V+ AASY AR +G+RSAMP +
Sbjct 1 MRKIVHVDMDAFYASVEQRDDPGLRGKPVVVAWRGARSVVCAASYEARTFGIRSAMPAVR 60
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A +LCPD I + P+F +Y+AVS Q+ +IF +HT ++EPLSLDEAYLDVT + AT+
Sbjct 61 AERLCPDAIFVPPDFARYKAVSRQVREIFHRHTDLVEPLSLDEAYLDVTHAKTGMQLATE 120
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
VA IR QI E+T LTASAG+APNKFLAKIASDW KP+G VI P +V F+ L + +I
Sbjct 121 VAQLIRTQIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIAPSRVDAFLLPLKVNRI 180
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVRQ 240
PGVG+V KL L + T+ DL+ L HFG +G+ LY A+GID R V+ ++ Q
Sbjct 181 PGVGKVMDGKLAALGIVTVADLRQRPLEELQAHFGSFGQSLYRRARGIDERPVEPDQEVQ 240
Query 241 QISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHSKSF 300
+S E TF +DL L + L LAEK W + + R V +KLK +F++ S +
Sbjct 241 SVSSEDTFSEDLALDALDPHILRLAEKTWLATRRTERIGRTVVLKLKTSNFRILTRSYTP 300
Query 301 KRALQSLDEFKSVLALLLQEISLTLDDQYRLIGVGL 336
++ S + + L + + L +YRL+GVGL
Sbjct 301 EQPPTSQEALAQIALALTRRVELPTQTRYRLVGVGL 336
>Q47155 DNA polymerase IV [Escherichia coli (strain K12)]
Length=351
Score = 266 bits (680), Expect = 4e-90
Identities = 144/300 (48%), Positives = 202/300 (67%), Gaps = 12/300 (4%)
Query 1 MRKIIHIDMDAFYASVELRERPELKTLPVVIS-SHHPRAVIAAASYPARVYGLRSAMPMG 59
MRKIIH+DMD F+A+VE+R+ P L+ +P+ I S R VI+ A+YPAR +G+RSAMP G
Sbjct 1 MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60
Query 60 QARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSAT 119
A KLCP L ++ FD Y+ S+ I +IF ++T IEPLSLDEAYLDVT++++ SAT
Sbjct 61 MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120
Query 120 DVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKK 179
+A +IRQ I+ + LTASAGVAP KFLAKIASD NKPNG VI P +V F+Q LPL K
Sbjct 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180
Query 180 IPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGIDHRSVQAERVR 239
IPGVG+V+ KL+ + L T GD+Q + +L++ FGK+G+ L+ +QGID R V +ER+R
Sbjct 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240
Query 240 QQISKETTFDQDL-YLHECSSYWLMLAEKVWQSLQNK------NLQARGVNIKLKNKHFQ 292
+ + E T +D+ + EC + + E+++ L+ + +L +KLK FQ
Sbjct 241 KSVGVERTMAEDIHHWSECEA----IIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQ 296
>O74944 DNA polymerase kappa [Schizosaccharomyces pombe (strain
972 / ATCC 24843)]
Length=547
Score = 186 bits (471), Expect = 5e-57
Identities = 122/344 (35%), Positives = 188/344 (55%), Gaps = 22/344 (6%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQARK 63
I+H+D DAFYAS+E + P+LK+LP+ + ++V+ A+Y AR +G+RSAMP ARK
Sbjct 132 IVHVDCDAFYASIEELKNPKLKSLPMAVG----KSVLCTANYVARKFGVRSAMPEFIARK 187
Query 64 LCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLN------NLPS 117
+CPDL++I N +Y S +I + Q+ + P S+DE Y+++T +L + +
Sbjct 188 ICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTVEN 247
Query 118 ATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFIQNL 175
T V +IR+Q+ E+T +T S G+A NK LAKIAS+ KPN I + + +F+ +L
Sbjct 248 ITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASNKRKPNNQFFIPFDEIGISKFMNDL 307
Query 176 PLKKIPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYL---YAQGIDHRS 232
P++++ G+GRV + +L L+++T GD+Q +L F Q L Y G
Sbjct 308 PVREVSGIGRVLEQQLLGLEIKTCGDIQR-NLVILSYIFLPKSFQNLLRCSYGFGTTILD 366
Query 233 VQAERVRQQISKETTFDQDLYLHECSSYWL-MLAEKVWQSLQNKNLQARGVNIKLKNKHF 291
E R+ I E TF +L Y L +L + V ++LQ + L + IK K F
Sbjct 367 EYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQNVSENLQKRGLVTNSIAIKYKTSEF 426
Query 292 QVFQHSKSFKRALQS-LDEFKSVLALLLQEISLTLDDQYRLIGV 334
QV KS + + S D K L LL Q +T+ RL+GV
Sbjct 427 QVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTI----RLLGV 466
>Q6JDV7 DNA polymerase kappa [Arabidopsis thaliana]
Length=671
Score = 173 bits (438), Expect = 1e-51
Identities = 120/344 (35%), Positives = 190/344 (55%), Gaps = 22/344 (6%)
Query 5 IHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQARKL 64
+H+DMDAFYA+VE P +K P+ + ++I+ A+Y AR +G+R+AMP ARKL
Sbjct 106 LHVDMDAFYAAVETLSDPSIKGKPMAVGG---LSMISTANYEARKFGVRAAMPGFIARKL 162
Query 65 CPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLP-SATDVAI 123
CPDLI + +F KY S ++F+ + SLDEAYLD+TE S ++A
Sbjct 163 CPDLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAE 222
Query 124 QIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFIQNLPLKKIP 181
++R ++ +T LT SAGVA N+ LAK+ SD NKPNG V++ + VM F+ LP++KI
Sbjct 223 ELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKIG 282
Query 182 GVGRVTQDKLQQ-LKLETLGDLQHIEEAVLIQHFGKYGKQLYL-YAQGIDHRSVQAERVR 239
G+G+VT+ L+ L ++T ++ + ++L F + +L G+ + R R
Sbjct 283 GIGKVTEHILKDALGIKTCEEMVQ-KGSLLYALFSQSSADFFLSVGLGLGGTNTPQVRSR 341
Query 240 QQISKETTF----DQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQ 295
+ IS E TF D+ L + LAE + ++ + L AR + +KLK F++
Sbjct 342 KSISSERTFAATGDERLLYSKLDE----LAEMLSHDMKKEGLTARTLTLKLKTASFEIRS 397
Query 296 HSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGLYQ 338
+ S +R S D+ K LL E+ +++ RLIG+ + Q
Sbjct 398 RAVSLQRYTCSSDDILKHATKLLKAELPVSV----RLIGLRMSQ 437
>A3EWL3 DNA repair protein REV1 [Arabidopsis thaliana]
Length=1105
Score = 166 bits (421), Expect = 1e-48
Identities = 103/296 (35%), Positives = 172/296 (58%), Gaps = 13/296 (4%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVIS-SHHPR--AVIAAASYPARVYGLRSAMPMGQ 60
IIHID+D F+ SV ++ R EL PV + S +P+ A I++A+YPAR YG+++ M +
Sbjct 375 IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRH 434
Query 61 ARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD 120
A+ LCP L+I+ NF+ Y V+ Q + I +H ++ LS DEA+LDV++ L+++ +
Sbjct 435 AKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSD-LSDVETEV- 492
Query 121 VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKI 180
+A IR +I E T +ASAG+ +A++A+ KP G I +V +F+ LP+ +
Sbjct 493 LASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTL 552
Query 181 PGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFG-KYGKQLYLYAQGIDHRSVQAERVR 239
PGVG V ++KL + ++T G L+ I + L + FG K G+ L+ Y++G+D RSV A +
Sbjct 553 PGVGSVLKEKLVKQNIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query 240 QQISKETTF------DQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNK 289
+ I E + QD+++ + L ++V LQ + R +K+K +
Sbjct 613 KSIGAEVNWGVRFRDQQDVFI-LVQHFLQCLCKEVSLRLQGCEMIGRTFTLKIKKR 667
>Q9UBZ9 DNA repair protein REV1 [Homo sapiens]
Length=1251
Score = 159 bits (402), Expect = 4e-46
Identities = 103/339 (30%), Positives = 168/339 (50%), Gaps = 56/339 (17%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVV--------------------------------- 30
I+H+DMD F+ SV +R RP+LK PV
Sbjct 419 IMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGK 478
Query 31 --------------------ISSHHPRAVIAAASYPARVYGLRSAMPMGQARKLCPDLII 70
I S RA IA+ SY AR G+++ M G A++LCP+L
Sbjct 479 AADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQA 538
Query 71 IEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSATD-VAIQIRQQI 129
+ +F Y+ V+ +++ +TH IE +S DEA +D+TE L D A +R +I
Sbjct 539 VPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEILAETKLTPDEFANAVRMEI 598
Query 130 WEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKIPGVGRVTQD 189
+QT AS G+ N LA++A+ KP+G +KP +V FI+ + +PGVG +
Sbjct 599 KDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMES 658
Query 190 KLQQLKLETLGDLQHIEEAVLIQHFG-KYGKQLYLYAQGIDHRSVQAERVRQQISKETTF 248
KL L ++T GDLQ++ A L + FG K G+ LY + +G+D R V+ E+ R+ +S E +
Sbjct 659 KLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINY 718
Query 249 D-QDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKL 286
+ E ++ L L+E++ + L+ ++ + + +K+
Sbjct 719 GIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKI 757
>Q9UBT6 DNA polymerase kappa [Homo sapiens]
Length=870
Score = 159 bits (401), Expect = 5e-46
Identities = 126/413 (31%), Positives = 200/413 (48%), Gaps = 84/413 (20%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQARK 63
I+HIDMDAFYA+VE+R+ PELK P+ + S ++++ ++Y AR +G+R+AMP A++
Sbjct 103 IVHIDMDAFYAAVEMRDNPELKDKPIAVGS---MSMLSTSNYHARRFGVRAAMPGFIAKR 159
Query 64 LCPDLIII---------------------EPNF------DKYRAVSHQIHQI-------- 88
LCP LII+ +PNF + Y ++ + +
Sbjct 160 LCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKR 219
Query 89 ---------------------FQQHTHIIEPLSLDEAYLDVT----------ENLNNLP- 116
+H I PL +E+ DV E NN
Sbjct 220 RYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQI 279
Query 117 ---------SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ 167
SA +V +IR +I ++T+LTASAG+APN LAK+ SD NKPNG I P++
Sbjct 280 LQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNR 339
Query 168 --VMQFIQNLPLKKIPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLY- 224
VM FI++LP++K+ G+G+VT+ L+ L + T +L + + A+L F + +L+
Sbjct 340 QAVMDFIKDLPIRKVSGIGKVTEKMLKALGIITCTEL-YQQRALLSLLFSETSWHYFLHI 398
Query 225 AQGIDHRSVQAERVRQQISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNI 284
+ G+ + + R+ +S E TF + E S L ++ Q LQ + L+ R V I
Sbjct 399 SLGLGSTHLTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTI 458
Query 285 KLKNKHFQVFQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGL 336
KLKN +F+V + + + + +E F LL EI RL +G+
Sbjct 459 KLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDADFPHPLRLRLMGV 511
>Q4KWZ7 DNA repair protein REV1 [Gallus gallus]
Length=1255
Score = 155 bits (391), Expect = 1e-44
Identities = 90/252 (36%), Positives = 147/252 (58%), Gaps = 3/252 (1%)
Query 38 AVIAAASYPARVYGLRSAMPMGQARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIE 97
A IA+ SY AR G+++ M GQA+KLCP+L + +F+ Y+ V+ +++I +TH IE
Sbjct 517 AEIASCSYEARQAGIKNGMFFGQAKKLCPNLQAVSYDFNAYKEVAQTVYEILASYTHNIE 576
Query 98 PLSLDEAYLDVTENLNNLPSATD-VAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNK 156
+S DEA +D+TE L D +A IR +I QT TAS G+ N LA++A+ K
Sbjct 577 AVSCDEALVDITEILTETRLTPDELANAIRDEIKAQTKCTASVGMGSNILLARMATRKAK 636
Query 157 PNGLCVIKPHQVMQFIQNLPLKKIPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFG- 215
P+G +KP +V FI+ + +PGVGR + KL L + T GDLQ + L + FG
Sbjct 637 PDGQYHLKPEEVDDFIRGQLVTNLPGVGRSMESKLASLGIRTCGDLQCASMSKLQKEFGP 696
Query 216 KYGKQLYLYAQGIDHRSVQAERVRQQISKETTFD-QDLYLHECSSYWLMLAEKVWQSLQN 274
K G+ LY + +G+D R V+ E+ R+ +S E + + E ++ L L+E++ + L+
Sbjct 697 KTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 756
Query 275 KNLQARGVNIKL 286
++ + + +K+
Sbjct 757 AGMKGKRLTLKI 768
Score = 41.2 bits (95), Expect = 9e-07
Identities = 16/31 (52%), Positives = 24/31 (77%), Gaps = 0/31 (0%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVISSH 34
I+H+DMD F+ SV +R RP+LK PV ++S+
Sbjct 423 IMHVDMDCFFVSVAIRNRPDLKGKPVAVTSN 453
Score = 19.2 bits (38), Expect = 5.9
Identities = 12/32 (38%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query 269 WQSLQNKNLQARGVNIKLKNK-HFQVFQHSKS 299
WQ QNK L + I++ +K V++HS S
Sbjct 471 WQYYQNKLLNGK-AEIRIPDKLDSLVWEHSDS 501
>Q97W02 DNA polymerase IV [Saccharolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2)]
Length=352
Score = 148 bits (373), Expect = 2e-44
Identities = 98/337 (29%), Positives = 177/337 (53%), Gaps = 10/337 (3%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVISSHHPR----AVIAAASYPARVYGLRSAMPMG 59
++ +D D FYA VE P LK PVV+ R +A A+Y AR +G+++ +P+
Sbjct 3 VLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIV 62
Query 60 QARKLCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLPSAT 119
+A+K+ P+ + + + Y+ VS +I + ++++ IE S+DEAYLD+++ + + A
Sbjct 63 EAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAY 122
Query 120 DVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKK 179
++ ++I+ +I E+ +T + G++ NK AKIA+D KPNG+ VI +V + I+ L +
Sbjct 123 NLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIAD 182
Query 180 IPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLYAQGID-HRSVQAERV 238
+PG+G +T +KL++L + L D IE L G+ K YL + D + RV
Sbjct 183 VPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGE-AKAKYLISLARDEYNEPIRTRV 241
Query 239 RQQISKETTFDQD-LYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQVFQHS 297
R+ I + T ++ L E Y E+ + L + +A +++ + +
Sbjct 242 RKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKA--IHVVAVTEDLDIVSRG 299
Query 298 KSFKRALQSLDEFKSVLALLLQEISLTLDDQYRLIGV 334
++F + S + S LLQ+I + + R IGV
Sbjct 300 RTFPHGI-SKETAYSESVKLLQKILEEDERKIRRIGV 335
>Q920Q2 DNA repair protein REV1 [Mus musculus]
Length=1249
Score = 151 bits (382), Expect = 2e-43
Identities = 100/339 (29%), Positives = 168/339 (50%), Gaps = 56/339 (17%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVV--------------------------------- 30
++H+DMD F+ SV +R RP+LK PV
Sbjct 417 VMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGTAPLRPGANPQLEWQYYQNRALRGK 476
Query 31 --------------------ISSHHPRAVIAAASYPARVYGLRSAMPMGQARKLCPDLII 70
I S +A IA+ SY AR G+++ M G A++LCP+L
Sbjct 477 AADIPDSSVWENQDSTQTNGIDSVLSKAEIASCSYEARQVGIKNGMFFGYAKQLCPNLQA 536
Query 71 IEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENLNNLP-SATDVAIQIRQQI 129
+ +F R V+ +++ +TH IE +S DEA +DVT+ L S + A +R +I
Sbjct 537 VPYDFHACREVAQAMYETLASYTHSIEAVSCDEALIDVTDILAETKLSPEEFAAALRIEI 596
Query 130 WEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQVMQFIQNLPLKKIPGVGRVTQD 189
++T AS G+ N LA++A+ KP+G ++P +V FI+ + +PGVGR +
Sbjct 597 KDKTKCAASVGIGSNILLARMATKKAKPDGQYHLQPDEVDDFIRGQLVTNLPGVGRSMES 656
Query 190 KLQQLKLETLGDLQHIEEAVLIQHFG-KYGKQLYLYAQGIDHRSVQAERVRQQISKETTF 248
KL L ++T GDLQ + A L + FG K G+ LY + +G+D R V+ E+ R+ +S E +
Sbjct 657 KLASLGIKTCGDLQCLTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINY 716
Query 249 D-QDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKL 286
+ E ++ L L+E++ + L+ ++ + + +K+
Sbjct 717 GIRFTQPKEAEAFLLSLSEEIQRRLEAAGMKGKRLTLKI 755
Score = 23.9 bits (50), Expect = 0.22
Identities = 12/38 (32%), Positives = 18/38 (47%), Gaps = 0/38 (0%)
Query 215 GKYGKQLYLYAQGIDHRSVQAERVRQQISKETTFDQDL 252
G YG L + H + +ER +++S T QDL
Sbjct 1102 GAYGSPQKLMDGFLQHEGMASERPLEEVSASTPGAQDL 1139
>Q9QUG2 DNA polymerase kappa [Mus musculus]
Length=852
Score = 116 bits (290), Expect = 2e-31
Identities = 54/109 (50%), Positives = 82/109 (75%), Gaps = 3/109 (3%)
Query 4 IIHIDMDAFYASVELRERPELKTLPVVISSHHPRAVIAAASYPARVYGLRSAMPMGQARK 63
I+H+DMDAFYA+VE+R+ PELK P+ + S +++A ++Y AR +G+R+AMP A++
Sbjct 102 IVHVDMDAFYAAVEMRDNPELKDKPIAVGS---MSMLATSNYHARRFGVRAAMPGFIAKR 158
Query 64 LCPDLIIIEPNFDKYRAVSHQIHQIFQQHTHIIEPLSLDEAYLDVTENL 112
LCP LII+ PNFDKYRAVS ++ +I ++ +SLDEAYL++T++L
Sbjct 159 LCPQLIIVPPNFDKYRAVSKEVKEILAEYDPNFMAMSLDEAYLNITQHL 207
Score = 113 bits (282), Expect = 2e-30
Identities = 81/233 (35%), Positives = 131/233 (56%), Gaps = 6/233 (3%)
Query 117 SATDVAIQIRQQIWEQTSLTASAGVAPNKFLAKIASDWNKPNGLCVIKPHQ--VMQFIQN 174
SA +V +IR +I ++T+LTASAG+APN LAK+ SD NKPNG I P + VM FI++
Sbjct 288 SAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPSRSAVMDFIKD 347
Query 175 LPLKKIPGVGRVTQDKLQQLKLETLGDLQHIEEAVLIQHFGKYGKQLYLY-AQGIDHRSV 233
LP++K+ G+G+VT+ L L + T +L + + A+L F + +L+ A G+ +
Sbjct 348 LPIRKVSGIGKVTEKMLMALGIVTCTEL-YQQRALLSLLFSETSWHYFLHIALGLGSTDL 406
Query 234 QAERVRQQISKETTFDQDLYLHECSSYWLMLAEKVWQSLQNKNLQARGVNIKLKNKHFQV 293
+ R+ +S E TF + E S L ++ LQ + L+ R V IKLKN +F+V
Sbjct 407 ARDGERKSMSVERTFSEISKTEEQYSLCQELCAELAHDLQKEGLKGRTVTIKLKNVNFEV 466
Query 294 FQHSKSFKRALQSLDE-FKSVLALLLQEISLTLDDQYRLIGVGLYQLSPSASE 345
+ + A+ + +E F LL E+++ RL +G+ ++S +SE
Sbjct 467 KTRASTVPAAISTAEEIFAIAKELLRTEVNVGSPHPLRLRLMGV-RMSTFSSE 518
Lambda K H a alpha
0.322 0.135 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3352500
Database: e64a936909fedc1aae98b0f8f36fd6b8.SwissProt.fasta
Posted date: May 9, 2024 3:27 PM
Number of letters in database: 12,384
Number of sequences in database: 21
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
