BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 616de09dcc4589fac088c5094c18c302.SwissProt.fasta
6 sequences; 1,294 total letters
Query= ACIAD0314
Length=209
Score E
Sequences producing significant alignments: (Bits) Value
P17266 Outer membrane protein W [Vibrio cholerae serotype O1 (str... 91.3 1e-26
P55561 Uncharacterized outer-membrane protein y4mB [Sinorhizobium... 80.9 1e-22
P0A916 Outer membrane protein W [Shigella flexneri] 75.9 6e-21
P0A915 Outer membrane protein W [Escherichia coli (strain K12)] 75.9 6e-21
Q8Z7E2 Outer membrane protein W [Salmonella typhi] 74.7 1e-20
Q8ZP50 Outer membrane protein W [Salmonella typhimurium (strain L... 71.6 2e-19
>P17266 Outer membrane protein W [Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961)]
Length=217
Score = 91.3 bits (225), Expect = 1e-26
Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 26/219 (12%)
Query 7 VVALMGLSSS-VFA---GGWQVKIGGSVLAPSKDNNTLADGAVTNAKADHAFSFTP---- 58
+ L LSS+ VFA G + V+ G + + P+ ++ V N +++ A +
Sbjct 8 LAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDK-----VLNTQSELAVNSNTQLGL 62
Query 59 SIEYFFGDTNISSELLLATPFKHDV-TANVAGGPSETIASFKHLPPTLTVKYNF--KNST 115
++ Y F D NIS E+L ATPF H + T+ G I KHLPPT V+Y F NST
Sbjct 63 TLGYMFTD-NISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYFGEANST 121
Query 116 GFTPYIGIGATAVIAWDEETKGSLTG---TELKAENAYGIAGQVGFNFQPADAKNWGVFA 172
F PY+G G +DE G+ T ++LK ++++G+A VGF++ D+ W + A
Sbjct 122 -FRPYVGAGLNYTTFFDESFNGTGTNAGLSDLKLDDSWGLAANVGFDYMLNDS--WFLNA 178
Query 173 DVRYADVGSELKWNG---QKIGTLEVNPWVYSVGYSYKF 208
V YA++ + + K +E+NPWV+ + YKF
Sbjct 179 SVWYANIETTATYKAGADAKSTDVEINPWVFMIAGGYKF 217
>P55561 Uncharacterized outer-membrane protein y4mB [Sinorhizobium
fredii (strain NBRC 101917 / NGR234)]
Length=229
Score = 80.9 bits (198), Expect = 1e-22
Identities = 55/193 (28%), Positives = 101/193 (52%), Gaps = 17/193 (9%)
Query 22 WQVKIGGSVLAPSKDNNTLADGAVTNAKADHAFSFTPSIE--YFFGDTNISSELLLATPF 79
WQ+++ G + ++D+ ++ V + ++ S P ++ YFF D NI++EL+L T +
Sbjct 48 WQIRVRGLGVL-TEDSGSI--NGVPGSDLSYSDSLIPELDISYFFTD-NIAAELILGTTY 103
Query 80 KHDVTANVAGGPSETIASFKHLPPTLTVKYNFKNSTGFTPYIGIGATAVIAWDEETKGSL 139
+ G P + LPPTLT++Y+F + F PY+G G + +++ K
Sbjct 104 ANIKEVGAVGVP---VGKAWLLPPTLTLQYHFTDFGAFKPYLGAGINYSLFYNQSEKAGF 160
Query 140 TGTELKAENAYGIAGQVGFNFQPADAKNWGVFADVRYADVGSELKWNGQKIGTL----EV 195
+L +N G A QVGF++ + +WGV DV+ + +E K + +G L ++
Sbjct 161 --HDLDVDNHVGAALQVGFDYMVDE--HWGVNFDVKKIFLETEWKADHDVLGPLSGKAKI 216
Query 196 NPWVYSVGYSYKF 208
+PW+ G +Y+F
Sbjct 217 DPWLIGAGVTYRF 229
>P0A916 Outer membrane protein W [Shigella flexneri]
Length=212
Score = 75.9 bits (185), Expect = 6e-21
Identities = 66/222 (30%), Positives = 106/222 (48%), Gaps = 29/222 (13%)
Query 4 KLFVVALMG---LSSSVFA---GGWQVKIGGSVLAPSKDNN----TLADGAVTNAKADHA 53
KL V AL LS S FA G + ++ G + + P++ +L +VTN
Sbjct 3 KLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTN-NTQLG 61
Query 54 FSFTPSIEYFFGDTNISSELLLATPFKHDVTANVAGGPSETIASFKHLPPTLTVKYNFKN 113
+FT + NI ELL ATPF+H + G IA+ HLPPTL ++ F +
Sbjct 62 LTFT-----YMATDNIGVELLAATPFRHKIGTRATG----DIATVHHLPPTLMAQWYFGD 112
Query 114 -STGFTPYIGIGATAVIAWDE--ETKGSLTG-TELKAENAYGIAGQVGFNFQPADAKNWG 169
S+ F PY+G G +D G G ++L ++++G AGQVG ++ ++W
Sbjct 113 ASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY--LINRDWL 170
Query 170 VFADVRYADVGSELKW---NGQKIGTLEVNPWVYSVGYSYKF 208
V V Y D+ + + Q+ ++ ++PWV+ Y+F
Sbjct 171 VNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 212
>P0A915 Outer membrane protein W [Escherichia coli (strain K12)]
Length=212
Score = 75.9 bits (185), Expect = 6e-21
Identities = 66/222 (30%), Positives = 106/222 (48%), Gaps = 29/222 (13%)
Query 4 KLFVVALMG---LSSSVFA---GGWQVKIGGSVLAPSKDNN----TLADGAVTNAKADHA 53
KL V AL LS S FA G + ++ G + + P++ +L +VTN
Sbjct 3 KLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGGTLGSLGGFSVTN-NTQLG 61
Query 54 FSFTPSIEYFFGDTNISSELLLATPFKHDVTANVAGGPSETIASFKHLPPTLTVKYNFKN 113
+FT + NI ELL ATPF+H + G IA+ HLPPTL ++ F +
Sbjct 62 LTFT-----YMATDNIGVELLAATPFRHKIGTRATG----DIATVHHLPPTLMAQWYFGD 112
Query 114 -STGFTPYIGIGATAVIAWDE--ETKGSLTG-TELKAENAYGIAGQVGFNFQPADAKNWG 169
S+ F PY+G G +D G G ++L ++++G AGQVG ++ ++W
Sbjct 113 ASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDY--LINRDWL 170
Query 170 VFADVRYADVGSELKW---NGQKIGTLEVNPWVYSVGYSYKF 208
V V Y D+ + + Q+ ++ ++PWV+ Y+F
Sbjct 171 VNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF 212
>Q8Z7E2 Outer membrane protein W [Salmonella typhi]
Length=212
Score = 74.7 bits (182), Expect = 1e-20
Identities = 66/222 (30%), Positives = 108/222 (49%), Gaps = 28/222 (13%)
Query 4 KLFVVALMGL----SSSVFA---GGWQVKIGGSVLAPSKD-NNTLA--DGAVTNAKADHA 53
K F VA + L S S FA G + ++ G + + P++ TL +G +
Sbjct 2 KKFTVAALALTTLLSGSAFAHEAGEFFMRAGPATVRPTEGAGGTLGHLNGFDVSNNTQLG 61
Query 54 FSFTPSIEYFFGDTNISSELLLATPFKHDVTANVAGGPSETIASFKHLPPTLTVKYNFKN 113
+FT + NI ELL ATPF+H V G IA+ LPPTL ++ F +
Sbjct 62 LTFT-----YMATDNIGVELLAATPFRHKVGTGATG----DIATVHLLPPTLMAQWYFGD 112
Query 114 STG-FTPYIGIGATAVIAWDEE--TKGSLTG-TELKAENAYGIAGQVGFNFQPADAKNWG 169
S+ PY+G+G +D + G TG ++L ++++G AGQVG ++ ++W
Sbjct 113 SSSKVRPYVGVGVNYTTFFDNDFNDNGKKTGLSDLSFKDSWGAAGQVGVDY--LINRDWL 170
Query 170 VFADVRYADVG--SELKWNG-QKIGTLEVNPWVYSVGYSYKF 208
+ A V Y D+ + K G Q+ ++ ++PWV+ Y+F
Sbjct 171 IGASVWYMDIDTTANYKMGGVQQHDSVRLDPWVFMFSAGYRF 212
>Q8ZP50 Outer membrane protein W [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=212
Score = 71.6 bits (174), Expect = 2e-19
Identities = 65/222 (29%), Positives = 106/222 (48%), Gaps = 28/222 (13%)
Query 4 KLFVVALMGL----SSSVFA---GGWQVKIGGSVLAPSKD-NNTLA--DGAVTNAKADHA 53
K F VA + L S S FA G + ++ G + + P++ TL +G +
Sbjct 2 KKFTVAALALTTLLSGSAFAHEAGEFFMRAGPATVRPTEGAGGTLGHLNGFDVSNNTQLG 61
Query 54 FSFTPSIEYFFGDTNISSELLLATPFKHDVTANVAGGPSETIASFKHLPPTLTVKYNFKN 113
+FT + NI ELL ATPF+H V G IA+ LPPTL ++ F +
Sbjct 62 LTFT-----YMATDNIGVELLAATPFRHKVGTGATG----DIATVHLLPPTLMAQWYFGD 112
Query 114 STG-FTPYIGIGATAVIAWDEE--TKGSLTG-TELKAENAYGIAGQVGFNFQPADAKNWG 169
S+ PY+G+G +D + G G ++L ++++G AGQVG ++ ++W
Sbjct 113 SSSKVRPYVGVGVNYTTFFDNDFNDNGKNAGLSDLSFKDSWGAAGQVGVDY--LINRDWL 170
Query 170 VFADVRYADVG--SELKWNG-QKIGTLEVNPWVYSVGYSYKF 208
+ A V Y D+ + K G Q ++ ++PWV+ Y+F
Sbjct 171 IGASVWYMDIDTTANYKMGGVQHHDSVRLDPWVFMFSAGYRF 212
Lambda K H a alpha
0.318 0.135 0.413 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 192896
Database: 616de09dcc4589fac088c5094c18c302.SwissProt.fasta
Posted date: May 20, 2024 6:41 AM
Number of letters in database: 1,294
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
