BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: c7dd4d96f7007747fa34230dd831b6d4.SwissProt.fasta
           12 sequences; 6,216 total letters



Query= ACIAD0259

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P33639 Sensor protein kinase PilS [Pseudomonas aeruginosa (strain...  216     6e-67
O31661 Sporulation kinase E [Bacillus subtilis (strain 168)]          112     2e-29
P14377 Sensor protein ZraS [Escherichia coli (strain K12)]            105     2e-27
Q8X614 Sensor protein ZraS [Escherichia coli O157:H7]                 100     8e-26
P16497 Sporulation kinase A [Bacillus subtilis (strain 168)]          99.8    2e-25
P37461 Sensor protein ZraS [Salmonella typhimurium (strain LT2 / ...  97.8    5e-25
Q8Z332 Sensor protein ZraS [Salmonella typhi]                         97.4    7e-25
Q08430 Sporulation kinase B [Bacillus subtilis (strain 168)]          97.1    7e-25
Q9APE0 Sensor protein ZraS [Klebsiella oxytoca]                       95.9    2e-24
Q9I4N4 Sensor protein kinase FleS [Pseudomonas aeruginosa (strain...  90.1    1e-22
Q06067 Signal transduction histidine-protein kinase AtoS [Escheri...  85.9    6e-21
P35164 Sensor histidine kinase ResE [Bacillus subtilis (strain 168)]  85.1    1e-20


>P33639 Sensor protein kinase PilS [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=530

 Score = 216 bits (550),  Expect = 6e-67
 Identities = 164/513 (32%), Positives = 256/513 (50%), Gaps = 27/513 (5%)

Query  22   YTLYRFIIAFSLLLIFYITGGRVGSDYPQPDTYFYTLIAYTLINFIQGALFRFYPKWITQ  81
            Y LYR  I   L+L+              P+ +      Y + N +      F P   ++
Sbjct  20   YHLYRLTIGLVLVLLISSELEDQVLKLVHPELFHVGSWCYLVFNILVAL---FLPP--SR  74

Query  82   QLSSLFII---DIIALSFLTYAVGGPNLHLGLLYVVTVFSAAILLHARMSLVMTLLAVII  138
            QL  +FI+   D++ L  L YA GG    +G L VV V  A ILL  R+ LV+   A + 
Sbjct  75   QLLPIFILALTDVLMLCGLFYAGGGVPSGIGSLLVVAVAIANILLRGRIGLVIAAAASLG  134

Query  139  LVYQQIVIVLFNTDHLNAIGDSILLAFLFFVVYGIGQIAVRRFQILETITNYQSDILNQL  198
            L+Y    + L + D  N    +  L  L F    + Q  VRR +  ET+   +++ +  L
Sbjct  135  LLYLTFFLSLSSPDATNHYVQAGGLGTLCFAAALVIQALVRRQEQTETLAEERAETVANL  194

Query  199  QNINRYILDQVDDGYLVLDENYYVVVSNPAACNFLGIPPLFAHEQLTLAKVQPDLFEILK  258
            + +N  IL ++  G LV+D    ++++N AA   L    +   +  +L +  P L   +K
Sbjct  195  EELNALILQRMRTGILVVDSRQAILLANQAALGLLRQDDV---QGASLGRHSPMLMHCMK  251

Query  259  STNLQDGEKFNFESQLSTYQIHIRIQ----RLQIPKQSLILLTLQDTQKLNQHVQQLKLA  314
               L    +      L        +Q     L       +L+ L+D  ++ Q  QQ+KLA
Sbjct  252  QWRLNPSLR---PPTLKVVPDGPTVQPSFISLNREDDQHVLIFLEDISQIAQQAQQMKLA  308

Query  315  ALGQLSASIAHEIRNPLAAIAQANELFTDSDS--AQQKQLQYMIAKQTKRINSIIEDTLG  372
             LG+L+A IAHEIRNPL AI+ A +L  +S+   A  ++L  +I  Q+KR+N +IE+ L 
Sbjct  309  GLGRLTAGIAHEIRNPLGAISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQ  368

Query  373  MARNHATYPVVIQLTAFLYGLLEEDLTDVKD--QIRLVFSREDLQIIFDPSQLRQVLINL  430
            ++R     P  + L  +L   ++E    +++  Q+ L     D+Q   DP QL QVL NL
Sbjct  369  LSRRRQAEPQQLDLKEWLQRFVDEYPGRLRNDSQLHLQLGAGDIQTRMDPHQLNQVLSNL  428

Query  431  TRNALRHNAP----DAPFVEISVKENGDILWIDIIDYGDGVTKRNISQLFKPFFSTEIKG  486
             +N LR++A        ++ ++     D+  +++ID G GV    ++ LF+PFF+TE KG
Sbjct  429  VQNGLRYSAQAHGRGQVWLSLARDPESDLPVLEVIDDGPGVPADKLNNLFEPFFTTESKG  488

Query  487  TGLGLYLSHSLCEVNHAKLTYVEQEK-GACFRI  518
            TGLGLYLS  LCE N A++ Y  +E+ G CFRI
Sbjct  489  TGLGLYLSRELCESNQARIDYRNREEGGGCFRI  521


>O31661 Sporulation kinase E [Bacillus subtilis (strain 168)]
Length=738

 Score = 112 bits (280),  Expect = 2e-29
 Identities = 90/339 (27%), Positives = 176/339 (52%), Gaps = 36/339 (11%)

Query  211  DGYLVLDENYYVVVSNPAACNFLGIPPLFAHEQLTLAKVQPDLFEILKSTNLQD----GE  266
            DG ++ D  Y ++ +NP A + LG+    +HE++     Q  L +I+ +  +++      
Sbjct  404  DGNVLFDNQYRIIDANPLASHILGL----SHEEIK----QHSLLDIISAYEIENLASPAR  455

Query  267  KFNFE----------SQLSTYQIHIRIQRLQIPKQSL-ILLTLQDTQKLNQHVQQLK-LA  314
            + NF+          S     ++    +R  I   +L I   + + ++L + +++   L 
Sbjct  456  QINFDEMDNEIPFLLSSGDNRKLEFSFKRNIIQNMNLAIFKDVTERKELEERLRKSDTLH  515

Query  315  ALGQLSASIAHEIRNPLAAIAQANELFTDSDSAQQKQLQYMIAKQTKRINSIIEDTLGMA  374
             +G+L+A IAHEIRNP+ A+    +L   S          +I  + KRI SII + L +A
Sbjct  516  VVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSELKRIESIITEFLILA  575

Query  375  RNHATYPVVIQLTAFLYGLL-----EEDLTDVKDQIRLVFSREDLQIIF-DPSQLRQVLI  428
            +  A       +T  +   +     + +L++V+ Q+ L+   +D+  I+ +P+QL+QV I
Sbjct  576  KPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLI---DDIPPIYCEPNQLKQVFI  632

Query  429  NLTRNALRHNAPDAPFVEISVKE-NGDILWIDIIDYGDGVTKRNISQLFKPFFSTEIKGT  487
            N+ +NA+    PD   + +++K  + D + I + D G G+T+  + +L +PF++T+ +GT
Sbjct  633  NILKNAI-EVMPDGGNIFVTIKALDQDHVLISLKDEGIGMTEDKLKRLGEPFYTTKERGT  691

Query  488  GLGLYLSHSLCEVNHAKLTYVEQE-KGACFRIQCSIKEN  525
            GLGL +S+ + E +  ++    +E KG  F I   +++N
Sbjct  692  GLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLPVRQN  730


>P14377 Sensor protein ZraS [Escherichia coli (strain K12)]
Length=465

 Score = 105 bits (261),  Expect = 2e-27
 Identities = 89/313 (28%), Positives = 147/313 (47%), Gaps = 43/313 (14%)

Query  226  NPAACNFLGIPPLFAHEQLTLAKVQPDLFEILKSTNLQDGEKFN------------FESQ  273
            N   CN   +P + A + + +A    DL         Q GEK N              S 
Sbjct  163  NMPRCNGKAVPQVDAQQAIFIAVDASDLVAT------QSGEKRNTLIILFALATVLLASV  216

Query  274  LST--YQIHIRIQRLQIPKQSLILLTLQDTQKLNQHVQQLKLAALGQLSASIAHEIRNPL  331
            LS   Y+ ++R ++L           LQD  K  +     KL ALG L+A +AHEIRNPL
Sbjct  217  LSFFWYRRYLRSRQL-----------LQDEMKRKE-----KLVALGHLAAGVAHEIRNPL  260

Query  332  AAIAQANELFTDSDSA--QQKQLQYMIAKQTKRINSIIEDTLGMAR-NHATYPVVIQLTA  388
            ++I    + F +   A  +  QL  ++AK+  R+N ++ + L + +  H     V   T 
Sbjct  261  SSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTL  320

Query  389  FLYGL--LEEDLTDVKDQIRLVFSREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVE  446
              + L  + +D    + Q+R   +    +I  DP +L QVL+NL  NA++        + 
Sbjct  321  INHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHG-VIS  379

Query  447  ISVKENGDILWIDIIDYGDGVTKRNISQLFKPFFSTEIKGTGLGLYLSHSLCEVNHAKLT  506
            ++  E+G  + I + D G G+    +  +F P+F+T+ +GTGLGL + H++ E +   + 
Sbjct  380  VTASESGAGVKISVTDSGKGIAADQLDAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQ  439

Query  507  YVEQE-KGACFRI  518
               QE KG+ F +
Sbjct  440  VASQEGKGSTFTL  452


>Q8X614 Sensor protein ZraS [Escherichia coli O157:H7]
Length=458

 Score = 100 bits (248),  Expect = 8e-26
 Identities = 70/227 (31%), Positives = 117/227 (52%), Gaps = 12/227 (5%)

Query  298  LQDTQKLNQHVQQLKLAALGQLSASIAHEIRNPLAAIAQANELFTDSDSA--QQKQLQYM  355
            LQD  K  +     KL ALG L+A +AHEIRNPL++I    + F +   A  +  QL  +
Sbjct  225  LQDEMKRKE-----KLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQV  279

Query  356  IAKQTKRINSIIEDTLGMARNHATYPVVIQLTAFLYGLLEEDLTDVK-DQIRLVFSREDL  414
            +AK+  R+N ++ + L + +        + L   +   L+    D    +I+L F+  D 
Sbjct  280  MAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDT  339

Query  415  --QIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENGDILWIDIIDYGDGVTKRNI  472
              +I  DP +L QVL+NL  NA++        + ++  E+G  + I + D G G+    +
Sbjct  340  LPEIQADPDRLTQVLLNLYLNAIQAIGQHG-VISVTASESGAGVKISVTDSGKGIAADQL  398

Query  473  SQLFKPFFSTEIKGTGLGLYLSHSLCEVNHAKLTYVEQE-KGACFRI  518
              +F P+F+T+ +GTGLGL + H++ E +   +     E KGA F +
Sbjct  399  EAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTL  445


 Score = 18.1 bits (35),  Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 0/21 (0%)

Query  461  IDYGDGVTKRNISQLFKPFFS  481
            ID  DG     I + F+P F+
Sbjct  135  IDSADGEPVLEIYRQFQPMFA  155


>P16497 Sporulation kinase A [Bacillus subtilis (strain 168)]
Length=606

 Score = 99.8 bits (247),  Expect = 2e-25
 Identities = 68/213 (32%), Positives = 117/213 (55%), Gaps = 9/213 (4%)

Query  312  KLAALGQLSASIAHEIRNPLAAIAQANELFTDSDSAQQKQLQYMIAKQTKRINSIIEDTL  371
            KL+  GQL+A IAHEIRNPL AI    +L   +    +     ++  +  RI  I+ + L
Sbjct  392  KLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFD-IVFSELSRIELILSELL  450

Query  372  GMARNHAT----YPVVIQLTAFLYGLLEEDLTDVKDQIRLVFSREDLQIIFDPSQLRQVL  427
             +A+        Y  + +L   +  LLE         IR  + ++ + I  D +QL+QV 
Sbjct  451  MLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYINGDQNQLKQVF  510

Query  428  INLTRNALRHNAPDAPFVEISVKENGDILWIDIIDYGDGVTKRNISQLFKPFFSTEIKGT  487
            INL +NA+  + PD   V+I + E+   + + + D G+G+ ++ ++++ +PF +T+ KGT
Sbjct  511  INLIKNAVE-SMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTTKEKGT  569

Query  488  GLGLYLSHSLCEVNHAKLTYVEQ--EKGACFRI  518
            GLGL ++ ++ E NH  + +V+   EKG  F+I
Sbjct  570  GLGLMVTFNIIE-NHQGVIHVDSHPEKGTAFKI  601


>P37461 Sensor protein ZraS [Salmonella typhimurium (strain LT2 
/ SGSC1412 / ATCC 700720)]
Length=465

 Score = 97.8 bits (242),  Expect = 5e-25
 Identities = 67/214 (31%), Positives = 111/214 (52%), Gaps = 8/214 (4%)

Query  312  KLAALGQLSASIAHEIRNPLAAIAQANELFTDSDSA--QQKQLQYMIAKQTKRINSIIED  369
            KL A+G L+A +AHEIRNPL++I    + F +   A  +  +L  ++AK+  R+N ++ +
Sbjct  243  KLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRVVSE  302

Query  370  TLGMAR-NHATYPVV--IQLTAFLYGLLEEDLTDVKDQIRLVFSREDLQIIFDPSQLRQV  426
             L + +  H T   V    +      L+ +D    + Q+R   +    +I  DP +L QV
Sbjct  303  LLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRLTQV  362

Query  427  LINLTRNALRHNAPDAPFVEISVKENG-DILWIDIIDYGDGVTKRNISQLFKPFFSTEIK  485
            L+NL  NA+ H       + +  KE+G D + I + D G G+    +  +F P+F+T+  
Sbjct  363  LLNLYLNAI-HAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKAD  421

Query  486  GTGLGLYLSHSLCEVNHAKLTYVEQE-KGACFRI  518
            GTGLGL +  ++ E +   +     E KGA F I
Sbjct  422  GTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTI  455


 Score = 20.0 bits (40),  Expect = 2.5
 Identities = 14/58 (24%), Positives = 30/58 (52%), Gaps = 3/58 (5%)

Query  371  LGMARNHATYPVVIQLTAFLYGLLEEDLTDVKDQIRLVFSREDL--QIIFDPSQLRQV  426
            +GM  +HA    +++  A   G+L   +TD +  I +  S   +  + ++ PS++ Q+
Sbjct  68   MGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVI-ITHSNPGMVGKSLYSPSEMHQL  124


>Q8Z332 Sensor protein ZraS [Salmonella typhi]
Length=465

 Score = 97.4 bits (241),  Expect = 7e-25
 Identities = 67/214 (31%), Positives = 111/214 (52%), Gaps = 8/214 (4%)

Query  312  KLAALGQLSASIAHEIRNPLAAIAQANELFTDSDSA--QQKQLQYMIAKQTKRINSIIED  369
            KL A+G L+A +AHEIRNPL++I    + F +   A  +  +L  ++AK+  R+N ++ +
Sbjct  243  KLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRVVSE  302

Query  370  TLGMAR-NHATYPVV--IQLTAFLYGLLEEDLTDVKDQIRLVFSREDLQIIFDPSQLRQV  426
             L + +  H T   V    +      L+ +D    + Q+R   +    +I  DP +L QV
Sbjct  303  LLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRLTQV  362

Query  427  LINLTRNALRHNAPDAPFVEISVKENG-DILWIDIIDYGDGVTKRNISQLFKPFFSTEIK  485
            L+NL  NA+ H       + +  KE+G D + I + D G G+    +  +F P+F+T+  
Sbjct  363  LLNLYLNAI-HAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKAD  421

Query  486  GTGLGLYLSHSLCEVNHAKLTYVEQE-KGACFRI  518
            GTGLGL +  ++ E +   +     E KGA F I
Sbjct  422  GTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTI  455


 Score = 20.0 bits (40),  Expect = 2.5
 Identities = 14/58 (24%), Positives = 30/58 (52%), Gaps = 3/58 (5%)

Query  371  LGMARNHATYPVVIQLTAFLYGLLEEDLTDVKDQIRLVFSREDL--QIIFDPSQLRQV  426
            +GM  +HA    +++  A   G+L   +TD +  I +  S   +  + ++ PS++ Q+
Sbjct  68   MGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVI-ITHSNPGMVGKSLYSPSEMHQL  124


>Q08430 Sporulation kinase B [Bacillus subtilis (strain 168)]
Length=428

 Score = 97.1 bits (240),  Expect = 7e-25
 Identities = 62/230 (27%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query  290  KQSLILLTLQDTQKL-------NQHVQQLKLAALGQLSASIAHEIRNPLAAIAQANELFT  342
            + S++LL++   + +       +Q +   K+  + +L+AS+AHE+RNPL  +    +L  
Sbjct  179  RSSVLLLSIYIIESIAENIALRSQLIHSEKMTIVSELAASVAHEVRNPLTVVRGFVQLLF  238

Query  343  DSDSAQQKQ---LQYMIAKQTKRINSIIEDTLGMARNHATYPVVIQLTAFLY--GLLEED  397
            + ++ Q K     + ++  +  R   II + L MA+       V  L+A +     L   
Sbjct  239  NDETLQNKSSADYKKLVLSELDRAQGIITNYLDMAKQQLYEKEVFDLSALIKETSSLMVS  298

Query  398  LTDVKDQIRLVFSREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENGDILW  457
              + K       +  DL I  D ++L+Q +INL +N++         + IS K NG  + 
Sbjct  299  YANYKSVTVEAETEPDLLIYGDATKLKQAVINLMKNSIEAVPHGKGMIHISAKRNGHTIM  358

Query  458  IDIIDYGDGVTKRNISQLFKPFFSTEIKGTGLGLYLSHSLCEVNHAKLTY  507
            I+I D G G+T   + +L +P++S +  GTGLGL ++ S+ E +H  +++
Sbjct  359  INITDNGVGMTDHQMQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISF  408


 Score = 18.1 bits (35),  Expect = 9.9
 Identities = 25/127 (20%), Positives = 53/127 (42%), Gaps = 13/127 (10%)

Query  33   LLLIFYIT---GGRVGSDYPQPDTYFY---TLIAYTLINFIQGALFRFYPKWITQQLSSL  86
            ++ +FYI+   G  V +     +  FY    +  +TL+ F+      F  KW     +  
Sbjct  73   IICLFYISTASGLTVAASVLCFELLFYEPSAMFVFTLLPFLIIIPILFQKKWPFMSKAKK  132

Query  87   FIIDIIALS---FLTYAVGGPNLHLGLLYV----VTVFSAAILLHARMSLVMTLLAVIIL  139
             ++ ++      FL +A       L +L      + V+ AA+    R S+++  + +I  
Sbjct  133  LLLSLLISCVEIFLFFASSWILSALNILNFQKSGIFVYEAAVSGLFRSSVLLLSIYIIES  192

Query  140  VYQQIVI  146
            + + I +
Sbjct  193  IAENIAL  199


>Q9APE0 Sensor protein ZraS [Klebsiella oxytoca]
Length=462

 Score = 95.9 bits (237),  Expect = 2e-24
 Identities = 64/194 (33%), Positives = 103/194 (53%), Gaps = 7/194 (4%)

Query  312  KLAALGQLSASIAHEIRNPLAAIAQANELFTDSDSA--QQKQLQYMIAKQTKRINSIIED  369
            KL ALG L+A +AHEIRNPL++I    + F +   A  +  QL  ++A++  R+N ++ +
Sbjct  237  KLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPADGEAHQLALVMAREADRLNRVVSE  296

Query  370  TLGMARN-HATYPVVIQLTAFLYGLLEEDLTDVKDQIRLVFSREDL--QIIFDPSQLRQV  426
             L + R  H  Y  V       + L           I L F+ +    +I  DP +L+QV
Sbjct  297  LLELVRPAHLKYQSVDLNEVITHSLQLVSQDAASRAISLTFTAQPALCRIQADPDRLKQV  356

Query  427  LINLTRNALRHNAPDAPFVEISVKENGD-ILWIDIIDYGDGVTKRNISQLFKPFFSTEIK  485
            L+NL  NA+ H       + ++V+E GD  + + + D G G+T   +  +F P+FST+  
Sbjct  357  LLNLYLNAV-HAIGREGVITVAVRECGDGRVKVSVADSGKGMTAEQLQAIFTPYFSTKAD  415

Query  486  GTGLGLYLSHSLCE  499
            GTGLGL +  ++ E
Sbjct  416  GTGLGLAVVQNIVE  429


 Score = 19.2 bits (38),  Expect = 4.4
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query  371  LGMARNHATYPVVIQLTAFLYGLLEEDLTDVKDQIRLVFS--REDLQIIFDPSQLRQVLI  428
            +GM  +H+    +++  A+  G+L   +TD   +I +  S  R   + ++  S LR++ I
Sbjct  68   MGMRMHHSQLQTLLEEMAWQPGVLWFAVTDENGKI-IAHSDPRRVGESLYPASTLRELNI  126

Query  429  NLTRNALRHNAPDAPFVEI  447
                   R   P+ P +EI
Sbjct  127  GSEERWRRLEQPE-PALEI  144


 Score = 18.1 bits (35),  Expect = 9.9
 Identities = 14/35 (40%), Positives = 22/35 (63%), Gaps = 1/35 (3%)

Query  89   IDIIALSFLTYAVGGPNLHLGL-LYVVTVFSAAIL  122
            ++++ LS  + AVG   L  GL L +V +FSA I+
Sbjct  1    MNVMRLSKDSVAVGLSWLLTGLILLLVCLFSALIV  35


>Q9I4N4 Sensor protein kinase FleS [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=402

 Score = 90.1 bits (222),  Expect = 1e-22
 Identities = 82/336 (24%), Positives = 161/336 (48%), Gaps = 20/336 (6%)

Query  174  GQIAVRRFQILETITNYQSDILNQLQNINRYILDQVDDGYLVLDENYYVVVSNPAACNFL  233
            GQ+A+   Q +E +   +  + N+LQ++    LD +  G +V+D +  V  +NPAA   L
Sbjct  54   GQLALVSAQRMEELAEKER-LANRLQSL----LDLLPGGVIVIDAHGVVREANPAALGLL  108

Query  234  GIPPLFAHEQLTLAKVQPDLFEILKSTNLQDGEKFNFESQLSTYQIHIRIQRLQIPKQSL  293
            G P +    +  +A+      +     +L+DG + +  ++    +          P Q +
Sbjct  109  GEPLVGMLWREVIARCFAPREDDGHEISLRDGRRLSIATRSLNGE----------PGQLI  158

Query  294  ILLTLQDTQKLNQHV-QQLKLAALGQLSASIAHEIRNPL-AAIAQANELFTDS-DSAQQK  350
            +L  L DT++L + + +  +L+ALG++ AS+AH+IR PL AA+  A  L   +  + QQ+
Sbjct  159  LLNDLTDTRRLQEQLARHERLSALGRMVASLAHQIRTPLSAALLYAGHLSEQALPTDQQQ  218

Query  351  QLQYMIAKQTKRINSIIEDTLGMARNHATYPVVIQLTAFLYGLLEEDLTDVKD-QIRLVF  409
            +    + ++   +   + D L  AR        +   A    L       V+  Q+R   
Sbjct  219  RFAGRLKERLHELEHQVRDMLVFARGELPLTDRVAPKALFDSLRAAAEVHVQGLQVRWQC  278

Query  410  SREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENGDILWIDIIDYGDGVTK  469
                 +++ +   L   ++NL  NA++   P+   +++ +    D L + + D G G+  
Sbjct  279  EARGGELLCNRDTLVGTVLNLVENAIQACGPELR-LKVHLYARADSLRLSVSDNGPGMDP  337

Query  470  RNISQLFKPFFSTEIKGTGLGLYLSHSLCEVNHAKL  505
              +++L +PFF+T+  GTGLGL +  ++   +  +L
Sbjct  338  ATLARLGEPFFTTKTTGTGLGLAVVKAVARAHQGQL  373


 Score = 23.9 bits (50),  Expect = 0.16
 Identities = 10/18 (56%), Positives = 14/18 (78%), Gaps = 0/18 (0%)

Query  391  YGLLEEDLTDVKDQIRLV  408
            Y LLEE +T++K Q+ LV
Sbjct  42   YSLLEERVTELKGQLALV  59


>Q06067 Signal transduction histidine-protein kinase AtoS [Escherichia 
coli (strain K12)]
Length=608

 Score = 85.9 bits (211),  Expect = 6e-21
 Identities = 100/412 (24%), Positives = 178/412 (43%), Gaps = 48/412 (12%)

Query  121  ILLHARMSLVMTLLAVIILVYQQIVIVLFNTDHLNAIGDSILLAFLFFVVYGIGQIAVRR  180
            I++     L+++LL +++   +    +   TD L+ +  +I           + Q+    
Sbjct  192  IIIVLTAGLLISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTR--------LPQLPGEM  243

Query  181  FQILETITNYQSDILNQLQNINRYILDQVDDGYLVLDENYYVVVSNPAA--------CNF  232
             QI +++ N  +  L + + +N  I++   DG + +D    V   NPAA           
Sbjct  244  GQISQSVNNL-AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHEL  302

Query  233  LGIP--PLFAHEQLTLAKVQPDLFEILKSTNLQDGEKFNFESQLSTYQIHIRIQRLQIPK  290
            +G P   LF + Q         + + L+        + +F  +  T ++ +   R+    
Sbjct  303  VGQPYSMLFDNTQF-----YSPVLDTLEHGTEHVALEISFPGRDRTIELSVTTSRIHNTH  357

Query  291  QSLI--------LLTLQDTQKLNQHVQQLKLAALGQLSASIAHEIRNPLAAIAQANELFT  342
              +I        L   ++TQ+  +  Q  +LA LG+L A +AHE+RNPL AI    ++  
Sbjct  358  GEMIGALVIFSDLTARKETQR--RMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILR  415

Query  343  D--SDSAQQKQLQYMIAKQTKRINSIIEDTLGMARNHATYPVVIQLTAFLYGLLEEDLTD  400
               SD   Q+ L  ++ K+   IN +I+  L  +R   +    + L A    L+EE L  
Sbjct  416  QQTSDPIHQEYLS-VVLKEIDSINKVIQQLLEFSRPRHSQWQQVSLNA----LVEETLVL  470

Query  401  VKD---QIRLVF----SREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENG  453
            V+    Q R+ F      E   I  D   L+QVL+N+  NA++  +        + + + 
Sbjct  471  VQTAGVQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSD  530

Query  454  DILWIDIIDYGDGVTKRNISQLFKPFFSTEIKGTGLGLYLSHSLCEVNHAKL  505
                I I D G G+      ++F PFF+T+  GTGLGL LS  +   +   +
Sbjct  531  SQQAISIEDNGCGIDLSLQKKIFDPFFTTKASGTGLGLALSQRIINAHQGDI  582


>P35164 Sensor histidine kinase ResE [Bacillus subtilis (strain 
168)]
Length=589

 Score = 85.1 bits (209),  Expect = 1e-20
 Identities = 90/369 (24%), Positives = 168/369 (46%), Gaps = 39/369 (11%)

Query  173  IGQIAVRRFQILETITNYQSDILNQLQNINRYILDQVDDGYLVLDENYYVVVSNPAACNF  232
            IG++A   F  +    N+  + LNQ +     IL  + DG + ++ +  ++V+NP A  F
Sbjct  227  IGELATA-FNQMGRQLNFHINALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERF  285

Query  233  LGIPPLFAHEQLTLAKVQPDLFEILKSTNLQDGEKFNFESQLSTYQIHIRIQRLQIPKQS  292
            L     + +EQ            I +  NL    K  F++ +ST +  +    LQ     
Sbjct  286  L---QAWYYEQN---------MNIKEGDNLPPEAKELFQNAVSTEKEQMIEMTLQGRSWV  333

Query  293  LILLTLQDTQK-------LNQHVQQLKLAALGQ-LSASIAHEIRNPLAAIAQANELFTD-  343
            L++  L            L    ++ +L  L +   A+++HE+R P++ +   +E   D 
Sbjct  334  LLMSPLYAESHVRGAVAVLRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDD  393

Query  344  --SDSAQQKQLQYMIAKQTKRINSIIEDTLGMARNHATYPVV----IQLTAFLYGLLEED  397
              S    +K++  +I  ++ R+  ++ D L +AR  + +  +    I +  FL  ++ + 
Sbjct  394  IASSEEDRKEIAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKF  453

Query  398  LTDVKDQIRLV---FSREDLQIIFDPSQLRQVLINLTRNALRHNAPDAPFVEISVKENGD  454
                K++   +    S  + + +FD  ++ QV  NL  NALRH +     V ISV    D
Sbjct  454  SGVAKEKNIALDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGS-VSISVHSVKD  512

Query  455  ILWIDIIDYGDGVTKRNISQLFKPFFSTE------IKGTGLGLYLSHSLCEVNHAKLT-Y  507
             L IDI D G G+ + ++  +F+ F+  +        GTGLGL +  ++ E ++  +T +
Sbjct  513  GLKIDIKDSGSGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVH  572

Query  508  VEQEKGACF  516
               +KG  F
Sbjct  573  SRIDKGTTF  581



Lambda      K        H        a         alpha
   0.327    0.141    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 2656200


  Database: c7dd4d96f7007747fa34230dd831b6d4.SwissProt.fasta
    Posted date:  May 29, 2024  2:49 PM
  Number of letters in database: 6,216
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40