BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 644fc3c8e908a411d5c13f1cb9b0381f.TrEMBL.fasta
12 sequences; 1,750 total letters
Query= ACIAD0352
Length=148
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SJV5 Putative pre-16S rRNA nuclease [Acinetobacter sp] 295 1e-108
A0A1P8ELX0 Putative pre-16S rRNA nuclease [Acinetobacter soli] 260 6e-95
A0A427M2X6 Putative pre-16S rRNA nuclease [Acinetobacter soli] 259 3e-94
N9BYN8 Putative pre-16S rRNA nuclease [Acinetobacter soli NIPH 2899] 259 3e-94
A0A0M1I2T4 Putative pre-16S rRNA nuclease [Acinetobacter sp. C15] 258 5e-94
A0A3R9C5M1 Putative pre-16S rRNA nuclease [Acinetobacter sp. FDAA... 258 7e-94
A0A3A8EDP6 Putative pre-16S rRNA nuclease [Acinetobacter guerrae] 255 8e-93
A0A7T9UJ70 Putative pre-16S rRNA nuclease [Acinetobacter ursingii] 254 2e-92
N9DEN9 Putative pre-16S rRNA nuclease [Acinetobacter ursingii ANC... 253 3e-92
A0A3L9M7J8 Putative pre-16S rRNA nuclease [Acinetobacter sp. 2JN-4] 251 2e-91
C1IXZ0 Putative pre-16S rRNA nuclease [Klebsiella aerogenes] 120 2e-39
Q8VVM5 Putative pre-16S rRNA nuclease [Escherichia coli] 120 2e-39
>A0A7G2SJV5 Putative pre-16S rRNA nuclease [Acinetobacter sp]
Length=147
Score = 295 bits (755), Expect = 1e-108
Identities = 147/147 (100%), Positives = 147/147 (100%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT
Sbjct 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AKKIAADSIAASLLIQSWYRAPQGVQP
Sbjct 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
>A0A1P8ELX0 Putative pre-16S rRNA nuclease [Acinetobacter soli]
Length=147
Score = 260 bits (665), Expect = 6e-95
Identities = 127/147 (86%), Positives = 135/147 (92%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MPD +H MIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIP+W QLLKIV+EW+PT
Sbjct 1 MPDISTHSMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPNWEQLLKIVQEWKPT 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDEL+ Y QGR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELDHYHSQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AK +AADS+AA LLIQSWYR P G+ P
Sbjct 121 AKGVAADSLAAGLLIQSWYRNPTGITP 147
>A0A427M2X6 Putative pre-16S rRNA nuclease [Acinetobacter soli]
Length=147
Score = 259 bits (661), Expect = 3e-94
Identities = 126/147 (86%), Positives = 135/147 (92%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP+ +H MIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIP+W QLLKIV+EW+PT
Sbjct 1 MPEISTHSMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPNWEQLLKIVQEWKPT 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDEL+ Y QGR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELDHYHSQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AK +AADS+AA LLIQSWYR P G+ P
Sbjct 121 AKGVAADSLAAGLLIQSWYRNPTGITP 147
>N9BYN8 Putative pre-16S rRNA nuclease [Acinetobacter soli NIPH
2899]
Length=147
Score = 259 bits (661), Expect = 3e-94
Identities = 126/147 (86%), Positives = 135/147 (92%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP+ +H MIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIP+W QLLKIV+EW+PT
Sbjct 1 MPEISTHSMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPNWEQLLKIVQEWKPT 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDEL+ Y QGR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELDHYHSQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AK +AADS+AA LLIQSWYR P G+ P
Sbjct 121 AKGVAADSLAAGLLIQSWYRNPTGITP 147
>A0A0M1I2T4 Putative pre-16S rRNA nuclease [Acinetobacter sp.
C15]
Length=147
Score = 258 bits (659), Expect = 5e-94
Identities = 126/147 (86%), Positives = 134/147 (91%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MPD +H MIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIP+W QLLKIV+EW+PT
Sbjct 1 MPDISTHSMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPNWEQLLKIVQEWKPT 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNI TWMVDERLTTREARDEL+ Y QGR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNIITWMVDERLTTREARDELDHYHSQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AK +AADS+AA LLIQSWYR P G+ P
Sbjct 121 AKGVAADSLAAGLLIQSWYRNPTGITP 147
>A0A3R9C5M1 Putative pre-16S rRNA nuclease [Acinetobacter sp.
FDAARGOS_515]
Length=147
Score = 258 bits (658), Expect = 7e-94
Identities = 123/147 (84%), Positives = 135/147 (92%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP+ S QMIMAFDFGTQKMG+A+GQ+ IES+ PLALFPMKDGIPDWNQLLKIVKEWQP
Sbjct 1 MPEMPSMQMIMAFDFGTQKMGMAVGQSTIESANPLALFPMKDGIPDWNQLLKIVKEWQPN 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELS RARKFARRLRHQTNI TWMVDERLTTREARDELESY +QGR
Sbjct 61 LFLVGLPLNMDDSESELSTRARKFARRLRHQTNIETWMVDERLTTREARDELESYHDQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
K+++ADS+AA+LLIQSWY PQG+QP
Sbjct 121 GKRLSADSLAAALLIQSWYHHPQGIQP 147
>A0A3A8EDP6 Putative pre-16S rRNA nuclease [Acinetobacter guerrae]
Length=147
Score = 255 bits (651), Expect = 8e-93
Identities = 121/147 (82%), Positives = 136/147 (93%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP+++S MIMAFDFGTQKMGIA+GQ+AIES+ PLALFPMKDGIP+W+QLLKIVKEWQP
Sbjct 1 MPETVSMHMIMAFDFGTQKMGIAVGQSAIESANPLALFPMKDGIPNWDQLLKIVKEWQPN 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELS RARKFARRLRHQTNI TWMVDERLTTREARDEL+ Y QGR
Sbjct 61 LFLVGLPLNMDDSESELSTRARKFARRLRHQTNIETWMVDERLTTREARDELDHYHHQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
K+++ADS+AA+LLIQSWYR PQG+QP
Sbjct 121 GKRLSADSLAAALLIQSWYRLPQGIQP 147
>A0A7T9UJ70 Putative pre-16S rRNA nuclease [Acinetobacter ursingii]
Length=147
Score = 254 bits (649), Expect = 2e-92
Identities = 120/147 (82%), Positives = 135/147 (92%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP++ S QMIMAFDFGTQKMG+A+GQ+ IES+ PLALFPMKDGIPDWNQLLKIVKEWQP
Sbjct 1 MPETPSMQMIMAFDFGTQKMGMAVGQSTIESANPLALFPMKDGIPDWNQLLKIVKEWQPN 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELS RARKFARRLRHQTNI TWMVDERLTTREARDEL++Y +QGR
Sbjct 61 LFLVGLPLNMDDSESELSTRARKFARRLRHQTNIETWMVDERLTTREARDELDAYHDQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
K+++ADS+AA+LLIQSWY P G+QP
Sbjct 121 GKRLSADSLAAALLIQSWYHHPHGIQP 147
>N9DEN9 Putative pre-16S rRNA nuclease [Acinetobacter ursingii
ANC 3649]
Length=147
Score = 253 bits (647), Expect = 3e-92
Identities = 120/147 (82%), Positives = 134/147 (91%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MP+ S MIMAFDFGTQKMG+A+GQ+ IES+ PLALFPMKDGIPDWNQLLKIVKEWQP
Sbjct 1 MPEMPSMHMIMAFDFGTQKMGMAVGQSTIESANPLALFPMKDGIPDWNQLLKIVKEWQPN 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELS RARKFARRLRHQTNI TWMVDERLTTREARDEL++Y +QGR
Sbjct 61 LFLVGLPLNMDDSESELSTRARKFARRLRHQTNIETWMVDERLTTREARDELDAYHDQGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
K+++ADS+AA+LLIQSWY PQG+QP
Sbjct 121 GKRLSADSLAAALLIQSWYHHPQGIQP 147
>A0A3L9M7J8 Putative pre-16S rRNA nuclease [Acinetobacter sp.
2JN-4]
Length=147
Score = 251 bits (642), Expect = 2e-91
Identities = 123/147 (84%), Positives = 134/147 (91%), Gaps = 0/147 (0%)
Query 1 MPDSMSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPT 60
MPD+ S Q IMAFDFGTQKMGIAIGQ++IES+ PL LF MKDGIPDWNQLLK+VKEWQP
Sbjct 1 MPDNKSSQSIMAFDFGTQKMGIAIGQSSIESTNPLPLFIMKDGIPDWNQLLKLVKEWQPN 60
Query 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGR 120
LFLVGLPLNMDDSESELSARARKFARRLRHQTNI TWMVDERLTTREAR+ELE YQE+GR
Sbjct 61 LFLVGLPLNMDDSESELSARARKFARRLRHQTNIETWMVDERLTTREAREELEFYQERGR 120
Query 121 AKKIAADSIAASLLIQSWYRAPQGVQP 147
AK+++ADS AA+LLIQSWYR P GV P
Sbjct 121 AKRLSADSFAAALLIQSWYRDPTGVTP 147
>C1IXZ0 Putative pre-16S rRNA nuclease [Klebsiella aerogenes]
Length=140
Score = 120 bits (300), Expect = 2e-39
Identities = 58/134 (43%), Positives = 84/134 (63%), Gaps = 0/134 (0%)
Query 5 MSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLV 64
MS + IM FD+GT+ +G+AIGQ S+ PL DGIP+W+++ K++KEWQP L +V
Sbjct 1 MSSRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVV 60
Query 65 GLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKI 124
GLPLNMD ++ E++ RARKF RL + DERLTT +AR L K
Sbjct 61 GLPLNMDGTDQEITVRARKFGNRLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKG 120
Query 125 AADSIAASLLIQSW 138
+ D ++A L++++W
Sbjct 121 SVDGVSAQLIVEAW 134
>Q8VVM5 Putative pre-16S rRNA nuclease [Escherichia coli]
Length=140
Score = 120 bits (300), Expect = 2e-39
Identities = 58/134 (43%), Positives = 84/134 (63%), Gaps = 0/134 (0%)
Query 5 MSHQMIMAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLV 64
MS + IM FD+GT+ +G+AIGQ S+ PL DGIP+W+++ K++KEWQP L +V
Sbjct 1 MSSRSIMGFDYGTKSIGVAIGQEITGSARPLRSLKANDGIPNWDEIEKLLKEWQPDLLVV 60
Query 65 GLPLNMDDSESELSARARKFARRLRHQTNITTWMVDERLTTREARDELESYQEQGRAKKI 124
GLPLNMD ++ E++ RARKF RL + DERLTT +AR L K
Sbjct 61 GLPLNMDGTDQEITVRARKFGNRLHGRFGKPVEFKDERLTTTDARARLFERGGYKALDKG 120
Query 125 AADSIAASLLIQSW 138
+ D ++A L++++W
Sbjct 121 SVDGVSAQLIVEAW 134
Lambda K H a alpha
0.323 0.133 0.400 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 158456
Database: 644fc3c8e908a411d5c13f1cb9b0381f.TrEMBL.fasta
Posted date: May 9, 2024 8:04 AM
Number of letters in database: 1,750
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
