BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bc602d1a71005cfb9b54d32de77abd5b.SwissProt.fasta
8 sequences; 4,800 total letters
Query= ACIAD0378
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
P0DV98 Retron Vc95 probable ATPase [Vibrio cholerae serotype O1 b... 100 3e-26
Q47527 Retron Ec83 probable ATPase [Escherichia coli] 100 4e-26
P0DV91 Retron Ec78 probable ATPase [Escherichia coli] 83.6 2e-20
A9VQW7 Septu protein PtuA [Bacillus mycoides (strain KBAB4)] 43.1 1e-07
Q5N0Y2 DNA replication and repair protein RecF [Synechococcus sp.... 37.4 6e-06
Q31KY9 DNA replication and repair protein RecF [Synechococcus elo... 37.4 6e-06
P58301 DNA double-strand break repair Rad50 ATPase [Pyrococcus fu... 37.0 1e-05
Q196W6 Uncharacterized protein 094L [Invertebrate iridescent viru... 36.2 2e-05
>P0DV98 Retron Vc95 probable ATPase [Vibrio cholerae serotype
O1 biovar El Tor]
Length=514
Score = 100 bits (250), Expect = 3e-26
Identities = 108/459 (24%), Positives = 193/459 (42%), Gaps = 68/459 (15%)
Query 1 MKLKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHIFQALSWFPARFKDS 60
++L++I L F L +F + K T+I+G GK+T+L+ I + L + +
Sbjct 62 IRLRNISLYDYKKFSKL--KFTSSEKNTTIIIGNNGSGKSTILESISKCLQFLSDNIR-- 117
Query 61 RTAGIVTLDQDISFQKTQSKTAISVHFPAELGVLSDASDISNQDQSSCSWRLYKTLTASG 120
+ + + FQ ++ I++H + ++ +I N SCS LT +
Sbjct 118 -----IQNNNNYKFQDSE----INIHSISGQTIVRCILEIENDFSFSCS------LTKNR 162
Query 121 TGFSQVETQQLEQ---MVELYQHAIKQDP-LQSLPVIAYYPADRFI-----NEINLLSKN 171
S+ + +LE+ + +YQ + + D S P++AYYP +R + + + +
Sbjct 163 ENISRKVSSELEEFKALARMYQRSNELDNNTLSYPLLAYYPVERSVTLKRDDAVKYYERK 222
Query 172 IPAVFQPSAAYDISILPFTTFARFFEWLREVSDIENAQAAQ------------------- 212
S + + F FF W +E+ DI N A
Sbjct 223 KAKYSDKSEGLKNAFDGTSNFNDFFSWYKEIDDIINEFKANDSITKEEIEYLLSKTDNKE 282
Query 213 ----LLQQLTQQNAIDNEQDVQQLLFHAQAQLKTPHLQALKNSLQHIFPDLTDFYLEYHP 268
L+ QL ++ N + ++ L Q + ++ S++ D+ + P
Sbjct 283 KIGSLISQLLEKKNNYNNNEDREFLIRQQ--------KVIQESIKTFVSDIDQVKISRTP 334
Query 269 KLQLMVCYQDQIIQYQQLSNSLKIWIALIGDLVRRLCLLNPLSLYPCLEGEGIILIDQID 328
L + V I LS K IAL+ D+ RRL +LNP SL L G GI+LID+ID
Sbjct 335 HLDMTVIKNGSEISIFNLSQGEKTLIALVSDIARRLVILNP-SLENPLNGYGIVLIDEID 393
Query 329 TQLDQMLSREILIRLNQAFPQVQIIATGNRDELLEHTTSYQCYKLSHQGIVPIELGQPTK 388
L + I+ +L FP +Q I + + +L TS Q K+ ++ +L PT
Sbjct 394 LHLHPKWQQTIVQKLENTFPNIQFILSTHSPLVLTTVTSEQ-IKIINELDYRFKLLSPT- 451
Query 389 LYDEIYSHLFDETSADTGLITSLSSFTTENFDQLLSQIE 427
S+ F + ++D I S + +++L+ I+
Sbjct 452 ------SNPFGKNASDALAIMETSESPLVHSEEILALIK 484
>Q47527 Retron Ec83 probable ATPase [Escherichia coli]
Length=542
Score = 100 bits (249), Expect = 4e-26
Identities = 117/495 (24%), Positives = 218/495 (44%), Gaps = 91/495 (18%)
Query 1 MKLKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHIFQALSWFPARFKDS 60
+++ IHL++ F+ L ++F K T+++G GK+T+L I + L+ +R
Sbjct 61 LRVADIHLENYKGFESLIMDFSMK-KNSTILVGNNGCGKSTILDAIQKGLTHLSSRLSTR 119
Query 61 RTAGIVTLDQDISFQKTQSKTAISVHFP---AELGVLSDASDISNQDQSSCSWRLYKTLT 117
G ++ +K Q+ +I++++ ++ ++ +D++ ++
Sbjct 120 SHNGDGIEKHEL--RKGQNYASIAINYDYMGIRFPMIIATTEPGYEDRAKSNY------- 170
Query 118 ASGTGFSQVETQQLEQMVELYQHAIKQDPLQSLPVIAYYPADRFINEINLL----SKNI- 172
SG + ++ +++ A +P S P+IA Y +R N+++ S+ I
Sbjct 171 -SG----------INELGSIFKTAHSINPNVSFPLIAMYTVER-ANDVSTRDIENSEEIK 218
Query 173 -PAVFQPSAAYDISILPFTTFARFFEWLREVSDIENAQAAQ------------------L 213
++ AY+ S+ F FF W +E+ +IEN+ A L
Sbjct 219 EAQIWDKFKAYNKSLTGKADFKLFFRWFKELIEIENSDNADITALRAEIRAKEKDLDNPL 278
Query 214 LQQLTQQNAIDNEQDVQQLLFHAQAQLK-------------TPHLQALKNSLQHIFPDLT 260
L+ L +N N + ++LL Q LK + L +++++ P +
Sbjct 279 LKALLAEN--KNSETTKKLLEDHQNSLKVLKEKLNSYYSVNSKTLHTVEDAMYSFLPGFS 336
Query 261 DFYLEYHPKLQLMVCYQDQIIQYQQLSNSLKIWIALIGDLVRRLCLLNPLSLYPCLEGEG 320
+ L+ P L L+V + + QLS K +ALI D+ RRL LLNP S+ P L+G G
Sbjct 337 NLKLQRAP-LDLIVDKNNVSLSVLQLSQGEKTILALIADIARRLTLLNPNSVNP-LDGTG 394
Query 321 IILIDQIDTQLDQMLSREILIRLNQAFPQVQIIATGNRDELLEHTTSYQCYKLSHQGIVP 380
I+LID+ID L + I+ RL + F +Q I T + ++ C+ + Q I
Sbjct 395 IVLIDEIDLHLHPSWQQNIIPRLEKTFKNIQFIVTTHSPQV--------CHTIDSQNIWL 446
Query 381 IELGQPTKLYDEIYSHLFDETSADTGLITSLSSFTTENFDQLLSQIEYLTEDQKAAIIRL 440
++ GQ K A G+ ++SS+ EN L + ED+ +++
Sbjct 447 LKNGQKFK--------------APKGVRGAISSWVLEN---LFEVAQRPPEDKYTKLLQE 489
Query 441 IKPDSATEQDASDHA 455
K +E+ AS+ A
Sbjct 490 YKNLVFSEKYASEDA 504
Score = 18.1 bits (35), Expect = 6.6
Identities = 15/49 (31%), Positives = 20/49 (41%), Gaps = 13/49 (27%)
Query 358 RDELLEHTTSYQCYKL---SHQGIVPIELGQPTKLYDEIYSHLFDETSA 403
+ E + +SYQ YK+ G+ P DE S F E SA
Sbjct 15 KSESGDFASSYQLYKVFGSKEYGVEP----------DEKMSDYFKELSA 53
>P0DV91 Retron Ec78 probable ATPase [Escherichia coli]
Length=550
Score = 83.6 bits (205), Expect = 2e-20
Identities = 92/379 (24%), Positives = 162/379 (43%), Gaps = 45/379 (12%)
Query 3 LKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHIFQALSWFPARF-KDSR 61
L+ + LK F L ++F+ + +T+I+G GKT++L I + LSWF A K+
Sbjct 66 LRRLTLKDFRRFSLLEIKFE---EDLTVIIGNNGKGKTSILYAIAKTLSWFVANILKEGG 122
Query 62 TAGIVTLDQDISFQKTQSKTAISVHFPAELGVLSDASDISNQDQSSCSWRLYKTLTASGT 121
+ ++ DI +S F G+ S +S + R
Sbjct 123 SGQRLSELTDIKNDAENRYADVSSTFFFGKGLKSVPIRLSRSALGTAERR---------- 172
Query 122 GFSQVETQQLEQMVELYQHAIKQDPLQSLPVIAYYPADRFINEINLLSKNIPAVFQPSAA 181
E + + ++++ I + +LP A Y +R N + A
Sbjct 173 ---DSEVKPARDLADIWR-VINEAKTINLPTFALYNVERSQPFNRNTKDNAGRREERFDA 228
Query 182 YDISILPFTTFARFFEWL-----REVSDIENAQAAQLLQQLTQ-QNAIDNEQ-DVQQLLF 234
Y ++ F F EW R +SDI ++ +L QQ+ Q ++D V+ LL
Sbjct 229 YSQALGGAGRFDHFVEWYIYLHKRTISDISSS-IKELEQQVNDLQRSVDGGMVSVKSLLE 287
Query 235 HAQAQLK---------------TPHLQA--LKNSLQHIFPDLTDFYLEYHPKLQLMVCYQ 277
+ +L T +Q ++ S+ + P ++ ++E L+
Sbjct 288 QMKLKLSEASERNDAAVSSKMVTESVQKSIVEKSICSVVPSISKIWVEMTTGSDLVKVTN 347
Query 278 D-QIIQYQQLSNSLKIWIALIGDLVRRLCLLNPLSLYPCLEGEGIILIDQIDTQLDQMLS 336
D + QLS+ +++++L+ DL RR+ +LNPL P LEG GI+LID+I+ L
Sbjct 348 DGHDVTIDQLSDGQRVFLSLVADLARRMVMLNPLLENP-LEGRGIVLIDEIELHLHPKWQ 406
Query 337 REILIRLNQAFPQVQIIAT 355
+E+++ L FP +Q I T
Sbjct 407 QEVILNLRSVFPNIQFIIT 425
>A9VQW7 Septu protein PtuA [Bacillus mycoides (strain KBAB4)]
Length=709
Score = 43.1 bits (100), Expect = 1e-07
Identities = 26/72 (36%), Positives = 41/72 (57%), Gaps = 5/72 (7%)
Query 284 QQLSNSLKIWIALIGDLVRRLCLLNPLSLYPCLEGEGIILIDQIDTQLDQMLSREILIRL 343
+ LS+ + IAL D++ + + + + EGI+LID+ID L + EI+ RL
Sbjct 503 EDLSDGYQTIIALATDIMMVM-----KNRWRNFDAEGIVLIDEIDAHLHPRWNIEIVSRL 557
Query 344 NQAFPQVQIIAT 355
AFP++Q IAT
Sbjct 558 KNAFPKIQFIAT 569
Score = 23.9 bits (50), Expect = 0.11
Identities = 11/47 (23%), Positives = 28/47 (60%), Gaps = 3/47 (6%)
Query 3 LKSIHLKHTGPFQDLHVEFDYA---HKPITLILGEQAVGKTTLLKHI 46
++ I + + +++ ++F + + P ++LGE VGK+++L+ I
Sbjct 304 IEKIEIYNFKSIRNMKIDFTLSKSSNAPWLMLLGENGVGKSSILQAI 350
Score = 20.8 bits (42), Expect = 0.99
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 0/18 (0%)
Query 308 NPLSLYPCLEGEGIILID 325
NPLSL ++GE +L++
Sbjct 572 NPLSLRGLIDGEVAVLLE 589
>Q5N0Y2 DNA replication and repair protein RecF [Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)]
Length=387
Score = 37.4 bits (85), Expect = 6e-06
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (7%)
Query 1 MKLKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHI 46
M L S+HL+H ++D V+F P T++LGE A GKT LL+ +
Sbjct 1 MFLHSLHLQHFRNYRDQTVQFQ---APKTILLGENAQGKTNLLEAV 43
Score = 17.7 bits (34), Expect = 8.5
Identities = 5/9 (56%), Positives = 8/9 (89%), Gaps = 0/9 (0%)
Query 276 YQDQIIQYQ 284
Y+DQ +Q+Q
Sbjct 14 YRDQTVQFQ 22
Score = 17.7 bits (34), Expect = 8.5
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query 307 LNPLSLYPCLEGEG-IILIDQIDTQLDQMLSREILIRLNQAF 347
L L L + GE ++L+D + +LD +++L + F
Sbjct 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIANRF 337
>Q31KY9 DNA replication and repair protein RecF [Synechococcus
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=387
Score = 37.4 bits (85), Expect = 6e-06
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (7%)
Query 1 MKLKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHI 46
M L S+HL+H ++D V+F P T++LGE A GKT LL+ +
Sbjct 1 MFLHSLHLQHFRNYRDQTVQFQ---APKTILLGENAQGKTNLLEAV 43
Score = 17.7 bits (34), Expect = 8.5
Identities = 5/9 (56%), Positives = 8/9 (89%), Gaps = 0/9 (0%)
Query 276 YQDQIIQYQ 284
Y+DQ +Q+Q
Sbjct 14 YRDQTVQFQ 22
Score = 17.7 bits (34), Expect = 8.5
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query 307 LNPLSLYPCLEGEG-IILIDQIDTQLDQMLSREILIRLNQAF 347
L L L + GE ++L+D + +LD +++L + F
Sbjct 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIANRF 337
>P58301 DNA double-strand break repair Rad50 ATPase [Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=882
Score = 37.0 bits (84), Expect = 1e-05
Identities = 30/92 (33%), Positives = 44/92 (48%), Gaps = 9/92 (10%)
Query 1 MKLKSIHLKHTGPFQDLHVEFDYAHKPITLILGEQAVGKTTLLKHIFQALSWFPARFKDS 60
MKL+ + +K+ D VEF + I LI+G+ GK++LL I L W P R KD
Sbjct 1 MKLERVTVKNFRSHSDTVVEFK---EGINLIIGQNGSGKSSLLDAILVGLYW-PLRIKDI 56
Query 61 R-----TAGIVTLDQDISFQKTQSKTAISVHF 87
+ G D+ F+K +K I+ F
Sbjct 57 KKDEFTKVGARDTYIDLIFEKDGTKYRITRRF 88
Score = 21.6 bits (44), Expect = 0.58
Identities = 20/94 (21%), Positives = 43/94 (46%), Gaps = 10/94 (11%)
Query 269 KLQLMVCYQDQIIQYQQLSNSLKIWIALIGDLVRRLCLLNPLSLYPCLEGEGIILIDQID 328
K++L V ++ + LS +I + L L L L +SL +++D+
Sbjct 775 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISL---------LILDEPT 825
Query 329 TQLDQMLSREILIRLNQAFPQV-QIIATGNRDEL 361
LD+ R+++ + + ++ Q+I + +EL
Sbjct 826 PYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 859
>Q196W6 Uncharacterized protein 094L [Invertebrate iridescent
virus 3]
Length=829
Score = 36.2 bits (82), Expect = 2e-05
Identities = 32/124 (26%), Positives = 52/124 (42%), Gaps = 23/124 (19%)
Query 244 HLQALKNSLQHIFPD---------LTDFYLEYHPKLQLMVCYQDQIIQYQQLSNSLKIWI 294
HL+ L LQ FPD L + + P++ + Y+ + Y+ LS +
Sbjct 708 HLEIL---LQDFFPDCCGDPIQIQLELCHDKQRPQVSATINYKGNRVDYKSLSTGEYARV 764
Query 295 ALIGDLVRRLCLLNPLSLYPCLEGEGIILIDQIDTQLDQMLSREILIRLNQAFPQVQIIA 354
L DL + L GE II++D+ LDQ LS +I ++ FP I+
Sbjct 765 KLAFDLTFKEIL-----------GETIIMLDECTANLDQDLSTKIFQKIISTFPSKTILV 813
Query 355 TGNR 358
++
Sbjct 814 VAHQ 817
Score = 22.7 bits (47), Expect = 0.25
Identities = 12/30 (40%), Positives = 17/30 (57%), Gaps = 0/30 (0%)
Query 21 FDYAHKPITLILGEQAVGKTTLLKHIFQAL 50
F++A TLI G GK+T+L + AL
Sbjct 16 FNFALDSTTLITGPSGQGKSTILLAVQFAL 45
Score = 18.5 bits (36), Expect = 5.2
Identities = 22/111 (20%), Positives = 44/111 (40%), Gaps = 6/111 (5%)
Query 330 QLDQMLSREILIRLNQAFPQVQIIATGNRDELLEHTTSYQCYKLSHQGIVPIELGQPTKL 389
Q D+ +++ + Q ++A+ DEL Y+ + + I ++ QP+
Sbjct 439 QADRKRLQQLETLMGQINHNEAVMASTPIDELTARLQLYRDRETVRERIRQMQTFQPSAS 498
Query 390 YDEIYSHLFDETSADTGLITSLSSFTTENFDQLLSQIEYLTEDQKAAIIRL 440
+ E T + S +T LL +E L E + A+++L
Sbjct 499 LAAL------EHKIKTNVHFKRKSKSTIALVPLLESVESLRERKCTAVVQL 543
Score = 18.5 bits (36), Expect = 5.2
Identities = 13/55 (24%), Positives = 23/55 (42%), Gaps = 1/55 (2%)
Query 239 QLKTPHLQALKNSLQHIFPDLTDFYLEYHPKLQLMVCYQDQIIQYQQLSNSLKIW 293
+ K LQ + L H DLT + ++ + + Y ++ +YQ L W
Sbjct 606 EAKRAKLQTKLDELNHCPEDLTRHESKLR-EVNVALEYWARVTEYQSYCARLDKW 659
Score = 18.5 bits (36), Expect = 5.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query 68 LDQDIS---FQKT----QSKTAISVHFPAELGVLS 95
LDQD+S FQK SKT + V A G+ +
Sbjct 790 LDQDLSTKIFQKIISTFPSKTILVVAHQAVAGIFN 824
Lambda K H a alpha
0.321 0.135 0.391 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1794056
Database: bc602d1a71005cfb9b54d32de77abd5b.SwissProt.fasta
Posted date: May 30, 2024 8:52 PM
Number of letters in database: 4,800
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
