BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: e175c2f2b673f1c329ac2da9bb68751e.SwissProt.fasta
           3 sequences; 1,283 total letters



Query= ACIAD0240

Length=434
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P32722 Porin D [Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2...  229     1e-74
Q88JX6 Porin-like protein GalP [Pseudomonas putida (strain ATCC 4...  135     2e-39
Q88FY7 Porin-like protein NicP [Pseudomonas putida (strain ATCC 4...  130     1e-37


>P32722 Porin D [Pseudomonas aeruginosa (strain ATCC 15692 / DSM 
22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 
/ PAO1)]
Length=443

 Score = 229 bits (585),  Expect = 1e-74
 Identities = 154/462 (33%), Positives = 233/462 (50%), Gaps = 50/462 (11%)

Query  1    MLKAQKLTLAVVINAV--LISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDK  58
            ++K   + LAV   +    ++ A+ S+Q++AKGF+E +   +LLRN +  RD K G  D+
Sbjct  3    VMKWSAIALAVSAGSTQFAVADAFVSDQAEAKGFIEDSSLDLLLRNYYFNRDGKSGSGDR  62

Query  59   NSWVQSAMLNLESGFTQGPIGFAAGVVGDFSFKL-GDNYHSGNSMVALKNDGREDANGRV  117
              W Q  +   ESGFTQG +GF     G    KL G +  +G   + + NDG+       
Sbjct  63   VDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGTSDKTGTGNLPVMNDGK-------  115

Query  118  DPYDQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTPEYFEGTLITSHEIKDLE  177
             P D ++R GG VK R S T L +G      PV A+  +R  P+   G  + S E + L+
Sbjct  116  -PRDDYSRAGGAVKVRISKTMLKWGEMQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLD  174

Query  178  LVAGKFTKNQLPEHIASDQNGLDRAYVW---------GAKYKFNDQLNASYYGADIKDKI  228
            L AG FT+ + P  + S +  L   Y           G +Y   D L+AS YGA+++D  
Sbjct  175  LEAGHFTEGKEPTTVKS-RGELYATYAGETAKSADFIGGRYAITDNLSASLYGAELEDIY  233

Query  229  ERHYVSAAYKQPLANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTY  288
             ++Y+++ Y  PLA+D SL +++  Y T          N     +  D++N  W+ +  Y
Sbjct  234  RQYYLNSNYTIPLASDQSLGFDFNIYRT----------NDEGKAKAGDISNTTWSLAAAY  283

Query  289  SQGPHSVMGAYQQNTGGIGYDY-GVNQD----GGQSIYLPNS-YLSDFNSKGEKSVQLQY  342
            +   H+   AYQ+  G   +DY G  ++    GG SI+L NS   SDFN  GEKS Q +Y
Sbjct  284  TLDAHTFTLAYQKVHGDQPFDYIGFGRNGSGAGGDSIFLANSVQYSDFNGPGEKSWQARY  343

Query  343  NLDLGAYNVPGLKWTTAFVYGWDID---IDSKNI--------DNANEREFFNQLSYTVQS  391
            +L+L +Y VPGL +   ++ G DID   +   N+        ++    E   +  Y VQS
Sbjct  344  DLNLASYGVPGLTFMVRYINGKDIDGTKMSDNNVGYKNYGYGEDGKHHETNLEAKYVVQS  403

Query  392  GFAKDLKIRARYSILRESDIGANGYGDTNETRIFIDFPIKFL  433
            G AKDL  R R +  R +     G GD NE R+ +D+P+  L
Sbjct  404  GPAKDLSFRIRQAWHRAN--ADQGEGDQNEFRLIVDYPLSIL  443


>Q88JX6 Porin-like protein GalP [Pseudomonas putida (strain ATCC 
47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=410

 Score = 135 bits (340),  Expect = 2e-39
 Identities = 119/425 (28%), Positives = 199/425 (47%), Gaps = 53/425 (12%)

Query  26   QSDAKGFVEGAQGSILLRNGFIQRDKK-KGLQDK-NSWVQSAMLNLESGFTQGPIGFAAG  83
            Q+ A+GFV+ A+ S+ LRN ++ RD      Q K   W QS + + +SG+T G +GF   
Sbjct  22   QALAEGFVDDAKASLTLRNFYMNRDYTGTASQGKAEEWTQSFIFDFKSGYTPGVVGFGVD  81

Query  84   VVGDFSFKL-GDNYHSGNSMVALKNDGREDANGRVDPYDQWTRGGGFVKARASNTTLTYG  142
            V+G +S KL G    +G  ++ + +DGR        P D + R     K R S T L  G
Sbjct  82   VLGLYSIKLDGGKGTAGTQLLPVHDDGR--------PADDFGRTALAGKMRVSRTELKVG  133

Query  143  TQVLDLPVLASMTTRNTPEYFEGTLITSHEIKDLELVAGKFTKNQLPEHIASDQN-----  197
                 LP+L +   R+ P+  +G  +TS+E+  L L  G+F +N  P + AS Q+     
Sbjct  134  EWSPTLPILRADDGRSLPQTLQGAQVTSNELAGLSLYGGQFRQNS-PRNDASMQDMSLFT  192

Query  198  ----GLDRAYVWGAKYKFNDQ--LNASYYGADIKDKIERHYVSAAYKQPLAN---DSSLS  248
                  DR    G +Y+FN +  L  ++Y A ++D  ++ Y    ++QPL N    ++L 
Sbjct  193  RTAFTSDRFNFAGGEYRFNQERTLVGAWY-AQLEDIYQQRYFQVQHQQPLGNWVLGANLG  251

Query  249  YEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQQNTGGIGY  308
            Y W       K G        +N RT            T+  G   VMG  +        
Sbjct  252  YFWGKDDGGAKAG-------ELNNRTASGLFSAKLGGNTFYVGLQKVMGDDEW-------  297

Query  309  DYGVNQDGGQSIYLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAFVYGWDIDI  368
             + VN   G ++   +++ S + S  E+S Q++++ +     +PGL     +++G+    
Sbjct  298  -FRVNGASGGTL-ANDAFGSSYESARERSWQVRHDFNFVVLGIPGLTLMNRYIHGY----  351

Query  369  DSKNIDNANEREFFNQLSYTVQSGFAKDLKIRARYSILRESDIGANGYGDTNETRIFIDF  428
               N+ NA+ +   ++L+Y VQSG  K L ++ R S  R      N +   +E R+ + +
Sbjct  352  ---NVHNASTQGRESELAYVVQSGPFKALNLKWRNSSQRRDWGSTNSF---DENRLIVSY  405

Query  429  PIKFL  433
            P+  L
Sbjct  406  PLSLL  410


>Q88FY7 Porin-like protein NicP [Pseudomonas putida (strain ATCC 
47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=430

 Score = 130 bits (327),  Expect = 1e-37
 Identities = 125/442 (28%), Positives = 195/442 (44%), Gaps = 56/442 (13%)

Query  13   INAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKK--KGLQDKN---SWVQSAML  67
            I A L + A A E     GF+EGA+ ++  RN F  RD    KG   ++    W Q  +L
Sbjct  20   IAAALCAEATAEEA----GFIEGARATLQARNYFFSRDYADIKGASTQSRTQEWAQGFIL  75

Query  68   NLESGFTQGPIGFAAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPYDQWTRGG  127
            N  SG+TQG +G    V G   FKL  +     S +    D  + A       D+++R G
Sbjct  76   NASSGYTQGTLGVGVDVTGLLGFKLDSSPEHARSGLLPSLDSGKSA-------DEYSRLG  128

Query  128  GFVKARASNTTLTYGTQVLDLPVLASMTTRNTPEYFEGTLITSHEIKDLELVAGKFTKNQ  187
              +K + S T L  G  + +LPVL     R  P  ++G ++ S E   L L AG+F    
Sbjct  129  AAIKFKVSQTELKVGELMPNLPVLLFSDLRLLPPTYQGAMLESREFAGLTLSAGQFRSTS  188

Query  188  LPEHIASDQN----------------GLDRAYVWGAKYKFND-QLNASYYGADIKDKIER  230
            L +   S +                   DR    GA Y FND + +   + A ++D  ++
Sbjct  189  LRDSSNSQKMYALVNDPINPARLARFTSDRFNYVGADYAFNDNRTSVGVWQAQLEDIYQQ  248

Query  231  HYVSAAYKQPLANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQ  290
             + S  + +PL +  +L    AGY    + G+ V           D +N+      +   
Sbjct  249  RFYSFKHAEPLGS-WTLGVN-AGYFDAREDGSKV---------AGDYDNHALFSLFSAKT  297

Query  291  GPHSVMGAYQQNTGGIGYDYGVNQDGGQSIYLPNSYLS-DFNSKGEKSVQLQYNLDLGAY  349
            G H+    YQQ    IG D G  Q G  +  + N+  + +F++ GE+S Q++++ +  A 
Sbjct  298  GGHTFYVGYQQ----IGGDDGFIQVGANTNPMGNTLPTYEFSAPGERSWQVRHDYNFVAL  353

Query  350  NVPGLKWTTAFVYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIRARYSILRES  409
             +PGL  T  +V G D++          ER+    L+Y VQSG    L IR R  + R  
Sbjct  354  GLPGLTSTLRYVKGRDVETGLGFEGRDRERDL--DLAYVVQSGPLAGLGIRVRNVMAR--  409

Query  410  DIGANGYGDTNETRIFIDFPIK  431
               +N   D +E R+ + + IK
Sbjct  410  ---SNYRTDIDENRLILSYTIK  428



Lambda      K        H        a         alpha
   0.316    0.134    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 458222


  Database: e175c2f2b673f1c329ac2da9bb68751e.SwissProt.fasta
    Posted date:  May 30, 2024  8:15 AM
  Number of letters in database: 1,283
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40