BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ecd0fdd16f1aeda3cbe5bbaa00c097f5.SwissProt.fasta
           24 sequences; 32,699 total letters



Query= ACIAD0307

Length=1363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FF90 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2665    0.0  
B0VDI0 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2558    0.0  
B2I1Z1 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2558    0.0  
B7I360 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2558    0.0  
B7H1J8 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2558    0.0  
B0VLZ6 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2557    0.0  
A3M1G3 DNA-directed RNA polymerase subunit beta [Acinetobacter ba...  2546    0.0  
A5WH35 DNA-directed RNA polymerase subunit beta [Psychrobacter sp...  2117    0.0  
Q4FQH3 DNA-directed RNA polymerase subunit beta [Psychrobacter ar...  2114    0.0  
Q1Q8P9 DNA-directed RNA polymerase subunit beta [Psychrobacter cr...  2114    0.0  
B0KK60 DNA-directed RNA polymerase subunit beta [Pseudomonas puti...  1991    0.0  
Q88QP2 DNA-directed RNA polymerase subunit beta [Pseudomonas puti...  1990    0.0  
A5VXP0 DNA-directed RNA polymerase subunit beta [Pseudomonas puti...  1990    0.0  
B1JDX1 DNA-directed RNA polymerase subunit beta [Pseudomonas puti...  1988    0.0  
P19175 DNA-directed RNA polymerase subunit beta [Pseudomonas putida]  1937    0.0  
P0A8V2 DNA-directed RNA polymerase subunit beta [Escherichia coli...  1875    0.0  
P06173 DNA-directed RNA polymerase subunit beta [Salmonella typhi...  1872    0.0  
O86094 DNA-directed RNA polymerase subunit beta [Legionella pneum...  1842    0.0  
Q5E238 DNA-directed RNA polymerase subunit beta [Aliivibrio fisch...  1831    0.0  
P41184 DNA-directed RNA polymerase subunit beta [Buchnera aphidic...  1798    0.0  
B6J270 DNA-directed RNA polymerase subunit beta [Coxiella burneti...  1782    0.0  
Q59622 DNA-directed RNA polymerase subunit beta [Neisseria mening...  1757    0.0  
Q9KJM5 DNA-directed RNA polymerase subunit beta [Bartonella quint...  1511    0.0  
Q9KJG4 DNA-directed RNA polymerase subunit beta [Bartonella hense...  1510    0.0  


>Q6FF90 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=1362

 Score = 2665 bits (6908),  Expect = 0.0
 Identities = 1362/1362 (100%), Positives = 1362/1362 (100%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR
Sbjct  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV
Sbjct  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD
Sbjct  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP
Sbjct  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>B0VDI0 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain AYE)]
Length=1362

 Score = 2558 bits (6630),  Expect = 0.0
 Identities = 1294/1362 (95%), Positives = 1335/1362 (98%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEKVPVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>B2I1Z1 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain ACICU)]
Length=1362

 Score = 2558 bits (6630),  Expect = 0.0
 Identities = 1294/1362 (95%), Positives = 1335/1362 (98%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEKVPVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>B7I360 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain AB0057)]
Length=1362

 Score = 2558 bits (6630),  Expect = 0.0
 Identities = 1294/1362 (95%), Positives = 1335/1362 (98%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEKVPVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>B7H1J8 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain AB307-0294)]
Length=1362

 Score = 2558 bits (6630),  Expect = 0.0
 Identities = 1294/1362 (95%), Positives = 1335/1362 (98%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEKVPVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>B0VLZ6 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain SDF)]
Length=1362

 Score = 2557 bits (6627),  Expect = 0.0
 Identities = 1293/1362 (95%), Positives = 1335/1362 (98%), Gaps = 0/1362 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEK+PVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKLPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKVVDGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVVDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362


>A3M1G3 DNA-directed RNA polymerase subunit beta [Acinetobacter 
baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC 
KC755 / 5377)]
Length=1357

 Score = 2546 bits (6599),  Expect = 0.0
 Identities = 1287/1357 (95%), Positives = 1330/1357 (98%), Gaps = 0/1357 (0%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRKNFGKLP VMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV
Sbjct  1     MAYSYTEKKRIRKNFGKLPQVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120
             FPIESYSGNAALEFVEY LGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR
Sbjct  61    FPIESYSGNAALEFVEYSLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETKSIKDVR  120

Query  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180
             EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP
Sbjct  121   EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARIIP  180

Query  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGSYQ  240
             YRGSWLDFEFDAKDLVYVRIDRRRKLLA+V+LRALGYNN QIL+LFYEKVPVYLD GSYQ
Sbjct  181   YRGSWLDFEFDAKDLVYVRIDRRRKLLATVVLRALGYNNEQILNLFYEKVPVYLDMGSYQ  240

Query  241   IDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYERIT  300
             IDLVPERLRGEMAQFDI DN+GKVIVEQGKRINARHVRQMEA+GLTKLSVPDEYLYERIT
Sbjct  241   IDLVPERLRGEMAQFDITDNEGKVIVEQGKRINARHVRQMEAAGLTKLSVPDEYLYERIT  300

Query  301   AEDITLRDGDVIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADTTMGR  360
             AEDITLRDG+VIAANTLLSHE+MVKLAEGGVKQFNIL+TNDID GSFVADTLRAD T  R
Sbjct  301   AEDITLRDGEVIAANTLLSHEVMVKLAEGGVKQFNILFTNDIDRGSFVADTLRADLTRDR  360

Query  361   EDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420
             E+ALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ
Sbjct  361   EEALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEVGTDQ  420

Query  421   KSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480
             KSREVEGILS+EDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV
Sbjct  421   KSREVEGILSHEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVGLVRV  480

Query  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540
             ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS
Sbjct  481   ERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVS  540

Query  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600
             ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY
Sbjct  541   ALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFLETPY  600

Query  601   RKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPPEKVT  660
             RKV+DGRV+DDVEYLSAIEEVGTVIAQADSAVD DG+L EE VSVRHQGEFVRMPPEKVT
Sbjct  601   RKVIDGRVTDDVEYLSAIEEVGTVIAQADSAVDKDGNLTEEFVSVRHQGEFVRMPPEKVT  660

Query  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEANVARD  720
             HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGMEANVARD
Sbjct  661   HMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMEANVARD  720

Query  721   SGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQKVLV  780
             SGVCVIA RGG+IE+VDASR+VIRVNE+EM+AGEAGVDIYNLIKYTRSNQNTCINQ V+V
Sbjct  721   SGVCVIANRGGVIEYVDASRIVIRVNEDEMVAGEAGVDIYNLIKYTRSNQNTCINQNVIV  780

Query  781   NLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840
             NLGDKV RGD+LADGPSTD GELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI
Sbjct  781   NLGDKVARGDILADGPSTDMGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDRLTSI  840

Query  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900
             HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG
Sbjct  841   HIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKVTPKG  900

Query  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960
             ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA
Sbjct  901   ETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALAIEKA  960

Query  961   QLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELVDLLD  1020
             QLD+YRKDLKEEYKIFEEAARER++RLL GQESNGGG+TKRGDKLS+D+LSGLELVDLL+
Sbjct  961   QLDSYRKDLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLSEDLLSGLELVDLLE  1020

Query  1021  IQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080
             IQP DE IAERL+QIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR
Sbjct  1021  IQPADEAIAERLTQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLAVKRR  1080

Query  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILETHLGL  1140
             IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVD+VLNPLGVPSRMNVGQILETHLG+
Sbjct  1081  IQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVPSRMNVGQILETHLGM  1140

Query  1141  AAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLRKGVP  1200
             AAKGLG++I+KML++QRT+ ELR FLDKIYNKVGGEQE+LD+LTDEEIL LAGNLR GVP
Sbjct  1141  AAKGLGDKIEKMLKEQRTVLELREFLDKIYNKVGGEQEDLDSLTDEEILALAGNLRAGVP  1200

Query  1201  LATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260
             LATPVFDGAEE QIK+LLELA++ RTGQ +LFDGRTGEQFDRPVTVGYMYMLKLNHLVDD
Sbjct  1201  LATPVFDGAEESQIKDLLELADISRTGQTVLFDGRTGEQFDRPVTVGYMYMLKLNHLVDD  1260

Query  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320
             KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR
Sbjct  1261  KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGR  1320

Query  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIE  1357
             TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINI+
Sbjct  1321  TRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINID  1357


>A5WH35 DNA-directed RNA polymerase subunit beta [Psychrobacter 
sp. (strain PRwf-1)]
Length=1372

 Score = 2117 bits (5484),  Expect = 0.0
 Identities = 1064/1372 (78%), Positives = 1200/1372 (87%), Gaps = 10/1372 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F +LP VMD PYLL+IQVDSY  FLQ+ K PK RE+ GLQAAF S+
Sbjct  1     MAYSYTEKKRIRKSFAELPHVMDIPYLLAIQVDSYEQFLQENKKPKARENTGLQAAFSSI  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK------  114
             FPIES S NA L+FVEY LG PEFD RECI RGST+AAP+RVKIRL+IKD+++K      
Sbjct  61    FPIESNSNNAELQFVEYYLGAPEFDERECISRGSTFAAPLRVKIRLVIKDKDSKDKNSKA  120

Query  115   SIKDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLY  174
             +IKD+REQ VYMGEIPLMT+NGTF+INGTERVIVSQLHRSPGVFFDHDKGK+HSSGKVLY
Sbjct  121   AIKDIREQNVYMGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY  180

Query  175   SARIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYL  234
             +ARIIPYRGSWLDFEFDAKDLV+ RIDRRRKLL ++ILRALG +  +ILD F+EKV VY 
Sbjct  181   NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLGTIILRALGMDTNEILDTFFEKVSVYK  240

Query  235   DFGSYQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEY  294
                 ++IDLV +RLRGEMAQFDI   DG+V+VEQGKRINAR +RQ+E SG+ KL+VPDEY
Sbjct  241   GEEQFEIDLVADRLRGEMAQFDIVSPDGEVLVEQGKRINARRIRQIEQSGMKKLAVPDEY  300

Query  295   LYERITAEDITLRDGDVIAANTLLSHEIMVKL----AEGGVKQFNILYTNDIDHGSFVAD  350
             LYERI AEDI + D  +  ANTL+ HE++VKL    A   +K+F IL+TNDIDHG+++AD
Sbjct  301   LYERILAEDIVVNDEVIAKANTLIDHELLVKLSAFEASESIKEFKILFTNDIDHGTYIAD  360

Query  351   TLRADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRL  410
             TLRAD+T  RE+AL+EIYKVMRPGEPPT + AE LF ++FF+++RYDLS VGRMKFNRRL
Sbjct  361   TLRADSTGSREEALIEIYKVMRPGEPPTIDTAEKLFESMFFNADRYDLSNVGRMKFNRRL  420

Query  411   GRPYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTE  470
             GR +E   D   +  + +L+ +DIIDVL+ L+ IRNG GEVDDIDHLGNRR+RSVGEM E
Sbjct  421   GRTFENTDDPDIKREQSVLTKDDIIDVLKELINIRNGIGEVDDIDHLGNRRIRSVGEMAE  480

Query  471   NQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPL  530
             NQFRVGLVRVERAVKERLS AE+DNLSPQDLIN+KPVAAA+KEFFGSSQLSQFMDQNNPL
Sbjct  481   NQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQNNPL  540

Query  531   SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKA  590
             SEITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ +AK 
Sbjct  541   SEITHKRRISALGPGGLTRERAGFEVRDVHNTHYGRVCPIETPEGPNIGLINSLATFAKT  600

Query  591   NDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGE  650
             N+FGFLETPYRKVVDG+V+DD+EYLSAIEEVGTVIAQADS +D +G L EEMV VR  GE
Sbjct  601   NEFGFLETPYRKVVDGKVTDDIEYLSAIEEVGTVIAQADSELDENGVLAEEMVMVRSGGE  660

Query  651   FVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVG  710
              VRMP +KVTHMDVS  QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVG
Sbjct  661   SVRMPSDKVTHMDVSPSQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVG  720

Query  711   TGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQ  770
             TGME +VARDSGVCVIA+RGG+IE VDASR+V+RVNE+EM AGEAG+DIYNLIKYTRSNQ
Sbjct  721   TGMERHVARDSGVCVIARRGGVIEDVDASRIVVRVNEDEMQAGEAGIDIYNLIKYTRSNQ  780

Query  771   NTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSER  830
             NTCINQ+++VN GD++  GD+LADGPSTD GELALGQNMRVAFM WNGYN+EDSILLSER
Sbjct  781   NTCINQRIIVNQGDEIAGGDILADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILLSER  840

Query  831   VLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGD  890
             V++EDR T+IHIQEL+CVARDTKLG EEITADIPNVGEAALS LDESGIVYIGAEV AGD
Sbjct  841   VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSALDESGIVYIGAEVDAGD  900

Query  891   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEK  950
             ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKD+SLRVP+ TKGTVIDVQVFTRDG+EK
Sbjct  901   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSTKGTVIDVQVFTRDGVEK  960

Query  951   DDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVL  1010
             D RA +IEK+QLD YRKDLKEE +IFEEAAR RI  LL+GQ  +GG   K G  L++  L
Sbjct  961   DARAKSIEKSQLDNYRKDLKEELRIFEEAARSRISHLLDGQAISGGAGLKSGTVLAESEL  1020

Query  1011  SGLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKV  1070
               + L  LLDIQP +E IAERL+QIQ FL +K  +ID KFAEKKRKL  GD+L  GV K+
Sbjct  1021  LEMSLETLLDIQPVEEEIAERLTQIQEFLVDKQKDIDTKFAEKKRKLTAGDDLAHGVQKI  1080

Query  1071  VKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNV  1130
             VKVYLAVKRRIQPGDKMAGRHGNKGVVS I+PVEDMP+D NG PVD+VLNPLGVPSRMN+
Sbjct  1081  VKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNPVDIVLNPLGVPSRMNI  1140

Query  1131  GQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILV  1190
             GQ+LETHLG+AAKGLG++I+ M++ Q  + ELR FLDKIYNKVGGEQ +LD+L+D++I  
Sbjct  1141  GQVLETHLGMAAKGLGDKINGMIKAQAAVTELREFLDKIYNKVGGEQVDLDSLSDDDIRA  1200

Query  1191  LAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMY  1250
             LA NLR GVP+ T VFDGA E QI ELLELA  P +GQQ L+DGRTG++FDRPVTVGYMY
Sbjct  1201  LAQNLRDGVPMGTAVFDGAREVQIDELLELAGYPSSGQQTLYDGRTGQKFDRPVTVGYMY  1260

Query  1251  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML  1310
             MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA YTLQEML
Sbjct  1261  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEML  1320

Query  1311  TVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TVKSDDVEGRTR+YKNIVDG  YMDPGMPESFNVLTKEI+SLGINIELK  +
Sbjct  1321  TVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKESN  1372


>Q4FQH3 DNA-directed RNA polymerase subunit beta [Psychrobacter 
arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=1372

 Score = 2114 bits (5478),  Expect = 0.0
 Identities = 1059/1369 (77%), Positives = 1206/1369 (88%), Gaps = 10/1369 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F +LP+VMD PYLLSIQVDSY  FLQ+ K PK RE+ GLQAA+ S+
Sbjct  1     MAYSYTEKKRIRKSFAELPTVMDIPYLLSIQVDSYEQFLQEHKKPKARENTGLQAAYSSI  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK------  114
             FPIES+SGNA L+FVEY LG PEFD RECILRGST+AAPMRVKIRLIIKD+++K      
Sbjct  61    FPIESHSGNAELQFVEYYLGTPEFDERECILRGSTFAAPMRVKIRLIIKDKDSKDKDSKA  120

Query  115   SIKDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLY  174
             +IKD+REQ VYMGE+PLMT NGTF+INGTERVIVSQLHRSPGVFFDHDKGK+HSSGKVLY
Sbjct  121   AIKDIREQSVYMGEMPLMTANGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY  180

Query  175   SARIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYL  234
             +ARIIPYRGSWLDFEFDAKDLV+ RIDRRRKLLAS+ILRALG + ++ILDLF++KV VY 
Sbjct  181   NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLASIILRALGLSTSEILDLFFDKVKVYK  240

Query  235   DFGSYQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEY  294
                 ++IDLV +RLRGEMAQFDI   +G V+VEQGKRINAR +RQ+E +G+TK+S+PDEY
Sbjct  241   GEEQFEIDLVADRLRGEMAQFDIVTPEGDVVVEQGKRINARRIRQLEEAGMTKISIPDEY  300

Query  295   LYERITAEDITLRDGDVIAANTLLSHEIMVKL----AEGGVKQFNILYTNDIDHGSFVAD  350
             LYERI AEDI + D  +  ANTL+ HE++VKL    A   +K+F+IL+TNDID GS++AD
Sbjct  301   LYERILAEDIIVNDEVIARANTLIDHELLVKLSAFEASESIKEFSILFTNDIDQGSYIAD  360

Query  351   TLRADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRL  410
             TLRAD+T  RE+AL+EIYKVMRPGEPPT E AE LF+++FF+++RYDLS VGRMKFNRRL
Sbjct  361   TLRADSTSSREEALIEIYKVMRPGEPPTVETAEKLFDSMFFNADRYDLSNVGRMKFNRRL  420

Query  411   GRPYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTE  470
             G  +    D   +    +L+N DI++VL+ L+EIRNG+GEVDDIDHLGNRR+RSVGEM E
Sbjct  421   GLDFVDTDDADIQRERSVLTNADIVNVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMAE  480

Query  471   NQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPL  530
             NQFRVGLVRVERAVKERLS AE+DNLSPQDLIN+KPVAAA+KEFFGSSQLSQFMDQNNPL
Sbjct  481   NQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQNNPL  540

Query  531   SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKA  590
             SE+THKRRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ +AK 
Sbjct  541   SEVTHKRRVSALGPGGLTRERAGFEVRDVHDTHYGRVCPIETPEGPNIGLINSLATFAKT  600

Query  591   NDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGE  650
             N FGFLETPYR+VVDG+V+D +EYLSAIEEVGTVIAQADS V ADG L +EMVSVR  GE
Sbjct  601   NSFGFLETPYRRVVDGKVTDVIEYLSAIEEVGTVIAQADSPVTADGALSDEMVSVRSYGE  660

Query  651   FVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVG  710
             FVRMPPEKVTHMDVS  QVVSVAA LIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVG
Sbjct  661   FVRMPPEKVTHMDVSPSQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVG  720

Query  711   TGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQ  770
             TGME +VARDSGVCVIAKRGG+IE VDASR+V+RVNE EMIAGEAG+DIYNL+KYTRSNQ
Sbjct  721   TGMERHVARDSGVCVIAKRGGVIEDVDASRIVVRVNEAEMIAGEAGIDIYNLVKYTRSNQ  780

Query  771   NTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSER  830
             NTCINQ+++VN GD++  GD+LADGPSTD GELALGQN+R+AFM WNGYN+EDSILLSE+
Sbjct  781   NTCINQRIIVNQGDEIAFGDILADGPSTDLGELALGQNIRIAFMPWNGYNFEDSILLSEK  840

Query  831   VLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGD  890
             V++EDR T+IHIQEL+CVARDTKLG EEITADIPNVGEAALS LDE+GIVYIGAEV AGD
Sbjct  841   VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSSLDEAGIVYIGAEVDAGD  900

Query  891   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEK  950
             ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKD+SLRVP+ +KGTVIDVQVFTRDG+EK
Sbjct  901   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSSKGTVIDVQVFTRDGVEK  960

Query  951   DDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVL  1010
             D RA AIEK+QLD+YRKDLKEE +IFEEAAR RI  LL+GQ+ +GG   K G  ++   +
Sbjct  961   DARARAIEKSQLDSYRKDLKEELRIFEEAARGRIGNLLDGQKVSGGSGLKAGTIMALADM  1020

Query  1011  SGLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKV  1070
               + L  LLDIQP +E I+ERL+QI  +L +K  +ID KFAEKKRKL  GD+L  GV K+
Sbjct  1021  KDMSLETLLDIQPVEEEISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQHGVQKI  1080

Query  1071  VKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNV  1130
             VKVYLAVKRRIQPGDKMAGRHGNKGVVS I+PVEDMP+D +G  VD+VLNPLGVPSRMN+
Sbjct  1081  VKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDEHGNTVDIVLNPLGVPSRMNI  1140

Query  1131  GQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILV  1190
             GQ+LETHLG+AAKGLGE+ID ML+ Q  I +LR FLDKIYN+VGGEQ +LD+LTD++I+ 
Sbjct  1141  GQVLETHLGMAAKGLGEKIDGMLKSQAAIKDLREFLDKIYNQVGGEQVDLDSLTDDDIMA  1200

Query  1191  LAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMY  1250
             LA NLR GVP+ T VFDGA+E Q+K+LLELA + R GQQ L+DGRTG++FDR VTVGYMY
Sbjct  1201  LADNLRAGVPMGTAVFDGAKESQVKDLLELAGMDRDGQQTLYDGRTGQKFDRKVTVGYMY  1260

Query  1251  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML  1310
             MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA YTLQEML
Sbjct  1261  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEML  1320

Query  1311  TVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             TVKSDDVEGRTR+YKNIVDG  YMDPGMPESFNVLTKEI+SLGINIELK
Sbjct  1321  TVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELK  1369


>Q1Q8P9 DNA-directed RNA polymerase subunit beta [Psychrobacter 
cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 
/ K5)]
Length=1372

 Score = 2114 bits (5477),  Expect = 0.0
 Identities = 1060/1372 (77%), Positives = 1205/1372 (88%), Gaps = 10/1372 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F +LP+VMD PYLLSIQVDSY  FLQ+ K PK RE+ GLQAA+ S+
Sbjct  1     MAYSYTEKKRIRKSFAELPTVMDIPYLLSIQVDSYEQFLQEHKKPKARENTGLQAAYSSI  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK------  114
             FPIES+SGNA L+FVEY LG PEFD RECILRGST+AAPMRVKIRLIIKD+++K      
Sbjct  61    FPIESHSGNAELQFVEYYLGTPEFDERECILRGSTFAAPMRVKIRLIIKDKDSKDKDSKA  120

Query  115   SIKDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLY  174
             +IKD+REQ VYMGE+PLMT NGTF+INGTERVIVSQLHRSPGVFFDHDKGK+HSSGKVLY
Sbjct  121   AIKDIREQSVYMGEMPLMTANGTFIINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLY  180

Query  175   SARIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYL  234
             +ARIIPYRGSWLDFEFDAKDLV+ RIDRRRKLLAS+ILRALG + ++ILDLF++KV VY 
Sbjct  181   NARIIPYRGSWLDFEFDAKDLVFARIDRRRKLLASIILRALGLSTSEILDLFFDKVRVYK  240

Query  235   DFGSYQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEY  294
                 ++IDLV +RLRGEMAQFDI    G V+VEQGKRINAR +RQ+E +G+TK+S+PDEY
Sbjct  241   GEEQFEIDLVADRLRGEMAQFDIVTPAGDVVVEQGKRINARRIRQLEEAGMTKISIPDEY  300

Query  295   LYERITAEDITLRDGDVIAANTLLSHEIMVKL----AEGGVKQFNILYTNDIDHGSFVAD  350
             LYERI AEDI + D  +  ANTL+ HE++VKL    A   +K+F+IL+TNDID GS++AD
Sbjct  301   LYERILAEDIIVNDEVIARANTLIDHELLVKLSAFEASESIKEFSILFTNDIDQGSYIAD  360

Query  351   TLRADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRL  410
             TLRAD+T  RE+AL+EIYKVMRPGEPPT E AE LF+++FF+++RYDLS VGRMKFNRRL
Sbjct  361   TLRADSTSSREEALIEIYKVMRPGEPPTVETAEKLFDSMFFNADRYDLSNVGRMKFNRRL  420

Query  411   GRPYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTE  470
             G  +    D   +    +L+N DI++VL+ L+EIRNG+GEVDDIDHLGNRR+RSVGEM E
Sbjct  421   GLDFVDTDDADIQRERSVLTNADIVNVLKELIEIRNGRGEVDDIDHLGNRRIRSVGEMAE  480

Query  471   NQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPL  530
             NQFRVGLVRVERAVKERLS AE+DNLSPQDLIN+KPVAAA+KEFFGSSQLSQFMDQNNPL
Sbjct  481   NQFRVGLVRVERAVKERLSSAESDNLSPQDLINSKPVAAAVKEFFGSSQLSQFMDQNNPL  540

Query  531   SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKA  590
             SE+THKRRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ +AK 
Sbjct  541   SEVTHKRRVSALGPGGLTRERAGFEVRDVHDTHYGRVCPIETPEGPNIGLINSLATFAKT  600

Query  591   NDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGE  650
             N FGFLETPYR+VVDG+V+D +EYLSAIEEVGTVIAQADS V ADG L +EMVSVR  GE
Sbjct  601   NSFGFLETPYRRVVDGKVTDVIEYLSAIEEVGTVIAQADSPVTADGALSDEMVSVRSYGE  660

Query  651   FVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVG  710
             FVRMPPEKVTHMDVS  QVVSVAA LIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVG
Sbjct  661   FVRMPPEKVTHMDVSPSQVVSVAAGLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVG  720

Query  711   TGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQ  770
             TGME +VARDSGVCVIAKRGG+IE VDASRVV+RVNE+EMIAGEAG+DIYNL+KYTRSNQ
Sbjct  721   TGMERHVARDSGVCVIAKRGGVIEDVDASRVVVRVNEDEMIAGEAGIDIYNLVKYTRSNQ  780

Query  771   NTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSER  830
             NTCINQ+++VN GD +  GD+LADGPSTD GELALGQN+R+AFM WNGYN+EDSILLSE+
Sbjct  781   NTCINQRIIVNQGDAIAVGDILADGPSTDLGELALGQNIRIAFMPWNGYNFEDSILLSEK  840

Query  831   VLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGD  890
             V++EDR T+IHIQEL+CVARDTKLG EEITADIPNVGEAALS LDE+GIVYIGAEV AGD
Sbjct  841   VVKEDRFTTIHIQELTCVARDTKLGTEEITADIPNVGEAALSSLDEAGIVYIGAEVDAGD  900

Query  891   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEK  950
             ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKD+SLRVP+ +KGTVIDVQVFTRDG+EK
Sbjct  901   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPTSSKGTVIDVQVFTRDGVEK  960

Query  951   DDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVL  1010
             D RA AIEK+QLD+YRKDLKEE +IFEEAAR RI  LL+GQ+ +GG   K G  ++   +
Sbjct  961   DARARAIEKSQLDSYRKDLKEELRIFEEAARGRIGNLLDGQKVSGGSGLKAGTVMALADM  1020

Query  1011  SGLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKV  1070
               + L  LLDIQP +E I+ERL+QI  +L +K  +ID KFAEKKRKL  GD+L  GV K+
Sbjct  1021  KDMSLETLLDIQPVEEEISERLTQIAEYLVDKQKDIDVKFAEKKRKLTAGDDLQHGVQKI  1080

Query  1071  VKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNV  1130
             VKVYLAVKRRIQPGDKMAGRHGNKGVVS I+PVEDMP+D NG  VD+VLNPLGVPSRMN+
Sbjct  1081  VKVYLAVKRRIQPGDKMAGRHGNKGVVSRIMPVEDMPYDENGNTVDIVLNPLGVPSRMNI  1140

Query  1131  GQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILV  1190
             GQ+LETHLG+AAKGLGE+ID ML+ Q  I +LR FLDKIYN+VGGEQ +LD+L+D++I+ 
Sbjct  1141  GQVLETHLGMAAKGLGEKIDGMLKSQAAIKDLRDFLDKIYNQVGGEQVDLDSLSDDDIMA  1200

Query  1191  LAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMY  1250
             LA NLR GVP+ T VFDGA E Q+K+LLELA + R GQQ L+DGRTG++FDR VTVGYMY
Sbjct  1201  LADNLRAGVPMGTAVFDGARESQVKDLLELAGMDRDGQQTLYDGRTGQKFDRKVTVGYMY  1260

Query  1251  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML  1310
             MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA YTLQEML
Sbjct  1261  MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEML  1320

Query  1311  TVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKNGD  1362
             TVKSDDVEGRTR+YKNIVDG  YMDPGMPESFNVLTKEI+SLGINIELK  +
Sbjct  1321  TVKSDDVEGRTRMYKNIVDGEQYMDPGMPESFNVLTKEIKSLGINIELKQSN  1372


>B0KK60 DNA-directed RNA polymerase subunit beta [Pseudomonas 
putida (strain GB-1)]
Length=1357

 Score = 1991 bits (5158),  Expect = 0.0
 Identities = 1001/1363 (73%), Positives = 1167/1363 (86%), Gaps = 12/1363 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F KLP VMD PYLL+IQ+DSYR FLQ G S  +  D+GL AAF+SV
Sbjct  1     MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI SYSGNAALE+V Y LG+P FDV+EC+LRG T+A P+RVK+RLII D+E+  K+IKD
Sbjct  61    FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD+GKTHSSGK+LYSARI
Sbjct  121   IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD V+VRIDRRRKL ASV+LRALGY+  ++L+ FY     ++    
Sbjct  181   IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++LVP+RLRGE+A  DI D  GKVIVEQG+RI ARH+ Q+E +G+ +L VP EY+  R
Sbjct  241   LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR  300

Query  299   ITAEDITL-RDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              TA+ I     G+++A  NT ++ E+++K+A+  V +   LYTNDID G F++DTL+ DT
Sbjct  301   TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  + +ALVEIY++MRPGEPPTK+AAE LFNNLFFS+ERYDLS VGRMKFNRR+GR    
Sbjct  361   TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE  420

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        G+LS EDI++VL+TLV+IRNGKG VDDIDHLGNRRVR VGEM ENQFRVG
Sbjct  421   GS--------GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVG  472

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS AE++ L PQDLINAKPVAAA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  473   LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHK  532

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ YA+ N +GFL
Sbjct  533   RRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFL  592

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             E+PYR V +G VSDD+ +LSAIEE   VIAQA +A++    L++E+V+VRH  EF    P
Sbjct  593   ESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAP  652

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E VT MDVS +QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGME N
Sbjct  653   EDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERN  712

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VARDSGVCV+A+RGG+I+ VDASR+V+RVN++E+  GEAGVDIYNL KYTRSNQNTCINQ
Sbjct  713   VARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQ  772

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             + LV+ GDKV R D++ADGPSTD GELALGQNMR+AFM WNG+N+EDSI LSERV+QEDR
Sbjct  773   RPLVSKGDKVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDR  832

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV AGDILVGKV
Sbjct  833   FTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKV  892

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRVP+GTKGTVIDVQVFTRDG+E+D RALA
Sbjct  893   TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALA  952

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IEK QLD  RKDL EE++I E A  ER+   LNGQ  +GG   K+G  ++D+VL GLE  
Sbjct  953   IEKMQLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHG  1012

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
                 ++  ++ + E+L + Q ++ ++   +D+KF +KKRKL  GD+L  GVLK+VKVYLA
Sbjct  1013  QWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLA  1072

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             ++RRIQPGDKMAGRHGNKGVVS I+PVEDMPHDANG PVDVVLNPLGVPSRMNVGQILET
Sbjct  1073  IRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILET  1132

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLR  1196
             HLGLAAKGLGE+ID+ML++QR  AELR+FL ++YN++GG QE LD  TDEEIL LA NL+
Sbjct  1133  HLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK  1192

Query  1197  KGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNH  1256
             KGVP+ATPVFDGA+E +IK +L+LA+LP +GQ +LFDGRTG +F+RPVTVGYMYMLKLNH
Sbjct  1193  KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH  1252

Query  1257  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1316
             LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct  1253  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1312

Query  1317  VEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             V GRT++YKNIVDG+H M+PGMPESFNVL KEIRSLGI+I+L+
Sbjct  1313  VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE  1355


>Q88QP2 DNA-directed RNA polymerase subunit beta [Pseudomonas 
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 
/ KT2440)]
Length=1357

 Score = 1990 bits (5155),  Expect = 0.0
 Identities = 1001/1363 (73%), Positives = 1167/1363 (86%), Gaps = 12/1363 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F KLP VMD PYLL+IQ+DSYR FLQ G S  +  D+GL AAF+SV
Sbjct  1     MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI SYSGNAALE+V Y LG+P FDV+EC+LRG T+A P+RVK+RLII D+E+  K+IKD
Sbjct  61    FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD+GKTHSSGK+LYSARI
Sbjct  121   IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD V+VRIDRRRKL ASV+LRALGY+  ++L+ FY     ++    
Sbjct  181   IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++LVP+RLRGE+A  DI D  GKVIVEQG+RI ARH+ Q+E +G+ +L VP EY+  R
Sbjct  241   LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR  300

Query  299   ITAEDITL-RDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              TA+ I     G+++A  NT ++ E+++K+A+  V +   LYTNDID G F++DTL+ DT
Sbjct  301   TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  + +ALVEIY++MRPGEPPTK+AAE LFNNLFFS+ERYDLS VGRMKFNRR+GR    
Sbjct  361   TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE  420

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        G+LS EDI++VL+TLV+IRNGKG VDDIDHLGNRRVR VGEM ENQFRVG
Sbjct  421   GS--------GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVG  472

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS AE++ L PQDLINAKPVAAA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  473   LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHK  532

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ YA+ N +GFL
Sbjct  533   RRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFL  592

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             E+PYR V +G VSDD+ +LSAIEE   VIAQA +A++    L++E+V+VRH  EF    P
Sbjct  593   ESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAP  652

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E VT MDVS +QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGME N
Sbjct  653   EDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERN  712

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VARDSGVCV+A+RGG+I+ VDASR+V+RV ++E+  GEAGVDIYNL KYTRSNQNTCINQ
Sbjct  713   VARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQ  772

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             + LV+ GDKV RGD++ADGPSTD GELALGQNMR+AFM WNG+N+EDSI LSERV+QEDR
Sbjct  773   RPLVSKGDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDR  832

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV AGDILVGKV
Sbjct  833   FTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKV  892

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRVP+GTKGTVIDVQVFTRDG+E+D RALA
Sbjct  893   TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALA  952

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IEK QLD  RKDL EE++I E A  ER+   LNGQ  +GG   K+G  ++D+VL GLE  
Sbjct  953   IEKMQLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHG  1012

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
                 ++  ++ + E+L + Q ++ ++   +D+KF +KKRKL  GD+L  GVLK+VKVYLA
Sbjct  1013  QWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLA  1072

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             ++RRIQPGDKMAGRHGNKGVVS I+PVEDMPHDANG PVDVVLNPLGVPSRMNVGQILET
Sbjct  1073  IRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILET  1132

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLR  1196
             HLGLAAKGLGE+ID+ML++QR  AELR+FL ++YN++GG QE LD  TDEEIL LA NL+
Sbjct  1133  HLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK  1192

Query  1197  KGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNH  1256
             KGVP+ATPVFDGA+E +IK +L+LA+LP +GQ +LFDGRTG +F+RPVTVGYMYMLKLNH
Sbjct  1193  KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH  1252

Query  1257  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1316
             LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct  1253  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1312

Query  1317  VEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             V GRT++YKNIVDG+H M+PGMPESFNVL KEIRSLGI+I+L+
Sbjct  1313  VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE  1355


>A5VXP0 DNA-directed RNA polymerase subunit beta [Pseudomonas 
putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=1357

 Score = 1990 bits (5155),  Expect = 0.0
 Identities = 1001/1363 (73%), Positives = 1167/1363 (86%), Gaps = 12/1363 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F KLP VMD PYLL+IQ+DSYR FLQ G S  +  D+GL AAF+SV
Sbjct  1     MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDHFRDVGLHAAFKSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI SYSGNAALE+V Y LG+P FDV+EC+LRG T+A P+RVK+RLII D+E+  K+IKD
Sbjct  61    FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD+GKTHSSGK+LYSARI
Sbjct  121   IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD V+VRIDRRRKL ASV+LRALGY+  ++L+ FY     ++    
Sbjct  181   IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++LVP+RLRGE+A  DI D  GKVIVEQG+RI ARH+ Q+E +G+ +L VP EY+  R
Sbjct  241   LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR  300

Query  299   ITAEDITL-RDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              TA+ I     G+++A  NT ++ E+++K+A+  V +   LYTNDID G F++DTL+ DT
Sbjct  301   TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  + +ALVEIY++MRPGEPPTK+AAE LFNNLFFS+ERYDLS VGRMKFNRR+GR    
Sbjct  361   TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE  420

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        G+LS EDI++VL+TLV+IRNGKG VDDIDHLGNRRVR VGEM ENQFRVG
Sbjct  421   GS--------GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVG  472

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS AE++ L PQDLINAKPVAAA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  473   LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHK  532

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ YA+ N +GFL
Sbjct  533   RRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFL  592

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             E+PYR V +G VSDD+ +LSAIEE   VIAQA +A++    L++E+V+VRH  EF    P
Sbjct  593   ESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAP  652

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E VT MDVS +QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGME N
Sbjct  653   EDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERN  712

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VARDSGVCV+A+RGG+I+ VDASR+V+RV ++E+  GEAGVDIYNL KYTRSNQNTCINQ
Sbjct  713   VARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQ  772

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             + LV+ GDKV RGD++ADGPSTD GELALGQNMR+AFM WNG+N+EDSI LSERV+QEDR
Sbjct  773   RPLVSKGDKVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDR  832

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV AGDILVGKV
Sbjct  833   FTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKV  892

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRVP+GTKGTVIDVQVFTRDG+E+D RALA
Sbjct  893   TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALA  952

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IEK QLD  RKDL EE++I E A  ER+   LNGQ  +GG   K+G  ++D+VL GLE  
Sbjct  953   IEKMQLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHG  1012

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
                 ++  ++ + E+L + Q ++ ++   +D+KF +KKRKL  GD+L  GVLK+VKVYLA
Sbjct  1013  QWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLA  1072

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             ++RRIQPGDKMAGRHGNKGVVS I+PVEDMPHDANG PVDVVLNPLGVPSRMNVGQILET
Sbjct  1073  IRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILET  1132

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLR  1196
             HLGLAAKGLGE+ID+ML++QR  AELR+FL ++YN++GG QE LD  TDEEIL LA NL+
Sbjct  1133  HLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK  1192

Query  1197  KGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNH  1256
             KGVP+ATPVFDGA+E +IK +L+LA+LP +GQ +LFDGRTG +F+RPVTVGYMYMLKLNH
Sbjct  1193  KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH  1252

Query  1257  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1316
             LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct  1253  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1312

Query  1317  VEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             V GRT++YKNIVDG+H M+PGMPESFNVL KEIRSLGI+I+L+
Sbjct  1313  VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE  1355


>B1JDX1 DNA-directed RNA polymerase subunit beta [Pseudomonas 
putida (strain W619)]
Length=1357

 Score = 1988 bits (5149),  Expect = 0.0
 Identities = 1003/1363 (74%), Positives = 1165/1363 (85%), Gaps = 12/1363 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F KLP VMD PYLL+IQ+DSYR FLQ G S     D+GL AAF+SV
Sbjct  1     MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI SYSGNAALE+V Y LG+P FDV+EC+LRG T+A P+RVK+RLII D+E+  K+IKD
Sbjct  61    FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHD+GKTHSSGK+LYSARI
Sbjct  121   IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD V+VRIDRRRKL ASV+LRALGY+  ++L+ FY     ++    
Sbjct  181   IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++LVP+RLRGE+A  DI D  GKVIVEQG+RI ARHV Q+E +G+ +L VP EY+  R
Sbjct  241   LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHVNQLEKAGVNQLDVPMEYVLGR  300

Query  299   ITAEDITL-RDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              TA+ I     G++IA  NT L+ E+++K+A+  V +   LYTNDID G F++DTL+ DT
Sbjct  301   TTAKAIVHPATGEIIAECNTELTTELLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDT  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  + +ALVEIY++MRPGEPPTK+AAE LFNNLFFS+ERYDLS VGRMKFNRR+GR    
Sbjct  361   TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE  420

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        G+LS EDI++VL+TLV+IRNGKG VDDIDHLGNRRVR VGEM ENQFRVG
Sbjct  421   GS--------GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVG  472

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS AE++ L PQDLINAKPVAAA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  473   LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHK  532

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ YA+ N +GFL
Sbjct  533   RRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFL  592

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             E+PYR V +G VSDD+ +LSAIEE   VIAQA +A++    L++E+V+VRH  EF    P
Sbjct  593   ESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAP  652

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E VT MDVS +QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGME N
Sbjct  653   EDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERN  712

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VARDSGVCV+A+RGG+I+ VDASR+V+RV ++E+  GEAGVDIYNL KYTRSNQNTCINQ
Sbjct  713   VARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQ  772

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             + LV+ GDKV RGD++ADGPSTD GELALGQNMR+AFM WNG+N+EDSI LSERV+QEDR
Sbjct  773   RPLVSKGDKVARGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDR  832

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV AGDILVGKV
Sbjct  833   FTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKV  892

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRVP+GTKGTVIDVQVFTRDG+E+D RALA
Sbjct  893   TPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALA  952

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IEK QLD  RKDL EE++I E A  ER+   LNGQ  +GG   K+G  ++D+VL GLE  
Sbjct  953   IEKMQLDEIRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHG  1012

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
                 ++  ++ + E+L + Q ++ ++   +D+KF +KKRKL  GD+L  GVLK+VKVYLA
Sbjct  1013  QWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLA  1072

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             ++RRIQPGDKMAGRHGNKGVVS I+PVEDMPHDANG PVDVVLNPLGVPSRMNVGQILET
Sbjct  1073  IRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILET  1132

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLR  1196
             HLGLAAKGLGE+ID+M+++QR  AELR FL +IYN++GG QE L+  TDEEIL LA NL+
Sbjct  1133  HLGLAAKGLGEKIDRMIEEQRKAAELRGFLTEIYNEIGGRQENLEEFTDEEILALAHNLK  1192

Query  1197  KGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNH  1256
             KGVP+ATPVFDGA+E +IK +L+LA+LP +GQ +LFDGRTG +F+RPVTVGYMYMLKLNH
Sbjct  1193  KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNH  1252

Query  1257  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1316
             LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct  1253  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1312

Query  1317  VEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             V GRT++YKNIVDG+H M+PGMPESFNVL KEIRSLGI+I+L+
Sbjct  1313  VNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE  1355


>P19175 DNA-directed RNA polymerase subunit beta [Pseudomonas 
putida]
Length=1357

 Score = 1937 bits (5017),  Expect = 0.0
 Identities = 977/1363 (72%), Positives = 1149/1363 (84%), Gaps = 12/1363 (1%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             MAYSYTEKKRIRK+F KLP VMD PYLL+IQ+DSYR FLQ G    +     L AAF+SV
Sbjct  1     MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGSIQGSLPRRRLHAAFKSV  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI SYSGNAALE+V Y LG+P FDV+EC+LRG T+A P+RVK+RLII D+E+  K+IKD
Sbjct  61    FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMTENGTFVINGTERVIVSQ+HRSPGVFFDHD+GKTHSSGK+LYSARI
Sbjct  121   IKEQEVYMGEIPLMTENGTFVINGTERVIVSQMHRSPGVFFDHDRGKTHSSGKLLYSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD V+VRIDRRRKL ASV+LRALGY+  ++L+ FY     ++    
Sbjct  181   IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++LVP+RL GE+A  DI D  GKVIVEQG+RI ARH+ Q+E +G+ +L VP EY+  R
Sbjct  241   LSLELVPQRLAGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR  300

Query  299   ITAEDITL-RDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              TA+ I     G+++A  NT ++ E+++K+A+  V +   LYTNDID G F++DTL+ DT
Sbjct  301   TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  + +ALVEIY++MRPGEPPTK+AAE LFNNLFFS+ERYDLSP+GRMKFNRR+GR    
Sbjct  361   TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSPLGRMKFNRRIGRTEIE  420

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        G+LS EDI++VL+TLV+IRNGKG VDDIDHLGNRRVR VGEM ENQFRVG
Sbjct  421   GS--------GVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVG  472

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS AE++ L PQDLINAKPVAAA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  473   LVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHK  532

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RR SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+ YA+ N +GFL
Sbjct  533   RRCSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFL  592

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             E+PYR V +G VSDD+ +LSAIEE   VIAQA +A++    L++E+V+VRH  EF    P
Sbjct  593   ESPYRVVKEGVVSDDIVFLSAIEEADHVIAQASAAMNDKKQLIDELVAVRHLNEFTVKAP  652

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E VT MDVS +QVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ADKPLVGTGME N
Sbjct  653   EDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERN  712

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VARDSGVCV+ +RGG+I+ VDASR+V+RV ++E+  GE  VDIYNL KYTRSNQNTCINQ
Sbjct  713   VARDSGVCVVRRRGGVIDSVDASRIVVRVADDEVETGERRVDIYNLTKYTRSNQNTCINQ  772

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             + LV+ GDKV RGD++AD  STD GELALGQNMR+AFM WNG+N+EDSI LSERV+QEDR
Sbjct  773   RPLVSKGDKVQRGDIMADRASTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDR  832

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CVARD KLG  EIT+ IPNVGEAAL+KLDE+GIVY+GAEV AGDILVGKV
Sbjct  833   FTTIHIQELTCVARDNKLGPREITSGIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKV  892

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKG TQLTPEEKLLRAIFGEKA+DVKD+SLRVP+GT+GTVIDVQVFTRDG+E+D RALA
Sbjct  893   TPKGHTQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTQGTVIDVQVFTRDGVERDSRALA  952

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IEK QLD   +DL EE++I E A  ER+   LNGQ  +GG   K+G  ++D+VL GL+  
Sbjct  953   IEKMQLDEIPQDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLDDG  1012

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
                 ++  ++ + E+L + Q ++ ++   +D+KF +KKR +  GD+L  GVLK+VKVYLA
Sbjct  1013  QWFKLRMAEDALNEQLEKAQQYIVDRRRLLDDKFEDKKRNVQQGDDLAPGVLKIVKVYLA  1072

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             ++RRIQPGDKMAGRHGNKGVVS I+PVEDMPHDANG PVDVVLNPLGVPSRMNVGQILET
Sbjct  1073  IRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILET  1132

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGNLR  1196
             HLGLAAKGLGE+ID+ML++QR  AELR+FL ++YN++GG QE LD  TDEEIL LA NL+
Sbjct  1133  HLGLAAKGLGEKIDRMLEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALANNLK  1192

Query  1197  KGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKLNH  1256
             KGVP+ATPVFDGA+E +IK +L+LA+LP +GQ +LFDGRT  +F+RPVTVGYMYMLKLNH
Sbjct  1193  KGVPMATPVFDGAKEREIKAMLKLADLPESGQMVLFDGRTRNKFERPVTVGYMYMLKLNH  1252

Query  1257  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1316
             LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct  1253  LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD  1312

Query  1317  VEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELK  1359
             V GRT++YKNIVDG+H M+PGM ESFNVL KEIRSLGI+I+L+
Sbjct  1313  VNGRTKMYKNIVDGDHRMEPGMAESFNVLIKEIRSLGIDIDLE  1355


>P0A8V2 DNA-directed RNA polymerase subunit beta [Escherichia 
coli (strain K12)]
Length=1342

 Score = 1875 bits (4857),  Expect = 0.0
 Identities = 961/1366 (70%), Positives = 1132/1366 (83%), Gaps = 31/1366 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M YSYTEKKRIRK+FGK P V+D PYLLSIQ+DS++ F++  + P+ +   GL+AAFRSV
Sbjct  1     MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE--QDPEGQ--YGLEAAFRSV  56

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK--SIKD  118
             FPI+SYSGN+ L++V Y LG+P FDV+EC +RG TY+AP+RVK+RL+I +RE    ++KD
Sbjct  57    FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD  116

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGKVLY+ARI
Sbjct  117   IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI  176

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD ++VRIDRRRKL A++ILRAL Y   QILDLF+EKV   +    
Sbjct  177   IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK  236

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
              Q++LVPERLRGE A FDI  N GKV VE+G+RI ARH+RQ+E   +  + VP EY+  +
Sbjct  237   LQMELVPERLRGETASFDIEAN-GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK  295

Query  299   ITAED-ITLRDGDVI-AANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
             + A+D I    G++I AAN  LS +++ KL++ G K+   L+TND+DHG ++++TLR D 
Sbjct  296   VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP  355

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  R  ALVEIY++MRPGEPPT+EAAE+LF NLFFS +RYDLS VGRMKFNR L R    
Sbjct  356   TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR----  411

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
                 +  E  GILS +DIIDV++ L++IRNGKGEVDDIDHLGNRR+RSVGEM ENQFRVG
Sbjct  412   ----EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG  467

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS  + D L PQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  468   LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK  527

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLSVYA+ N++GFL
Sbjct  528   RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL  587

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             ETPYRKV DG V+D++ YLSAIEE   VIAQA+S +D +GH +E++V+ R +GE      
Sbjct  588   ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR  647

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             ++V +MDVS QQVVSV ASLIPFLEHDDANRALMG+NMQRQAVPTL ADKPLVGTGME  
Sbjct  648   DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA  707

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VA DSGV  +AKRGG++++VDASR+VI+VNE+EM  GEAG+DIYNL KYTRSNQNTCINQ
Sbjct  708   VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ  767

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
                V+LG+ V RGDVLADGPSTD GELALGQNMRVAFM WNGYN+EDSIL+SERV+QEDR
Sbjct  768   MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR  827

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CV+RDTKLG EEITADIPNVGEAALSKLDESGIVYIGAEVT GDILVGKV
Sbjct  828   FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV  887

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKDSSLRVP+G  GTVIDVQVFTRDG+EKD RAL 
Sbjct  888   TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE  947

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IE+ QL   +KDL EE +I E     RI  +L      GG   ++ DKL  D        
Sbjct  948   IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA----GGVEAEKLDKLPRD--------  995

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
               L++  TDE    +L Q+     E   E ++K   K+RK+  GD+L  GVLK+VKVYLA
Sbjct  996   RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA  1055

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             VKRRIQPGDKMAGRHGNKGV+S I P+EDMP+D NG PVD+VLNPLGVPSRMN+GQILET
Sbjct  1056  VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET  1115

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELD--TLTDEEILVLAGN  1194
             HLG+AAKG+G++I+ ML+QQ+ +A+LR F+ + Y+     ++++D  T +DEE++ LA N
Sbjct  1116  HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN  1175

Query  1195  LRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKL  1254
             LRKG+P+ATPVFDGA+E +IKELL+L +LP +GQ  L+DGRTGEQF+RPVTVGYMYMLKL
Sbjct  1176  LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL  1235

Query  1255  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1314
             NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
Sbjct  1236  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1295

Query  1315  DDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             DDV GRT++YKNIVDGNH M+PGMPESFNVL KEIRSLGINIEL++
Sbjct  1296  DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED  1341


>P06173 DNA-directed RNA polymerase subunit beta [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=1342

 Score = 1872 bits (4849),  Expect = 0.0
 Identities = 957/1366 (70%), Positives = 1132/1366 (83%), Gaps = 31/1366 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M YSYTEKKRIRK+FGK P V+D PYLLSIQ+DS++ F++  + P+ +   GL+AAFRSV
Sbjct  1     MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE--QDPEGQ--YGLEAAFRSV  56

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK--SIKD  118
             FPI+SYSGN+ L++V Y LG+P FDV+EC +RG TY+AP+RVK+RL+I +RE    ++KD
Sbjct  57    FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD  116

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGKVLY+ARI
Sbjct  117   IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI  176

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD ++VRIDRRRKL A++ILRAL Y   QILDLF+EKV   +    
Sbjct  177   IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNK  236

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
              Q++L+PERLRGE A FDI  N GKV VE+G+RI ARH+RQ+E   +  + VP EY+  +
Sbjct  237   LQMELIPERLRGETASFDIEAN-GKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGK  295

Query  299   ITAED-ITLRDGDVI-AANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
             + ++D +    G++I AAN  LS +++ KL++ G K+   L+TND+DHG ++++T+R D 
Sbjct  296   VVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDP  355

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T  R  ALVEIY++MRPGEPPT+EAAE+LF NLFFS +RYDLS VGRMKFNR L R    
Sbjct  356   TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIE  415

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G+        GILS +DIIDV++ L++IRNGKGEVDDIDHLGNRR+RSVGEM ENQFRVG
Sbjct  416   GS--------GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG  467

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAVKERLS  + D L PQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHK
Sbjct  468   LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK  527

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLSVYA+ N++GFL
Sbjct  528   RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL  587

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             ETPYR+VVDG V+D++ YLSAIEE   VIAQA+S +D +GH +E++V+ R +GE      
Sbjct  588   ETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSR  647

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             ++V +MDVS QQVVSV ASLIPFLEHDDANRALMG+NMQRQAVPTL ADKPLVGTGME  
Sbjct  648   DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA  707

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VA DSGV  +AKRGG +++VDASR+VI+VNE+EM  GEAG+DIYNL KYTRSNQNTCINQ
Sbjct  708   VAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ  767

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
                V+LG+ V RGDVLADGPSTD GELALGQNMRVAFM WNGYN+EDSIL+SERV+QEDR
Sbjct  768   MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR  827

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQEL+CV+RDTKLG EEITADIPNVGEAALSKLDESGIVYIGAEVT GDILVGKV
Sbjct  828   FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV  887

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKDSSLRVP+G  GTVIDVQVFTRDG+EKD RAL 
Sbjct  888   TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE  947

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IE+ QL   +KDL EE +I E     RI  +L     + G   ++ DKL  D        
Sbjct  948   IEEMQLKQAKKDLSEELQILEAGLFSRIRAVL----VSSGVEAEKLDKLPRD--------  995

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
               L++  TDE    +L Q+     E   E ++K   K+RK+  GD+L  GVLK+VKVYLA
Sbjct  996   RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA  1055

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             VKRRIQPGDKMAGRHGNKGV+S I P+EDMP+D NG PVD+VLNPLGVPSRMN+GQILET
Sbjct  1056  VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET  1115

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELD--TLTDEEILVLAGN  1194
             HLG+AAKG+G++I+ ML+QQ+ +A+LR F+ + Y+     ++++D  T +D+E+L LA N
Sbjct  1116  HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAEN  1175

Query  1195  LRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKL  1254
             LRKG+P+ATPVFDGA+E +IKELL+L +LP +GQ  LFDGRTGEQF+RPVTVGYMYMLKL
Sbjct  1176  LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKL  1235

Query  1255  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1314
             NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
Sbjct  1236  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1295

Query  1315  DDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             DDV GRT++YKNIVDGNH M+PGMPESFNVL KEIRSLGINIEL++
Sbjct  1296  DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED  1341


>O86094 DNA-directed RNA polymerase subunit beta [Legionella pneumophila]
Length=1368

 Score = 1842 bits (4772),  Expect = 0.0
 Identities = 933/1366 (68%), Positives = 1118/1366 (82%), Gaps = 16/1366 (1%)

Query  3     YSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSVFP  62
             YS+ EKKR RK+FGK   +M  P LL IQ+ SYR FLQ       + + GL AAF SVFP
Sbjct  10    YSHAEKKRFRKSFGKQTDIMPIPNLLEIQLKSYRDFLQTDTKLSEQLNTGLHAAFSSVFP  69

Query  63    IESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET----KSIKD  118
             IES+SGNA LE+V Y LG+P FDVREC LRG TY+AP+RVKIRL++ D++     K IKD
Sbjct  70    IESFSGNARLEYVGYKLGEPAFDVRECKLRGLTYSAPLRVKIRLVVLDKDASDDPKPIKD  129

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             +REQ+V+MGEIPLMT+ GTFV+NGTERV+VSQLHRSPGV F+HDKGKTHSSGK+LYSARI
Sbjct  130   IREQDVFMGEIPLMTDVGTFVVNGTERVVVSQLHRSPGVIFEHDKGKTHSSGKLLYSARI  189

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD VYVRIDRRRKL  +++LRALGY    IL  F+E    +L  G 
Sbjct  190   IPYRGSWLDFEFDPKDCVYVRIDRRRKLPVTILLRALGYEAEDILSEFFETTRCHLKNGE  249

Query  239   YQIDLVPERLRGEMAQFDI-ADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYE  297
             Y IDL+P+RLRGE+A FDI     G++IVEQG+RI ARH++QME S +  L VP +YL  
Sbjct  250   YHIDLIPQRLRGEIASFDIHVPETGELIVEQGRRITARHIKQMEKSQMQDLVVPRDYLIG  309

Query  298   RITAEDIT-LRDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRAD  355
             +  A++I     G+ +A AN  ++ E++  +A  G+ Q +++YTND+DHGS+++DTL+ D
Sbjct  310   KTLAKNIIDTSTGEFLAQANDEITEELLDAMANHGILQIDMIYTNDLDHGSYISDTLKID  369

Query  356   TTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYE  415
              T  + +ALVEIY++MRPGEPPTKEAAE LF NLFF  ERYDLS VGRMKFNRR+G    
Sbjct  370   PTGSQLEALVEIYRMMRPGEPPTKEAAEALFKNLFFVEERYDLSAVGRMKFNRRVGI---  426

Query  416   VGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRV  475
                  KS E  G L+ EDI+ V++TL++IRNG G VDDIDHLGNRRVRSVGEMTENQFRV
Sbjct  427   -----KSDEGPGTLTKEDILSVIKTLIDIRNGIGMVDDIDHLGNRRVRSVGEMTENQFRV  481

Query  476   GLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITH  535
             GLVRVERAVKERLS  E++NL PQDLINAKPV+AAIKEFFGSSQLSQFMDQ NPLS +TH
Sbjct  482   GLVRVERAVKERLSLVESENLMPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSGVTH  541

Query  536   KRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGF  595
             KRRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLSVYA+ N++GF
Sbjct  542   KRRVSALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGF  601

Query  596   LETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMP  655
             +ETP RKVV+GRV+D+VEYLSAIEEV   IAQ++  +DA G+++ ++V  RHQ EF    
Sbjct  602   IETPCRKVVNGRVTDEVEYLSAIEEVDQYIAQSNVELDAQGNILADLVPCRHQNEFSLTT  661

Query  656   PEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEA  715
             P+K+ +MDVS +Q+VSVAASLIPFLEHDDANRALMGSNMQRQAVPTL ++KPLVGTGME 
Sbjct  662   PDKINYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMER  721

Query  716   NVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCIN  775
              VA DSGV V+AKRGG+I+ VDASR+V+RVN++E  AGE GVDIYNL KY RSNQ+TCIN
Sbjct  722   IVASDSGVSVVAKRGGVIDLVDASRIVVRVNDDETTAGETGVDIYNLTKYFRSNQDTCIN  781

Query  776   QKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQED  835
             Q+ +V+ GD++ RGDVLADGP TD GELALGQN+ VAFM WNGYN+EDSIL+SER++ +D
Sbjct  782   QRPIVSTGDRIQRGDVLADGPCTDMGELALGQNLLVAFMPWNGYNFEDSILISERIVHDD  841

Query  836   RLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGK  895
             R T+IHI+EL+C+ARDTKLG EEITADIPNVGE+ALS LDESG+VYIGAEV AGDILVGK
Sbjct  842   RFTTIHIEELTCIARDTKLGTEEITADIPNVGESALSNLDESGVVYIGAEVKAGDILVGK  901

Query  896   VTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRAL  955
             VTPKGETQLTPEEKLLRAIFGEKA+DVKDSSLRVPSG  GTVIDVQVFTRDGLEKD RA 
Sbjct  902   VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMNGTVIDVQVFTRDGLEKDARAK  961

Query  956   AIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGG-GTTKRGDKLSDDVLSGLE  1014
             +IE+  L   RKDL +E +I EE    R+  LL  + + GG G+ K G K++ D L  +E
Sbjct  962   SIEEEHLARVRKDLIDERRIREEDIYHRVSHLLLDKVATGGPGSLKPGSKITQDYLDKVE  1021

Query  1015  LVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVY  1074
                  DI+  D+ ++++L Q+   L+  + E++++F + ++K+  GD+L  GVLK+VKVY
Sbjct  1022  REKWFDIRIEDDAVSQQLEQLSKQLELLTKEMEKRFNDSRKKIIQGDDLAPGVLKIVKVY  1081

Query  1075  LAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQIL  1134
             LAVKRRIQPGDKMAGRHGNKGV+S ++PVEDMPH  +G  VD+VLNPLGVPSRMN+GQ+L
Sbjct  1082  LAVKRRIQPGDKMAGRHGNKGVISIVVPVEDMPHMEDGTAVDIVLNPLGVPSRMNIGQVL  1141

Query  1135  ETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLAGN  1194
             ETHLGLAAKGLG +I +ML +++T   ++ +L+KIYN  G ++  L  L D+E++ LA N
Sbjct  1142  ETHLGLAAKGLGRKIAQMLDERQTPEAIKAYLEKIYNHDGVQRVNLKCLNDDELMTLADN  1201

Query  1195  LRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKL  1254
             LR GVP+ATPVFDGA E +IK +L+LA+LP  G+ +L DGRTG +FD PVTVGYMYMLKL
Sbjct  1202  LRAGVPMATPVFDGATEQEIKSMLQLADLPADGKTVLIDGRTGNKFDNPVTVGYMYMLKL  1261

Query  1255  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1314
             NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
Sbjct  1262  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1321

Query  1315  DDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             DDV GRT+IYKNIVDG+H MDPGMPESFNVL KEIR+LGI+IEL++
Sbjct  1322  DDVGGRTKIYKNIVDGDHRMDPGMPESFNVLLKEIRALGIDIELEH  1367


>Q5E238 DNA-directed RNA polymerase subunit beta [Aliivibrio fischeri 
(strain ATCC 700601 / ES114)]
Length=1342

 Score = 1831 bits (4744),  Expect = 0.0
 Identities = 929/1366 (68%), Positives = 1113/1366 (81%), Gaps = 32/1366 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M YSYTEKKRIRK+FGK P V+D PYLLSIQ+DS+  F++  + P+ +   GL+AAFRSV
Sbjct  1     MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFTKFIE--QDPEGQ--YGLEAAFRSV  56

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLII--KDRETKSIKD  118
             FPI+SY+GN+ LE+V Y L +PEFDV+EC +RG TY+AP+RVK+RL++  KD    ++KD
Sbjct  57    FPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRVKLRLVVYDKDAPANTVKD  116

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGKVLY+AR+
Sbjct  117   IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARV  176

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD ++VRIDRRRKL A++ILRAL     +ILDLF++KV   +   +
Sbjct  177   IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNKTTEEILDLFFDKVVFEVKDQT  236

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
               ++L+PERLRGE A FDI  N GKV VE G+RI ARH+RQ+    +T + VP +Y+  +
Sbjct  237   LMMELIPERLRGETATFDIEAN-GKVYVEAGRRITARHIRQLTKDDITHIEVPVDYIVGK  295

Query  299   ITAEDITLRDGD--VIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
             + + D    D    +IAAN   S E +  L++ G K+  +L+TND+DHG++++DTLRAD+
Sbjct  296   VASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGYKKIEVLFTNDLDHGAYISDTLRADS  355

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T+ R  ALVEIY++MRPGEPPTKEAAE LF +LFFS ERYDLS VGRMKFN  +GR  + 
Sbjct  356   TVDRLSALVEIYRMMRPGEPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGRDNDE  415

Query  417   GTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFRVG  476
             G         G+L   DII+V+R L++IRNG GEVDDIDHLGNRR+RSVGEM ENQFRVG
Sbjct  416   GA--------GVLDETDIIEVMRKLIDIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVG  467

Query  477   LVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHK  536
             LVRVERAV+ERLS  + D + PQDLINAKP++AA+KEFFGSSQLSQFMDQNNPLSE+THK
Sbjct  468   LVRVERAVRERLSLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHK  527

Query  537   RRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFGFL  596
             RR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSLS +A+ N++GFL
Sbjct  528   RRISALGPGGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFAQCNEYGFL  587

Query  597   ETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRMPP  656
             ETPYR+VVDG+V+D V+YLSAIEE   VIAQA++ +  +G   +E++  R +GE    P 
Sbjct  588   ETPYRRVVDGQVTDQVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIARQKGESGLHPR  647

Query  657   EKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGMEAN  716
             E + +MDV+  QVVSVAASLIPFLEHDDANRALMG+NMQRQAVPTL ADKPLVGTG+E N
Sbjct  648   EHIQYMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERN  707

Query  717   VARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCINQ  776
             VA DSGV  +AKRGG+++ VDASR+VI+VNE+E++ GEAG+DIYNL KYTRSNQNTCINQ
Sbjct  708   VAVDSGVTAVAKRGGVVQSVDASRIVIKVNEDELVPGEAGIDIYNLTKYTRSNQNTCINQ  767

Query  777   KVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQEDR  836
             +  V  G+ V RGDVLADGPSTD GELALGQNMR+AFM WNGYN+EDSIL+SERV+QEDR
Sbjct  768   RPTVLPGEPVTRGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDR  827

Query  837   LTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVGKV  896
              T+IHIQELSCVARDTKLG+EEITADIPNVGEAALSKLDESGIVYIGAEV  GDILVGKV
Sbjct  828   FTTIHIQELSCVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKV  887

Query  897   TPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRALA  956
             TPKGETQLTPEEKLLRAIFGEKA+DVKDSSLRVP+   GT+IDVQVFTRDG+EKD RAL 
Sbjct  888   TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALE  947

Query  957   IEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLELV  1016
             IE+ QL   +KD+ EE++I E     R+  LL                +S+  L  ++  
Sbjct  948   IEQMQLKEAKKDITEEFQILEGGLLARVRTLLVAA------------GVSEVKLDAMDRK  995

Query  1017  DLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVYLA  1076
               L+I   DE    +L Q+     E  AE D+KF  K+RK+  GD+L  GVLK+VKVYLA
Sbjct  996   QWLEITLDDEAQQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIVKVYLA  1055

Query  1077  VKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQILET  1136
             VKRRIQPGDKMAGRHGNKGV+S I PVEDMP+D  G PVD+VLNPLGVPSRMN+GQILE 
Sbjct  1056  VKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEV  1115

Query  1137  HLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELD--TLTDEEILVLAGN  1194
             H+GLAAKG+G++I++ML++Q+ + + R FL K+Y+ +G  ++E+D   L+D+E+  L  N
Sbjct  1116  HMGLAAKGVGDKINQMLKEQQELHKFRNFLQKVYD-LGETRQEVDIAALSDDEVRTLIKN  1174

Query  1195  LRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYMLKL  1254
             LR G+P+ATP+FDGA E  IKELL+L +LP +GQ  LFDGRTG+ F+RPVTVGYMYMLKL
Sbjct  1175  LRGGLPIATPIFDGAPEASIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKL  1234

Query  1255  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1314
             NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS
Sbjct  1235  NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS  1294

Query  1315  DDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             DDV GRT++YKNIVDG+H M+PGMPESFNVL KEIRSLGINIEL++
Sbjct  1295  DDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELED  1340


>P41184 DNA-directed RNA polymerase subunit beta [Buchnera aphidicola 
subsp. Schizaphis graminum (strain Sg)]
Length=1342

 Score = 1798 bits (4657),  Expect = 0.0
 Identities = 913/1368 (67%), Positives = 1107/1368 (81%), Gaps = 35/1368 (3%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M YSYTEKKRIRK+FGK P V+D PYLLSIQ+DS++ F++      +    GL+AAFRSV
Sbjct  1     MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFIKIDPEGLH----GLEAAFRSV  56

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRET--KSIKD  118
             FPI  Y+GN+ L++V Y LG   FDV+EC +RG+TY+AP+RV++RL+I +R+    ++KD
Sbjct  57    FPICGYNGNSELQYVSYRLGDAIFDVKECQIRGATYSAPLRVRLRLVIYERDVLEPTVKD  116

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             ++EQEVYMGEIPLMT NGTF+INGTERV+VSQLHRSPGVFFD DKGKTHSSGKVLY+ARI
Sbjct  117   IKEQEVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI  176

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KD ++VRIDRRRKL  ++ILRAL YN  +IL+LF+EK    ++   
Sbjct  177   IPYRGSWLDFEFDPKDNLFVRIDRRRKLPVTIILRALNYNTEEILNLFFEKNIFNINNNK  236

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLYER  298
              Q++LV ERLRGE A FDI  N GK+ V++G+RI A+H+++++   +  ++VP EY+  R
Sbjct  237   IQLELVSERLRGETASFDIKKN-GKIYVKKGRRITAKHIQELKKDKINSITVPVEYILGR  295

Query  299   ITAED-ITLRDGD-VIAANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
             I +++ +  + G+ +I ANT LS EI+ KL          L+TND+DHG ++++TLR D+
Sbjct  296   IVSKNYLDPKTGETIILANTELSLEILTKLKNSSFFSIETLFTNDLDHGPYISETLRIDS  355

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             +  R  AL+EIY+VMRPGEP TKEA ENLF NLFFS +RYDLS VGRMKFNR L R    
Sbjct  356   SHDRISALMEIYRVMRPGEPLTKEATENLFENLFFSEDRYDLSSVGRMKFNRSLLR----  411

Query  417   GTDQKSREVEGI--LSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFR  474
                   +++EG+  L+ EDIIDV++ L++IRNGKGEVDDIDHLGNRR+RSVGEM ENQFR
Sbjct  412   ------KKIEGVSTLNKEDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR  465

Query  475   VGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEIT  534
             +GLVRVERAVKERLS  + D L PQD+INAKP++AAIKEFFGSSQLSQFMDQNNPLSEIT
Sbjct  466   IGLVRVERAVKERLSVGDLDTLMPQDMINAKPISAAIKEFFGSSQLSQFMDQNNPLSEIT  525

Query  535   HKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFG  594
             HKRR+SALG GGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLSVYA+ N +G
Sbjct  526   HKRRISALGLGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNSYG  585

Query  595   FLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRM  654
             FLETPYRKV +  V+D++ YLSAIEE   VIAQA++ +D + + ++++V+ RH+GE    
Sbjct  586   FLETPYRKVHNRLVTDEIHYLSAIEEGNYVIAQANTNIDKNNYFIDDLVTCRHKGESSLF  645

Query  655   PPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGME  714
                +V +MDVS QQ+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTL  DKPLVGTGME
Sbjct  646   NCNQVDYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLVGTGME  705

Query  715   ANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQNTCI  774
               VA DSGV V+AKRGG+I+++DASR++I+VNEEE   GEAG+DIYNL KYTRSNQNTCI
Sbjct  706   RAVAVDSGVTVVAKRGGIIQYIDASRIIIKVNEEETYTGEAGIDIYNLTKYTRSNQNTCI  765

Query  775   NQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQE  834
             NQK  V L +K+ + DVLADGPSTD GELALGQNMRVAFM WNGYN+EDSIL+SE+V+QE
Sbjct  766   NQKPCVKLREKINKNDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSEKVVQE  825

Query  835   DRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILVG  894
             DR T+IHIQELSC++RDTKLG EEI++DIPNVGEAALSKLDESGIVYIGAEVT GDILVG
Sbjct  826   DRFTTIHIQELSCISRDTKLGPEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVG  885

Query  895   KVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDRA  954
             KVTPKGETQLTPEEKLLRAIFGEKA+DVKDSSLRVP+G  GTVIDVQ+FTRDG++KD RA
Sbjct  886   KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRA  945

Query  955   LAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGGTTKRGDKLSDDVLSGLE  1014
             L IE  QL   +KDL EE+KIFE +   RI +            T     + +D L+ L 
Sbjct  946   LEIENMQLKKAKKDLTEEFKIFELSLFSRIKK------------TLVSFNIKEDFLNKLP  993

Query  1015  LVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVKVY  1074
                   I   D    + + ++     +   E ++K   K+RK+  GD+L  GVLK+VKVY
Sbjct  994   YEKWFKIDIQDRNKKKEIEKLLQQHNQLKKEFEKKIEVKRRKITQGDDLAPGVLKIVKVY  1053

Query  1075  LAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQIL  1134
             LAVKR+IQPGDKMAGRHGNKGV+S I PVEDMP+D NG+PVD+VLNPLGVPSRMN+GQIL
Sbjct  1054  LAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVPSRMNIGQIL  1113

Query  1135  ETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGG--EQEELDTLTDEEILVLA  1192
             ETHLG+AAKG+G +I+ ML++Q  I+ L+ F+ K ++      ++  LD  ++EEIL LA
Sbjct  1114  ETHLGMAAKGIGNKINNMLKKQEKISNLKKFIQKAFDLGENLRQKVNLDDFSNEEILDLA  1173

Query  1193  GNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYML  1252
              NL+KG+P++TPVFDGA+E +IK++L+ + LP +GQ  LFDGRTGE+F+RPVTVGYMYML
Sbjct  1174  KNLKKGMPISTPVFDGAQENEIKQMLKFSNLPTSGQISLFDGRTGEKFERPVTVGYMYML  1233

Query  1253  KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV  1312
             KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+YTLQEMLTV
Sbjct  1234  KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTV  1293

Query  1313  KSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             KSDDV GRT++YKNIVDGNH M+PGMPESFNVL KEIRSLGINIEL+N
Sbjct  1294  KSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEN  1341


>B6J270 DNA-directed RNA polymerase subunit beta [Coxiella burnetii 
(strain CbuG_Q212)]
Length=1375

 Score = 1782 bits (4616),  Expect = 0.0
 Identities = 912/1368 (67%), Positives = 1104/1368 (81%), Gaps = 19/1368 (1%)

Query  4     SYTEKKRIRKNFGKLP-SVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSVFP  62
             SY EK+R R N GK    ++  PYLL  Q++SYR FLQ   + + RED GL AAF+SVFP
Sbjct  15    SYPEKRRARVNLGKREVEILKTPYLLETQIESYRKFLQKDIAAEKREDNGLHAAFKSVFP  74

Query  63    IESYSGNAALEFVEYGLGKPE--FDVRECILRGSTYAAPMRVKIRLIIKDRET----KSI  116
             I SYSG A LE+V Y LG     FDV EC LRG TYAAP++V +RL+I D+E     K+I
Sbjct  75    ITSYSGYAVLEYVGYSLGGESTLFDVEECKLRGLTYAAPLKVNMRLVIYDKEAPAGKKAI  134

Query  117   KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA  176
             KD++EQEVYMGEIPLMTE G+ VINGTERV+VSQLHRSPGVFF+HDKGKTHSSGK+LYSA
Sbjct  135   KDIKEQEVYMGEIPLMTETGSLVINGTERVVVSQLHRSPGVFFEHDKGKTHSSGKLLYSA  194

Query  177   RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDF  236
             R+IPYRGSWLDFEFD KD ++VRIDRRRKL A+VILRALGY+  QILD+FY+    +L+ 
Sbjct  195   RVIPYRGSWLDFEFDPKDCLFVRIDRRRKLPATVILRALGYDTEQILDMFYKTNHFHLNQ  254

Query  237   GSYQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSVPDEYLY  296
              +  +DL+P+RLRGE+A  +I D  GKVIVE  +RI+ARH+R +E + + KL +PD+YLY
Sbjct  255   ETVTLDLIPQRLRGELAVVEIKDKKGKVIVEANRRISARHIRLIEKAEINKLELPDDYLY  314

Query  297   ERITAEDITLRD-GDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRA  354
              ++  + I  ++ G++IA AN  ++ E++  L        + LY N+I+ G +V+DTLR 
Sbjct  315   GKVIGKTIIDKETGEIIAHANEEITAELLKNLRATKTASLDTLYINEIECGPYVSDTLRL  374

Query  355   DTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPY  414
             DTT  + +ALVEIY++MRPGEPPTKEAAE+LF NLFFS ERY LS VGRMKFNRR+GR  
Sbjct  375   DTTTNQLEALVEIYRIMRPGEPPTKEAAESLFENLFFSPERYSLSAVGRMKFNRRVGRKE  434

Query  415   EVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTENQFR  474
               G D        +LS EDI+DVLR LV+IR+GKG+VDDIDHLGNRR+RSVGEM ENQFR
Sbjct  435   LTGLD--------VLSKEDIVDVLRVLVDIRDGKGDVDDIDHLGNRRIRSVGEMAENQFR  486

Query  475   VGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEIT  534
             VGLVRVERAVK+RLS A+ +NL PQDL+NAKPV+AAIKEFFGSSQLSQFMDQNNPLSEIT
Sbjct  487   VGLVRVERAVKDRLSLADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEIT  546

Query  535   HKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKANDFG  594
             HKRRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL+V+A+AN++G
Sbjct  547   HKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEYG  606

Query  595   FLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGEFVRM  654
             FLETPYRKVVD  V+D+ EYLSAIEE    IAQA++ VD  G L+++++S R++GEF   
Sbjct  607   FLETPYRKVVDRVVTDETEYLSAIEEGDYYIAQANTNVDEKGRLVDDLISCRYKGEFTLT  666

Query  655   PPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVGTGME  714
              P+K+ +MDVS +Q+VSVAA+LIPFLEHDDANRALMGSNMQRQAVPT+  + PLVGTGME
Sbjct  667   TPDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRPETPLVGTGME  726

Query  715   ANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEM-IAGEAGVDIYNLIKYTRSNQNTC  773
               VA DSGV VIAKR G+I+ VDASR+V+RV+ +E     + GVDIYNL K+TRSNQNTC
Sbjct  727   RTVAVDSGVTVIAKRSGVIDSVDASRIVVRVDRKETEDDDDIGVDIYNLTKFTRSNQNTC  786

Query  774   INQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSERVLQ  833
             INQ  +V +GDKV +GDVLADGPSTD GELALGQN+ VAFM WNGYN+EDSIL+SER+++
Sbjct  787   INQHPIVEVGDKVQKGDVLADGPSTDIGELALGQNLLVAFMPWNGYNFEDSILISERLVE  846

Query  834   EDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGDILV  893
             EDR T+IHIQE +CVARDTKLG EEIT+DIPNVGE+AL+KLDESGIV+IGAEV AGDILV
Sbjct  847   EDRFTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALAKLDESGIVHIGAEVNAGDILV  906

Query  894   GKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEKDDR  953
             GKVTPKGETQLTPEEKLLRAIFGEKA+DVKD+SLRV  G  GTVIDV++FTR+G++KD+R
Sbjct  907   GKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVTPGITGTVIDVRIFTREGVKKDER  966

Query  954   ALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGG-GTTKRGDKLSDDVLSG  1012
              L IEKA+L    KDL +E ++ E+A  E + +LL G+ + GG     +G K++   L+ 
Sbjct  967   TLEIEKAELSKVEKDLNDELRVREDALFENLEKLLTGRVAAGGPNKLAKGTKITKSYLAD  1026

Query  1013  LELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLKVVK  1072
             L      +I+  D+   +RL       KE     D K  + ++KL  G +L  GV+K+VK
Sbjct  1027  LPRQKWFEIRLQDDAATKRLEASHEHFKELRETRDAKLKDSRQKLTQGGDLAPGVIKIVK  1086

Query  1073  VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMNVGQ  1132
             VYLAVKRRIQPGDKMAGRHGNKGV+S I+P+EDMP+  +G PVD+VLNPLGVPSRMN+GQ
Sbjct  1087  VYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDIVLNPLGVPSRMNIGQ  1146

Query  1133  ILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEELDTLTDEEILVLA  1192
             +LETHLG AAKGLG++I +M+++     ELR  L  IY+    ++ +L+ L D EI++LA
Sbjct  1147  VLETHLGWAAKGLGKKIGEMIEKGADAKELRKSLKPIYDLSKTQRFDLEALEDPEIVMLA  1206

Query  1193  GNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVGYMYML  1252
              NLRKGVP+++PVFDGA E +IK+LL++A+LP +GQ  L+DGRTG++FDR VTVGYMYML
Sbjct  1207  KNLRKGVPISSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYML  1266

Query  1253  KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV  1312
             KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV
Sbjct  1267  KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV  1326

Query  1313  KSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIELKN  1360
             KSDDV GRTR+YKNIVDG+H MD GMPESFNVL KEIRSL I+I L+N
Sbjct  1327  KSDDVAGRTRMYKNIVDGDHRMDAGMPESFNVLVKEIRSLAIDIGLEN  1374


>Q59622 DNA-directed RNA polymerase subunit beta [Neisseria meningitidis 
serogroup B (strain MC58)]
Length=1392

 Score = 1757 bits (4550),  Expect = 0.0
 Identities = 899/1391 (65%), Positives = 1113/1391 (80%), Gaps = 33/1391 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M YS+TEKKRIRK+F K  +V++ P+LL+ Q+DSY  FLQ   +   R D GLQAAF S+
Sbjct  1     MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI  60

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLIIKDRETK--SIKD  118
             FPI S++G A LEFV Y LG+P FD+ EC LRG TYAAP+R +IRL+I D+E    ++K+
Sbjct  61    FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE  120

Query  119   VREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSARI  178
             VRE EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+HDKGKTHSSGK+L+SARI
Sbjct  121   VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI  180

Query  179   IPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDFGS  238
             IPYRGSWLDFEFD KDL+Y RIDRRRK+  +++L+ALGYNN QILD+FY+K   YL    
Sbjct  181   IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG  240

Query  239   YQIDLVPERLRGEMAQFDIADNDGKVIVEQGKRINARHVRQMEASGLTKLSV-PDEYLYE  297
              Q DLV +RL+GE A+ DI D +G V+V +GKRI A+++R +  +GLT+L V P+  L +
Sbjct  241   VQTDLVADRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEPESLLGK  300

Query  298   RITAEDITLRDGDVIA-ANTLLSHEIMVKLAEGGVKQFNILYTNDIDHGSFVADTLRADT  356
              + A+ I    G+V+A AN  ++ E++ K    GVK+   LY N++D G+++++TLR D 
Sbjct  301   ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE  360

Query  357   TMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRLGRPYEV  416
             T GR+ A V IY++MRPGEPPT+EA E LFN LFFS + YDLS VGRMKFN R       
Sbjct  361   TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS  420

Query  417   GTDQKS-------------REVEG-ILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRV  462
                Q S              +  G +LS EDI+  + TLVE+RNG GEVDDIDHLGNRRV
Sbjct  421   EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV  480

Query  463   RSVGEMTENQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQ  522
             RSVGE+TENQFR GL RVERAVKERL+QAE++NL P DLINAKPV+AAIKEFFGSSQLSQ
Sbjct  481   RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ  540

Query  523   FMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLIN  582
             FMDQ NPLSE+THKRRVSALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLIN
Sbjct  541   FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN  600

Query  583   SLSVYAKANDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEM  642
             SLSVYA+ ND+GFLETPYR+V+DG+V+++++YLSAIEE   VIAQA++ +D+DG+L+ ++
Sbjct  601   SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL  660

Query  643   VSVRHQGEFVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTL  702
             V+ R +GE +   P++V +MDV+  QVVSVAASLIPFLEHDDANRALMG+NMQRQAVP L
Sbjct  661   VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL  720

Query  703   LADKPLVGTGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNL  762
               +KP+VGTG+E +VA DS   ++A+RGG++E+VDA+RVVIRV+++E  AGE GVDIYNL
Sbjct  721   RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL  780

Query  763   IKYTRSNQNTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYE  822
             +K+TRSNQ+T INQ+  V  GD + RGD++ADG STD GELALGQNM +AFM WNGYNYE
Sbjct  781   VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDFGELALGQNMTIAFMPWNGYNYE  840

Query  823   DSILLSERVLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYI  882
             DSIL+SE+V  +DR TSIHI+EL+ VARDTKLGAE+IT DIPN+ E   ++LDESGIVYI
Sbjct  841   DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI  900

Query  883   GAEVTAGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQV  942
             GAEV AGD+LVGKVTPKGETQLTPEEKLLRAIFGEKA+DVKD+SLR+P+G  GTVIDVQV
Sbjct  901   GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV  960

Query  943   FTRDGLEKDDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQESNGGG-TTKR  1001
             FTR+G+++D RA +I  ++L  YR DL ++ +IF+  A +RI R++ GQ++NGG     +
Sbjct  961   FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLAK  1020

Query  1002  GDKLSDDVLSGL-ELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATG  1060
             G +++ + L+GL    D  DI+ TDE +A++L  I+V L++K  E DE +  KK+KL  G
Sbjct  1021  GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKVSLQQKREEADELYEIKKKKLTQG  1080

Query  1061  DELTTGVLKVVKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLN  1120
             DEL  GV K+VKV++A+KRR+Q GDKMAGRHGNKGVVS ILPVEDMP+ A+G PVD+VLN
Sbjct  1081  DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN  1140

Query  1121  PLGVPSRMNVGQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGEQEEL  1180
             PLGVPSRMN+GQILE HLG AAKG+GE+ID+ML++QR   ELR FL+++YN   G++E+L
Sbjct  1141  PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKEQRKAGELREFLNRLYNG-SGKKEDL  1199

Query  1181  DTLTDEEILVLAGNLRKGVPLATPVFDGAEEGQIKELLELA------ELPRTG------Q  1228
             D LTDEEI+ LA NLRKG   A+PVFDGA+E +I+E+L LA      E+ + G      Q
Sbjct  1200  DALTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSDDPEVEKLGFNDSKTQ  1259

Query  1229  QILFDGRTGEQFDRPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR  1288
               L+DGR+GE FDR VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGGQR
Sbjct  1260  ITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQR  1319

Query  1289  FGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKE  1348
             FGEMEVWALEAYGAAYTLQEMLTVKSDDV GRT++Y+NIV G H +D GMPESFNVL KE
Sbjct  1320  FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLVKE  1379

Query  1349  IRSLGINIELK  1359
             IRSLG++I+L+
Sbjct  1380  IRSLGLDIDLE  1390


>Q9KJM5 DNA-directed RNA polymerase subunit beta [Bartonella quintana 
(strain Toulouse)]
Length=1383

 Score = 1511 bits (3913),  Expect = 0.0
 Identities = 776/1371 (57%), Positives = 1002/1371 (73%), Gaps = 25/1371 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M   +  +KR+RK FGK+P V + P L+ +Q  SY  FL   +    R D GLQA F+SV
Sbjct  7     MTSQFNGRKRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFKSV  66

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLII----KDRETKSI  116
             FPI  +SG A LEFV Y    P+FDV EC  R  TYAAP++V +RLI+    +D  +K I
Sbjct  67    FPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKDI  126

Query  117   KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA  176
             KD++EQ VYMG++PLMT NGTF++NGTERVIVSQ+HRSPGVFFDHDKGK+HSSGK L++A
Sbjct  127   KDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLFAA  186

Query  177   RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDF  236
             R+IPYRGSWLD EFDAKD++Y RIDRRRK+  + +L ALG + + IL  FY KV    D 
Sbjct  187   RVIPYRGSWLDIEFDAKDIIYARIDRRRKIPITSLLMALGMDASDILSTFYNKVTYERDG  246

Query  237   GSYQIDLVPERLRGEMAQFDIADND-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEYL  295
               ++I     R +G     D+ D D G+V+ E GK++  R  + +   GL  + + ++ L
Sbjct  247   DGWRIPYSVGRFKGVKLISDLVDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKITEDDL  306

Query  296   YERITAEDIT-LRDGDV-IAANTLLSHEIMVKLAEGGVKQFNILYTNDIDH---GSFVAD  350
                  AEDI   + G++ + A   +  + +  L +    Q NIL   DIDH   G+++ +
Sbjct  307   LGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILFDVSADQINIL---DIDHMNIGAYIRN  363

Query  351   TLRADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRL  410
             TL+ D    ++DAL +IY+VMRPGEPPT + A  +F++LFF  ERYDLS VGR+K N R+
Sbjct  364   TLKVDKNESQQDALFDIYRVMRPGEPPTMDTAAAMFHSLFFDPERYDLSAVGRVKMNLRM  423

Query  411   GRPYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTE  470
                     D    +   IL  EDI+ V++ LVE+R+G+GE+DDID+LGNRRVRSVGE+ E
Sbjct  424   --------DLDCPDTVRILRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELME  475

Query  471   NQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPL  530
             NQ+R+GL+R+ERA+KER+S  E D + PQDLINAKP AAA++EFFGSSQLSQFMDQ NPL
Sbjct  476   NQYRIGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPL  535

Query  531   SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKA  590
             SEITHKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ +A+ 
Sbjct  536   SEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARV  595

Query  591   NDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGE  650
             N +GF+E+PYRK++DG+V+ +V YLSA+EE    +AQA+S++DA+G   +E V  RH GE
Sbjct  596   NKYGFIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRFTDEFVVCRHAGE  655

Query  651   FVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVG  710
              +  P + V  MDVS +Q+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP + A+ P VG
Sbjct  656   VLMAPRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVG  715

Query  711   TGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQ  770
             TGME+ VARDSG  V AKRGG+++ VDA+R+VIR   E++   ++GVDIY L K+ RSNQ
Sbjct  716   TGMESIVARDSGAAVSAKRGGIVDQVDATRIVIRAT-EDLDPSKSGVDIYRLQKFQRSNQ  774

Query  771   NTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSER  830
             +TCINQ+ LV++GD+V +G+++ADGPSTD G+LALG+N+ VAFM WNGYNYEDSILLSER
Sbjct  775   STCINQRPLVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSER  834

Query  831   VLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGD  890
             ++ +D  TSIHI+E    ARDTKLG EEIT DIPNV E +L  LDE+GI+YIGAEV  GD
Sbjct  835   IVADDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEESLRNLDEAGIIYIGAEVQPGD  894

Query  891   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEK  950
             ILVGK+TPKGE+ +TPEEKLLRAIFGEKA+DV+D+S+R+P G  GTV++V+VF R G+EK
Sbjct  895   ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEK  954

Query  951   DDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQES-NGGGTTKRGDKLSDDV  1009
             D+RA+AIE+ +++   KD  +E  I +     R+  +L G+ +  G     +G KL + +
Sbjct  955   DERAMAIEREEIERLAKDRDDEQSILDRNVYARLTDMLTGKIAVEGPKGFSKGKKLDNTI  1014

Query  1010  LSGLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLK  1069
             +              DE +   +  ++    E    +  +F +K  K+  GDE+  GV+K
Sbjct  1015  MGHYPRSQWWQFTVEDEKLQSEIEALRRQYDESKEALQRRFMDKVEKVQRGDEMPPGVMK  1074

Query  1070  VVKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMN  1129
             +VKV++AVKR+IQPGDKMAGRHGNKGVVS ILP+EDMP   +G   D+VLNPLGVPSRMN
Sbjct  1075  MVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMN  1134

Query  1130  VGQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKV--GGEQEELDTLTDEE  1187
             VGQILETHLG A  G+G++I  ++   +   ++     +I N +      E +    +E 
Sbjct  1135  VGQILETHLGWACAGMGKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNES  1194

Query  1188  ILVLAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVG  1247
             +  LA  +RKGV +ATPVFDGA E  I  +LE A+L  +GQ +L+DGRTGE FDRPVTVG
Sbjct  1195  LYKLALQMRKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRPVTVG  1254

Query  1248  YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ  1307
             Y+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
Sbjct  1255  YIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ  1314

Query  1308  EMLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIEL  1358
             EMLTVKSDDV GRT++Y+ IV G+   + G+PESFNVL KE+RSL +N+EL
Sbjct  1315  EMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVEL  1365


>Q9KJG4 DNA-directed RNA polymerase subunit beta [Bartonella henselae 
(strain ATCC 49882 / DSM 28221 / CCUG 30454 / Houston 
1)]
Length=1383

 Score = 1510 bits (3910),  Expect = 0.0
 Identities = 777/1371 (57%), Positives = 1001/1371 (73%), Gaps = 25/1371 (2%)

Query  1     MAYSYTEKKRIRKNFGKLPSVMDAPYLLSIQVDSYRTFLQDGKSPKNREDIGLQAAFRSV  60
             M   +  +KR+RK FGK+P V + P L+ +Q  SY  FL   +    R D GLQA F+SV
Sbjct  7     MTSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQAVFKSV  66

Query  61    FPIESYSGNAALEFVEYGLGKPEFDVRECILRGSTYAAPMRVKIRLII----KDRETKSI  116
             FPI  +SG A LEFV Y    P+FDV EC  R  TYAAP++V +RLI+    +D  +K I
Sbjct  67    FPISDFSGTAMLEFVGYQFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDEDTGSKDI  126

Query  117   KDVREQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYSA  176
             KD++EQ VYMG++PLMT NGTF++NGTERVIVSQ+HRSPGVFFDHDKGK+HSSGK L++A
Sbjct  127   KDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLFAA  186

Query  177   RIIPYRGSWLDFEFDAKDLVYVRIDRRRKLLASVILRALGYNNAQILDLFYEKVPVYLDF  236
             R+IPYRGSWLD EFDAKD++Y RIDRRRK+  + +L ALG + + IL  FY KV    D 
Sbjct  187   RVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYNKVTYERDG  246

Query  237   GSYQIDLVPERLRGEMAQFDIADND-GKVIVEQGKRINARHVRQMEASGLTKLSVPDEYL  295
               ++I    +R +G     D+ D D G+V+ E GK++  R  + +   GL  + V ++ L
Sbjct  247   DGWRIPYSVDRFKGMKLVSDLIDADSGEVVAEAGKKLTVRAAKALAEKGLKAVKVSEDDL  306

Query  296   YERITAEDIT-LRDGDV-IAANTLLSHEIMVKLAEGGVKQFNILYTNDIDH---GSFVAD  350
                  AEDI   + G++ + A   +  + +  L +    Q +IL   DIDH   G+++ +
Sbjct  307   LGSYLAEDIVNYQTGEIYLEAGDEIDEKTLRVLFDVNADQIDIL---DIDHMNIGAYIRN  363

Query  351   TLRADTTMGREDALVEIYKVMRPGEPPTKEAAENLFNNLFFSSERYDLSPVGRMKFNRRL  410
             TL+ D    R+DAL +IY+VMRPGEPPT + AE +F++LFF  ERYDLS VGR+K N R+
Sbjct  364   TLKVDKNESRQDALFDIYRVMRPGEPPTMDTAEAMFHSLFFDPERYDLSAVGRVKMNLRM  423

Query  411   GRPYEVGTDQKSREVEGILSNEDIIDVLRTLVEIRNGKGEVDDIDHLGNRRVRSVGEMTE  470
                     D    +   +L  EDI+ V++ LVE+R+G+GE+DDID+LGNRRVRSVGE+ E
Sbjct  424   --------DLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELME  475

Query  471   NQFRVGLVRVERAVKERLSQAETDNLSPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPL  530
             NQ+R+GL+R+ERA+KER+S  E D + PQDLINAKP AAA++EFFGSSQLSQFMDQ NPL
Sbjct  476   NQYRIGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPL  535

Query  531   SEITHKRRVSALGPGGLTRERAGFEVRDVHQTHYGRVCPIETPEGPNIGLINSLSVYAKA  590
             SEITHKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ +A+ 
Sbjct  536   SEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARV  595

Query  591   NDFGFLETPYRKVVDGRVSDDVEYLSAIEEVGTVIAQADSAVDADGHLMEEMVSVRHQGE  650
             N +GF+E+PYRK++DG+V+ +V YLSA+EE    +AQA+S++DA+G L EE V  RH GE
Sbjct  596   NKYGFIESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRLSEEFVVCRHAGE  655

Query  651   FVRMPPEKVTHMDVSAQQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLLADKPLVG  710
              +  P + V  MDVS +Q+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP + A+ P VG
Sbjct  656   VLMAPRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVG  715

Query  711   TGMEANVARDSGVCVIAKRGGMIEFVDASRVVIRVNEEEMIAGEAGVDIYNLIKYTRSNQ  770
             TGME+ VARDSG  V A+R G+++ VDA+R+VIR   E++   ++GVDIY L K+ RSNQ
Sbjct  716   TGMESIVARDSGAAVAARRSGIVDQVDATRIVIRAT-EDLDPSKSGVDIYRLQKFQRSNQ  774

Query  771   NTCINQKVLVNLGDKVGRGDVLADGPSTDGGELALGQNMRVAFMTWNGYNYEDSILLSER  830
             +TCINQ+ LV++GD+V +G+++ADGPSTD G+LALG+N+ VAFM WNGYNYEDSILLSER
Sbjct  775   STCINQRPLVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSER  834

Query  831   VLQEDRLTSIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVTAGD  890
             ++ +D  TSIHI+E    ARDTKLG EEIT DIPNV E AL  LDE+GI+YIGAEV  GD
Sbjct  835   IVADDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGD  894

Query  891   ILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDSSLRVPSGTKGTVIDVQVFTRDGLEK  950
             ILVGK+TPKGE+ +TPEEKLLRAIFGEKA+DV+D+S+R+P G  GTV++V+VF R G+EK
Sbjct  895   ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEK  954

Query  951   DDRALAIEKAQLDAYRKDLKEEYKIFEEAARERIVRLLNGQES-NGGGTTKRGDKLSDDV  1009
             D+RA+AIE+ +++   KD  +E  I +     R+  +L G+ +  G     +  KL   +
Sbjct  955   DERAMAIEREEIERLAKDRDDEQSILDRNVYARLTDMLVGKVAVEGPKGFSKNKKLDTTI  1014

Query  1010  LSGLELVDLLDIQPTDEGIAERLSQIQVFLKEKSAEIDEKFAEKKRKLATGDELTTGVLK  1069
             +              DE +   +  ++    E    +  +F +K  K+  GDE+  GV+K
Sbjct  1015  MGHYPRSQWWQFTVEDEKLQNEIEALRNQYDESKEALQRRFMDKVEKVQRGDEMPPGVMK  1074

Query  1070  VVKVYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVPSRMN  1129
             +VKV++AVKR+IQPGDKMAGRHGNKGVVS ILP+EDMP   +G   D+VLNPLGVPSRMN
Sbjct  1075  MVKVFVAVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMN  1134

Query  1130  VGQILETHLGLAAKGLGEQIDKMLQQQRTIAELRIFLDKIYNKVGGE--QEELDTLTDEE  1187
             VGQILETHLG A  G+G++I  ++   +   ++     +I N +  +   E +    +E 
Sbjct  1135  VGQILETHLGWACAGMGKKIGDLVDLYQETGDILPLRQRIENLMPDDDHNEPVRQYDNES  1194

Query  1188  ILVLAGNLRKGVPLATPVFDGAEEGQIKELLELAELPRTGQQILFDGRTGEQFDRPVTVG  1247
             +  LA  +RKGV +ATPVFDGA E  I  +LE A L  +GQ  L+DGRTGE FDRPVTVG
Sbjct  1195  LYKLALQMRKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVG  1254

Query  1248  YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ  1307
             Y+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
Sbjct  1255  YIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ  1314

Query  1308  EMLTVKSDDVEGRTRIYKNIVDGNHYMDPGMPESFNVLTKEIRSLGINIEL  1358
             EMLTVKSDDV GRT++Y+ IV G+   + G+PESFNVL KE+RSL +N+EL
Sbjct  1315  EMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVEL  1365



Lambda      K        H        a         alpha
   0.317    0.136    0.382    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 40045540


  Database: ecd0fdd16f1aeda3cbe5bbaa00c097f5.SwissProt.fasta
    Posted date:  May 20, 2024  1:32 PM
  Number of letters in database: 32,699
  Number of sequences in database:  24



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40