BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: a5b6425b9ce7eec2e1d1673b86210696.SwissProt.fasta
           2 sequences; 289 total letters



Query= ACIAD0252

Length=136
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O68823 DNA polymerase III subunit chi [Pseudomonas aeruginosa (st...  68.6    3e-20
P28905 DNA polymerase III subunit chi [Escherichia coli (strain K...  47.8    2e-12


>O68823 DNA polymerase III subunit chi [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 
12228 / 1C / PRS 101 / PAO1)]
Length=142

 Score = 68.6 bits (166),  Expect = 3e-20
 Identities = 37/131 (28%), Positives = 69/131 (53%), Gaps = 4/131 (3%)

Query  1    MTKISFYLFETSQ-ERQVESACRLCRKLVKQQQKLWWFCPDLELQKQLDERLWTFDRESF  59
            MT++ FY+  ++    +++ ACRL  K  +Q  +++  C D   + +LD RLW+F  E+F
Sbjct  1    MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF  60

Query  60   ITHGIDQPHAFVCISSHL---PTSKEWIVFNFNNQALEQMSEFSHIIEIIENTESAKQIG  116
            I H + +  A   ++  L   P +   ++ N   +A   +  FS + E++    + +Q  
Sbjct  61   IPHSLAEEDAEAPVALGLGEPPGNHRDLLINLTLEAPGFVPNFSRVAELVVEEPAIRQAA  120

Query  117  REKFKLYRRLG  127
            R+KF+ YR  G
Sbjct  121  RDKFRFYREQG  131


>P28905 DNA polymerase III subunit chi [Escherichia coli (strain 
K12)]
Length=147

 Score = 47.8 bits (112),  Expect = 2e-12
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 11/143 (8%)

Query  1    MTKISFYLFETSQERQVESA-----CRLCRKLVKQQQKLWWFCPDLELQKQLDERLWTFD  55
            M   +FYL +        SA     C +  +  +  +++   C D +   +LDE LW   
Sbjct  1    MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARP  60

Query  56   RESFITHGI--DQPHAFVCISSHLP----TSKEWIVFNFNNQALEQMSEFSHIIEIIENT  109
             ESF+ H +  + P     +    P    +S+  I+ +      +  + F+ +++ +   
Sbjct  61   AESFVPHNLAGEGPRGGAPVEIAWPQKRSSSRRDILISLRTSFADFATAFTEVVDFVPYE  120

Query  110  ESAKQIGREKFKLYRRLGVEPRT  132
            +S KQ+ RE++K YR  G    T
Sbjct  121  DSLKQLARERYKAYRVAGFNLNT  143



Lambda      K        H        a         alpha
   0.328    0.138    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 28884


  Database: a5b6425b9ce7eec2e1d1673b86210696.SwissProt.fasta
    Posted date:  May 9, 2024  4:34 PM
  Number of letters in database: 289
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40