BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 34a0e3f739f8dacdf559df21a57ae1e6.SwissProt.fasta
7 sequences; 3,988 total letters
Query= ACIAD0293
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
P45790 Type II secretion system protein C [Aeromonas hydrophila] 58.5 2e-13
P45772 Type II secretion system protein C [Aeromonas salmonicida] 54.3 5e-12
Q52894 Probable periplasmic serine endoprotease DegP-like [Rhizob... 45.8 5e-09
O22609 Protease Do-like 1, chloroplastic [Arabidopsis thaliana] 42.4 6e-08
P54925 Probable periplasmic serine endoprotease DegP-like [Barton... 38.5 1e-06
Q80U72 Protein scribble homolog [Mus musculus] 37.7 2e-06
Q9ZMH8 Putative zinc metalloprotease jhp_0242 [Helicobacter pylor... 35.8 7e-06
>P45790 Type II secretion system protein C [Aeromonas hydrophila]
Length=290
Score = 58.5 bits (140), Expect = 2e-13
Identities = 61/277 (22%), Positives = 106/277 (38%), Gaps = 31/277 (11%)
Query 17 LDRLASVTLAVLILWLCWKLAALFWLLL--------APPQVMQFERVQLGSQQAQIPNIS 68
L R + +L+L L + A L W LL P Q GS + + IS
Sbjct 22 LSRFSQPLFWLLLLLLAHQCAGLTWRLLDLGSQQASQPWQPAMVASQGQGSARLDLSGIS 81
Query 69 SFALFNEPNVTNNAND---------QQNFELQGVMLAYPARFSSAVIKGKENADRYRIGD 119
+LF + A D Q N +L GV+ + S A+I + Y IGD
Sbjct 82 RLSLFGKAKQQAQAADAVAADAPKTQLNAQLNGVLASSDPAKSIAIIAHNGVQNSYGIGD 141
Query 120 AVDNSSYQLAEVYWDHVVLRQSNGATREIRFKGMEKGLYQPIVPPASATTSTTNDEHPSS 179
+D + ++ +V+ D V++ + +G + G E G P S+ E +
Sbjct 142 FIDGTQAKIRQVFADRVII-ERDGRDETLMLDGEEYGKPLPKPGNQDDKLSSVRSELLGN 200
Query 180 PPSASSAIGQAIQQMQQNRDQYLQNMGVSNSGEGYEVTDRTPSALKNTLGLRAGDRILSV 239
P + + + + V GY + + L N LGL A D +S+
Sbjct 201 PGKITDYLN-------------ISPVRVDGRMVGYRLNPGSNPELFNQLGLVANDMAVSI 247
Query 240 NGQRVGQGQNDVQLLEQARRDGQVKIEIKRGDQVMTI 276
NG + +Q ++Q ++ + ++R Q+ +
Sbjct 248 NGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDV 284
>P45772 Type II secretion system protein C [Aeromonas salmonicida]
Length=290
Score = 54.3 bits (129), Expect = 5e-12
Identities = 59/277 (21%), Positives = 107/277 (39%), Gaps = 31/277 (11%)
Query 17 LDRLASVTLAVLILWLCWKLAALFWLLL---APPQVMQFERVQLGSQ-----QAQIPNIS 68
L R + +L+L L + A L W LL + ++ GSQ + + +S
Sbjct 22 LSRFSQPLFWLLLLLLAHQCAGLTWRLLDLGSQQSSQPWQPAVAGSQGQGKARLDLGGVS 81
Query 69 SFALFNEPNVTNNAND---------QQNFELQGVMLAYPARFSSAVIKGKENADRYRIGD 119
ALF + A D Q N +L GV+ + S A+I + Y IGD
Sbjct 82 RLALFGKAKQQARAADAVAADAPKTQLNAQLNGVLASSDPAKSIAIIAHSGVQNSYGIGD 141
Query 120 AVDNSSYQLAEVYWDHVVLRQSNGATREIRFKGMEKGLYQPIVPPASATTSTTNDEHPSS 179
+D + ++ +V+ D V++ + + + G E G P S+ E +
Sbjct 142 FIDGTQAKVRQVFADRVII-ERDARDETLMLDGEEYGKPLPKQGNPDEKLSSVRSELLGN 200
Query 180 PPSASSAIGQAIQQMQQNRDQYLQNMGVSNSGEGYEVTDRTPSALKNTLGLRAGDRILSV 239
P + + + + V GY + + L N LGL A D +S+
Sbjct 201 PGKITDYLN-------------ISPVRVDGRMVGYRLNPGSNPELFNQLGLVANDMAVSI 247
Query 240 NGQRVGQGQNDVQLLEQARRDGQVKIEIKRGDQVMTI 276
NG + +Q ++Q ++ + ++R Q+ +
Sbjct 248 NGLDLRDNAQAMQAMQQVAGATEMTVTVERQGQLYDV 284
>Q52894 Probable periplasmic serine endoprotease DegP-like [Rhizobium
meliloti (strain 1021)]
Length=504
Score = 45.8 bits (107), Expect = 5e-09
Identities = 28/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query 177 PSSPPSASSAIGQAIQQMQQNRDQYLQNMGV----SNSGEGYEVTDRTPSALKNTLGLRA 232
PS + A G+A Q ++ L ++G+ S G+G + P + GL+
Sbjct 392 PSDAKEPAPATGEAQPDEGQAGEEALADLGLTVTPSEDGKGVTIASVDPDSDAGDRGLKE 451
Query 233 GDRILSVNGQRVGQGQNDVQLLEQARRDGQVK----IEIKRGDQVMTI 276
G++I+SVN Q V + ++++ A++DG+ K IE + G + + +
Sbjct 452 GEKIVSVNNQEVKSADDVLKVINNAKKDGRSKALFQIEAQEGSRFVAL 499
>O22609 Protease Do-like 1, chloroplastic [Arabidopsis thaliana]
Length=439
Score = 42.4 bits (98), Expect = 6e-08
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 15/84 (18%)
Query 199 DQYLQNMGVSNSGEGYEVTDRTPSALKNTLGLRA-----------GDRILSVNGQRVGQG 247
DQ ++ +GVS G V D PS GL++ GD I SVNG +V G
Sbjct 344 DQSVEQLGVS----GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG 399
Query 248 QNDVQLLEQARRDGQVKIEIKRGD 271
+ ++L+Q + +V +E+ RGD
Sbjct 400 SDLYRILDQCKVGDEVTVEVLRGD 423
>P54925 Probable periplasmic serine endoprotease DegP-like [Bartonella
henselae (strain ATCC 49882 / DSM 28221 / CCUG 30454
/ Houston 1)]
Length=503
Score = 38.5 bits (88), Expect = 1e-06
Identities = 26/101 (26%), Positives = 49/101 (49%), Gaps = 6/101 (6%)
Query 178 SSPPSASSAIGQAIQQMQQNRDQYLQNMGV----SNSGEGYEVTDRTPSALKNTLGLRAG 233
S P + G N D+ L++ G+ S+ G G VTD P + G+R G
Sbjct 392 SMPEDENMKDGSKYSNEHGNSDETLEDYGLIVAPSDDGVGLVVTDVDPDSDAADKGIRPG 451
Query 234 DRILSVNGQRVGQGQNDVQLLEQARRDGQ--VKIEIKRGDQ 272
D I++VN + V + + ++ A++ G+ + ++++ DQ
Sbjct 452 DVIVTVNNKSVKKVSDITDTIKNAQKLGRKAILLQVRTNDQ 492
Score = 27.3 bits (59), Expect = 0.004
Identities = 20/62 (32%), Positives = 37/62 (60%), Gaps = 10/62 (16%)
Query 193 QMQQNRDQYLQNMGVSNSGEGYEVTD--RTPSALKNTLGLRAGDRILSVNGQRVGQGQND 250
Q+Q + ++G+ + +G +TD + P+A G++AGD I+SVNG+++ ND
Sbjct 305 QIQPVTKEISDSIGLKEA-KGALITDPLKGPAA---KAGIKAGDVIISVNGEKI----ND 356
Query 251 VQ 252
V+
Sbjct 357 VR 358
>Q80U72 Protein scribble homolog [Mus musculus]
Length=1612
Score = 37.7 bits (86), Expect = 2e-06
Identities = 47/174 (27%), Positives = 67/174 (39%), Gaps = 30/174 (17%)
Query 101 FSSAVIKG--KENADRYRIGDAVDN-SSYQLAEVYWDHVV-LRQSNGATREIRFKGMEKG 156
F S + +G A ++GD V + + + E DH V L + T + + G
Sbjct 879 FISRIAEGGAAHRAGTLQVGDRVLSINGVDMTEARHDHAVSLLTAASPTISLLLERETGG 938
Query 157 LYQPIVPPAS---------ATTSTTNDEHPSSPPSASSAIGQAIQQMQQNRDQYLQN--- 204
Y P PP S AT ST P P + S + A++ + L
Sbjct 939 TYPPSPPPHSSPTPAATVAATVSTAVPGEPLLPRLSPSLLATALEGPYPVEEICLPRAGG 998
Query 205 -MGVSNSG-------------EGYEVTDRTPSALKNTLGLRAGDRILSVNGQRV 244
+G+S G G ++ P L GLR GDRIL+VNGQ V
Sbjct 999 PLGLSIVGGSDHSSHPFGVQDPGVFISKVLPRGLAARCGLRVGDRILAVNGQDV 1052
Score = 25.8 bits (55), Expect = 0.013
Identities = 15/43 (35%), Positives = 25/43 (58%), Gaps = 2/43 (5%)
Query 230 LRAGDRILSVNGQRVGQGQND--VQLLEQARRDGQVKIEIKRG 270
L+ GDR+LS+NG + + ++D V LL A + +E + G
Sbjct 895 LQVGDRVLSINGVDMTEARHDHAVSLLTAASPTISLLLERETG 937
Score = 23.5 bits (49), Expect = 0.071
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (12%)
Query 216 VTDRTPSALKNTLGLRAGDRILSVNG 241
V++ P+A G+R GD++L VNG
Sbjct 749 VSEEGPAA---RAGVRVGDKLLEVNG 771
Score = 19.2 bits (38), Expect = 1.5
Identities = 12/32 (38%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query 212 EGYEVTDRTPSALKNTLG-LRAGDRILSVNGQ 242
EG ++ +P+ G LR G R+L VN Q
Sbjct 1118 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQ 1149
Score = 18.5 bits (36), Expect = 2.6
Identities = 12/49 (24%), Positives = 22/49 (45%), Gaps = 9/49 (18%)
Query 180 PPSASSAIG---------QAIQQMQQNRDQYLQNMGVSNSGEGYEVTDR 219
PP S +G + +++QQ R Q L+ V++ + +DR
Sbjct 1356 PPKRVSLVGADDLRKMQEEEARKLQQKRAQMLREEAVTSGPDMGLASDR 1404
Score = 16.9 bits (32), Expect = 7.7
Identities = 7/15 (47%), Positives = 7/15 (47%), Gaps = 0/15 (0%)
Query 167 ATTSTTNDEHPSSPP 181
A S PSSPP
Sbjct 1418 AVPSHAGGSSPSSPP 1432
>Q9ZMH8 Putative zinc metalloprotease jhp_0242 [Helicobacter pylori
(strain J99 / ATCC 700824)]
Length=350
Score = 35.8 bits (81), Expect = 7e-06
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 4/52 (8%)
Query 225 KNTL--GLRAGDRILSVNGQRVGQGQNDVQLLEQARRDGQVKIEIKRGDQVM 274
KN L GL GDRILS+N Q++ + +++ AR G++ +EI+R +Q++
Sbjct 132 KNALEAGLLKGDRILSINHQKIASFREIREIV--ARSQGELILEIERNNQIL 181
Lambda K H a alpha
0.318 0.132 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 875840
Database: 34a0e3f739f8dacdf559df21a57ae1e6.SwissProt.fasta
Posted date: May 31, 2024 10:17 PM
Number of letters in database: 3,988
Number of sequences in database: 7
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
