BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5cfb747da0af574b604064b3432ab41c.SwissProt.fasta
12 sequences; 9,370 total letters
Query= ACIAD0379
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
Q8NFZ0 F-box DNA helicase 1 [Homo sapiens] 165 1e-46
Q9USU3 F-box DNA helicase protein 1 [Schizosaccharomyces pombe (s... 157 2e-44
Q8K2I9 F-box DNA helicase 1 [Mus musculus] 157 4e-44
F1ND48 F-box DNA helicase 1 [Gallus gallus] 154 4e-43
Q9S3Q0 ATP-dependent DNA helicase PcrA [Leuconostoc citreum] 46.6 2e-08
P47486 Probable DNA helicase II homolog [Mycoplasma genitalium (s... 44.7 9e-08
P45612 Probable DNA helicase II homolog [Mycoplasma capricolum su... 43.9 1e-07
P75437 Probable DNA helicase II homolog [Mycoplasma pneumoniae (s... 43.5 2e-07
P75438 Probable DNA helicase MPN_340 [Mycoplasma pneumoniae (stra... 41.2 9e-07
Q0AGF4 Spermidine/putrescine import ATP-binding protein PotA [Nit... 40.0 2e-06
Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe... 40.0 2e-06
Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907... 38.5 7e-06
>Q8NFZ0 F-box DNA helicase 1 [Homo sapiens]
Length=1043
Score = 165 bits (417), Expect = 1e-46
Identities = 155/525 (30%), Positives = 253/525 (48%), Gaps = 74/525 (14%)
Query 27 KVIAYAGTGKTTTLQMISDAMPERRGMYLAFNKAIASEAQQKFHRHVDCRTFHSLAFRSV 86
K++A+AGTGKT+TL ++ + R +Y+ FNK+IA +A++ F +V C+TFHS+A+ +
Sbjct 460 KIMAFAGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHI 519
Query 87 PRGVTDKLRLPRLSPSFMAKDYRLEPITLRRLMGGRYEKYVLMPSRLASLVANTVSYFCS 146
R K +L ++L P + ++ ++ A LV T+ F +
Sbjct 520 GRKYQSKKKL---------NLFKLTPFMVNSVLAEGKGGFI-----RAKLVCKTLENFFA 565
Query 147 TNSQYPAPRHIQAPSWLHPDD----LTQLQQHLYPAIE--------RRWLESIDPQHQAG 194
+ + H+ P W + + + L +E R+ E + HQ
Sbjct 566 SADEELTIDHV--PIWCKNSQGQRVMVEQSEKLNGVLEASRLWDNMRKLGECTEEAHQ-- 621
Query 195 IGHDIYLKLWALSEPNIPA-DYVLFDEAQDADPLMLGILLKQRNTQVIYVGDAHQQIYAW 253
+ HD YLKLW LS+P++ + D + DEAQD P ++ I+L Q + I+VGD HQQIY +
Sbjct 622 MTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQQIYTF 680
Query 254 RGAVNAMQQLPLPE-SRLTTSFRFGESIANVANYLLNGLDET--IPLLGNPDLNSKVVNK 310
RGAVNA+ +P LT SFRFG IA V +L+ L+G N + +
Sbjct 681 RGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGG---NHQSGIR 737
Query 311 PHTKQRDAILCRTNARAMELLLAGLVHGD---KVSLQADHNK--LNRFVDAASLL----- 360
K + A+L RTNA + + + G+ ++ L L+R +D LL
Sbjct 738 GDAKGQVALLSRTNANVFDEAVR-VTEGEFPSRIHLIGGIKSFGLDRIIDIWILLQPEEE 796
Query 361 --KQGKRVTDVPELAWFN--SWHDVHEYCETNDGSDIKPLVKLVDDHG--TAPLKHALSK 414
KQ + D W + + Y + +++ + +V+ + L + K
Sbjct 797 RRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRIEK 856
Query 415 --ITPIEQADYVISTAHKAKGLEWNRVHLEDDY------QFKINQLEH----KISDEELR 462
I ++ A+Y++ T HKAKGLE++ VH+ DD+ + + QL H S++E
Sbjct 857 CHIEDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLPQLPHFRVESFSEDEWN 916
Query 463 LLYVACTRAKVSL----NIHHIYDLVQQLKLRAPQS---LRTSVV 500
LLYVA TRAK L ++ +I L + L+A + L+T VV
Sbjct 917 LLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGVV 961
>Q9USU3 F-box DNA helicase protein 1 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=878
Score = 157 bits (398), Expect = 2e-44
Identities = 154/505 (30%), Positives = 250/505 (50%), Gaps = 73/505 (14%)
Query 23 GESFKVIAYAGTGKTTTLQMISDAMPERRGMYLAFNKAIASEAQQKFHRHVDCRTFHSLA 82
GE KV A+AGTGKT L + + P+ + +Y+AFNKA +A+ +F +V C T H LA
Sbjct 288 GEVLKVKAFAGTGKTKALLEFAKSRPKDKILYVAFNKAAKEDAELRFPFNVKCSTMHGLA 347
Query 83 FRSV-PRGVTDKLRLPR-LSPSFMAKDYRLE---PITLRRLMGGRYEKYVLMPSRLASLV 137
+ ++ + + +L R LS S +A L+ P R+ G S +AS +
Sbjct 348 YGAILAQADLPQAKLERQLSNSTIASLLSLQVAFPKANRKNNPG-----TPSASLVASHI 402
Query 138 ANTVSYFCSTNSQYPAPRHIQAPSWLHPDDLTQL-QQHLYPAIERRWLESIDPQH-QAGI 195
T++ F + RHI S ++T+L ++ L ++ W ++ ++ A +
Sbjct 403 MFTLNRFMHSTDWQLGFRHISKRSL----EVTKLSKEKLLAYTKKLWSLIVNFEYTHAPL 458
Query 196 GHDIYLKLWALSE-PNI--PADYVLFDEAQDADPLMLGILLKQRNTQVIYVGDAHQQIYA 252
D Y+KL L E PNI DY+LFDEAQD P M+ ++ +Q++ +++ VGDAHQ IY
Sbjct 459 IPDAYMKLLHLYEFPNIFSKYDYILFDEAQDFTPCMVDLIYRQKHARIVIVGDAHQCIYG 518
Query 253 WRGA-VNAMQQLPLPESR---LTTSFRFGESIANVANYLLNGLDETIPLLG--------- 299
+RGA A + P ++ LT SFRFG S+A AN+LL+ E + L G
Sbjct 519 FRGANACAFNENLYPSTKQLCLTKSFRFGNSVAKYANFLLSLKGENVKLKGVQNDHAYWS 578
Query 300 ---NPDLNSKVVN-KPHTKQRDAILCRTNARAMELLLAGLVHGDKVS-------LQADHN 348
NP+ S PHT I+ RTN EL+L + + L +
Sbjct 579 SASNPNNVSGAFRFFPHT-----IIFRTN---KELILQSIRLSVSLPKEIPIAILGSMRK 630
Query 349 KLNRFVDAASLLKQGKRVTDVPELAWFNSW--HDVHEYCETNDGSDIKPLVKLVDDHGTA 406
K + + + S L G+R + P+L F+SW +VH + +++ + + D+ +
Sbjct 631 KAFQLLRSGSELAHGQRPSH-PKLKDFSSWGEFEVHVKNSAEEDAELALVYDMADELFS- 688
Query 407 PLKHALSKITPIEQA----------DYVISTAHKAKGLEWNRVHLEDDYQFKINQL---- 452
+ LS++ E+ +++TAH++KGLEW+ V L +D++ K + +
Sbjct 689 --ESFLSRLDNCEKRLMDSKDDGDNGIILATAHQSKGLEWDNVQLGNDFRPKFDSVSFSR 746
Query 453 --EHKISDEELRLLYVACTRAKVSL 475
+ EE+ +LYVA TRAK L
Sbjct 747 IGSSRYLQEEINILYVALTRAKKRL 771
>Q8K2I9 F-box DNA helicase 1 [Mus musculus]
Length=1042
Score = 157 bits (397), Expect = 4e-44
Identities = 161/529 (30%), Positives = 258/529 (49%), Gaps = 82/529 (16%)
Query 27 KVIAYAGTGKTTTLQMISDAMPERRGMYLAFNKAIASEAQQKFHRHVDCRTFHSLAFRSV 86
K++A+AGTGKT+TL ++ + R +Y+ FNK+IA +A+ F +V C+TFHS+A+ V
Sbjct 459 KIMAFAGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAELVFPSNVICKTFHSMAYSHV 518
Query 87 PRG--VTDKLRLPRLSPSFMAKDYRLEPITLRRLMGGRYEKYVLMPSRLASLVANTVSYF 144
R + KL L +L+P FM E GG A LV T+ F
Sbjct 519 GRKYQLKKKLNLFKLTP-FMVNSVLAEG------KGGFIR---------AKLVCKTLENF 562
Query 145 CSTNSQYPAPRHIQAPSWLHPDD----LTQLQQHLYPAIE--------RRWLESIDPQHQ 192
++ + H+ P W + + + L +E R+ E + +Q
Sbjct 563 FASADEELTIDHV--PIWCKNSHGQRVMVEQSEKLNGVLEASRLWDNMRKLGECKEEAYQ 620
Query 193 AGIGHDIYLKLWALSEPNIPA-DYVLFDEAQDADPLMLGILLKQRNTQVIYVGDAHQQIY 251
+ HD YLKLW LS+P + + D + DEAQD P ++ I+L Q + I+VGD HQQIY
Sbjct 621 --MTHDGYLKLWQLSKPLLASFDAIFVDEAQDCTPAIMNIVLSQPCGK-IFVGDPHQQIY 677
Query 252 AWRGAVNAMQQLPLPE-SRLTTSFRFGESIANVANYLLNGLDET--IPLLGNPDLNSKVV 308
+RGAVNA+ +P LT SFRFG IA V +L+ L+G N +
Sbjct 678 TFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGG---NHQSG 734
Query 309 NKPHTKQRDAILCRTNARAMELLLAGLVHGD---KVSLQADHNK--LNRFVDAASLL--K 361
+ K + A+L RTNA + + + G+ ++ L L+R +D +LL +
Sbjct 735 IRGDIKGQVALLSRTNANVFDEAVR-VTEGESPARIHLIGGIKSFGLDRIIDIWTLLQPE 793
Query 362 QGKRVTD-VPELAWFNSWHDVHE--------YCETNDGSDIKPLVKLVDDHG--TAPLKH 410
+ +R D + + + W VH+ Y + +++ + +V+ + L
Sbjct 794 EERRKRDLIIKDRFIRRW--VHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVE 851
Query 411 ALSK--ITPIEQADYVISTAHKAKGLEWNRVHLEDDY------QFKINQLEH----KISD 458
+ + I ++ A+Y++ T HKAKGLE++ VH+ DD+ + + QL H S+
Sbjct 852 RIERCHIDDLDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLAQLPHFRVESFSE 911
Query 459 EELRLLYVACTRAKVSL----NIHHIYDLVQQLKLRAPQS---LRTSVV 500
+E LLYVA TRAK L ++ +I L + L+A + L+T VV
Sbjct 912 DEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGVV 960
>F1ND48 F-box DNA helicase 1 [Gallus gallus]
Length=1012
Score = 154 bits (389), Expect = 4e-43
Identities = 155/549 (28%), Positives = 247/549 (45%), Gaps = 92/549 (17%)
Query 2 SSIEKPKATYEQATAIDNA-RLGESFKVIAYAGTGKTTTLQMISDAMPERRGMYLAFNKA 60
SS+ + K T+EQ +++ G+ K++A+AGTGKT+TL ++ + +Y+ FNKA
Sbjct 419 SSLSEVKLTHEQQRILNHKIERGQIVKIMAFAGTGKTSTLVKYAEKFADLSFLYVTFNKA 478
Query 61 IASEAQQKFHRHVDCRTFHSLAFRSV-----PRGVTDKLRLPRLSPSFMAKDYRLEPITL 115
+A + F R+V C+TFHSLAF SV +G + +L S SF+ ++ + I +
Sbjct 479 VAERGRLVFPRNVTCKTFHSLAFGSVGKLYKEKGKLNFSKLSAYSVSFLIQNREGQSIFI 538
Query 116 RRLMGGRYEKYVLMPSRLASLVANTVSYFCSTNSQYPAPRHIQAPSWLHPDDLTQLQQHL 175
R V+ T+ F +++ + H P W T ++ L
Sbjct 539 R-----------------GKTVSQTLENFFASSDEEICEEH--TPVWFKN---THGERKL 576
Query 176 YPAIERR---------WLE----SIDPQHQAGIGHDIYLKLWALSEPNIPA-DYVLFDEA 221
E+R W D + + I D YLKLW LS+P + D + DEA
Sbjct 577 VTPEEKRINVEEAKEIWRNMKKLDGDVERKYKITCDGYLKLWQLSKPQLSGYDAIFVDEA 636
Query 222 QDADPLMLGILLKQRNTQVIYVGDAHQQIYAWRGAVNAMQQLPLPE-SRLTTSFRFGESI 280
QD P ++ I+L Q VI VGD HQQIY++RGAVN + +P LT SFRFG I
Sbjct 637 QDCTPAIVDIVLSQ-TCGVILVGDPHQQIYSFRGAVNTLYTVPHTHIYYLTQSFRFGPEI 695
Query 281 ANVANYLLN---GLDETIPLLGNPD------LNSKVV---NKPHTKQRDAILCRTNARAM 328
A V +L+ G+ + GN + + K+ T DA R +
Sbjct 696 AYVGATILDVCKGIRNKTLVGGNQEGDVRGSMEGKITMLSRSNFTVFEDAAKLAGRERQI 755
Query 329 EL-LLAGLVHGD--------KVSLQADHNKLNRFVDAASLLKQGKRVTDVPELAWFNSWH 379
++ ++ GLV K+S AD + V S +K+ + +
Sbjct 756 KIHIIGGLVRFGLSKIYDIWKLSQPADEREKANLVINDSFIKRWEE---------NEGFI 806
Query 380 DVHEYCETNDGSDIKPLVKLVDDH----GTAPLKHALSKITPIEQADYVISTAHKAKGLE 435
+ +Y D +++ +++V+ K S + ADY+I T H+AKGLE
Sbjct 807 GLKDYATRVDDKELEMKIRIVEKFKERIPELVQKIESSHVLQEAMADYLIGTVHQAKGLE 866
Query 436 WNRVHLEDDY----------QFKINQLEHKISDEELRLLYVACTRAK----VSLNIHHIY 481
++ V + DD+ Q + + ++E LLYVA TRAK +S ++ H+
Sbjct 867 FDTVLIADDFVDVPCARDNNQRRPQFIIGMCPEDEWNLLYVAVTRAKKCLLMSQSLEHLL 926
Query 482 DLVQQLKLR 490
L + LR
Sbjct 927 ALAGEHFLR 935
>Q9S3Q0 ATP-dependent DNA helicase PcrA [Leuconostoc citreum]
Length=749
Score = 46.6 bits (109), Expect = 2e-08
Identities = 31/91 (34%), Positives = 48/91 (53%), Gaps = 8/91 (9%)
Query 214 DYVLFDEAQDADPLMLGI--LLKQRNTQVIYVGDAHQQIYAWRGA-----VNAMQQLPLP 266
+Y+ DE QD + I LL QR+ + VGDA Q IY WRGA +N + P
Sbjct 217 EYLHVDEYQDTNDAQYTIVNLLAQRSKNLAVVGDADQSIYGWRGANMNNILNFEKDYPNA 276
Query 267 ES-RLTTSFRFGESIANVANYLLNGLDETIP 296
+ L ++R ++I + AN ++N +E +P
Sbjct 277 HTVMLEQNYRSTQNILDAANAVINHNNERVP 307
Score = 34.3 bits (77), Expect = 1e-04
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query 383 EYCETNDGSDIKPLVKLVDDHGTAPLKHALSKITPIEQADYVIS--TAHKAKGLEWNRVH 440
E+ + D + + + D GT L +S + E+ D ++ T H AKGLE+ V
Sbjct 521 EFDDKYQPEDPESIDPVTDFLGTTAL---MSDLDDFEEGDGAVTLMTLHAAKGLEFPVVF 577
Query 441 L----EDDYQFKINQLEHKISDEELRLLYVACTRAKVSL 475
L E + ++ + +EE RL YV TRA L
Sbjct 578 LIGLKEGIFPLSRAMMDEDLLEEERRLAYVGITRAMKKL 616
>P47486 Probable DNA helicase II homolog [Mycoplasma genitalium
(strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)]
Length=703
Score = 44.7 bits (104), Expect = 9e-08
Identities = 27/84 (32%), Positives = 45/84 (54%), Gaps = 10/84 (12%)
Query 215 YVLFDEAQDADPLMLGIL--LKQRNTQVIYVGDAHQQIYAWRGAVNAM-----QQLPLPE 267
++L DE QD + + ++ L +N + VGD +Q IY WRGAVN + +P+
Sbjct 215 HILVDEFQDTNQIQYELIKMLVTKNKNLFLVGDNNQMIYRWRGAVNGIITALKHDFNVPK 274
Query 268 SR---LTTSFRFGESIANVANYLL 288
S + ++R ++I VAN +L
Sbjct 275 SNEFFINQNYRCDQNILAVANQIL 298
Score = 33.1 bits (74), Expect = 3e-04
Identities = 21/52 (40%), Positives = 30/52 (58%), Gaps = 6/52 (12%)
Query 427 TAHKAKGLEWNRVHL----EDDYQFKI--NQLEHKISDEELRLLYVACTRAK 472
T H AKGLE+ V + + D+ + NQ + + +EL+L YVA TRAK
Sbjct 536 TVHAAKGLEFEAVFIYGMNQGDFPLFLSQNQNDEQHLIDELKLFYVAITRAK 587
>P45612 Probable DNA helicase II homolog [Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 / NCTC
10154)]
Length=722
Score = 43.9 bits (102), Expect = 1e-07
Identities = 46/177 (26%), Positives = 74/177 (42%), Gaps = 34/177 (19%)
Query 214 DYVLFDEAQDADPLMLGIL--LKQRNTQVIYVGDAHQQIYAWRGAVNAMQQLPLPESRLT 271
DYVL DE QD + L ++ L + VGD Q IY+WRGA +L
Sbjct 220 DYVLVDEFQDTNELQFSLIKFLTINTNHLTVVGDPDQTIYSWRGA------------KLD 267
Query 272 TSFRFGESIANVANYLLN-GLDETIPLLGNPDLNSKVVNKPHTKQRDAILCRTNARAMEL 330
F ++ +N + +LN T +L D+++ + ++ I TN ++
Sbjct 268 IILNFNKTYSNAISIVLNQNYRSTKQIL---DISNSFIKNNKFREHKEIF--TNNKS--- 319
Query 331 LLAGLVHGDKVSLQADHNKLNRFVDAAS----LLKQGKRVTDVPELAWFNSWHDVHE 383
G KV L+ ++K + +S L+KQG D+ L N+W E
Sbjct 320 -------GKKVVLKECNSKTSEASYVSSKIKELVKQGYHYKDIFILYRMNAWSQEFE 369
Score = 36.6 bits (83), Expect = 3e-05
Identities = 30/86 (35%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query 413 SKITPIEQADYV-ISTAHKAKGLEWNRVHL----EDDYQFKINQLEHKISDEELRLLYVA 467
S I EQ D V + T H AKGLE V + + + +I++ +EE R LYVA
Sbjct 544 SDIDEAEQIDKVSLLTVHAAKGLENKVVFITGLNQGIFPSRISETSINELEEERRALYVA 603
Query 468 CTRAKVSLNIHHI---YDLVQQLKLR 490
TRAK L + ++ Y + Q +L+
Sbjct 604 LTRAKDELFLTYVKGDYSHIMQSELK 629
Score = 20.0 bits (40), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (7%)
Query 12 EQATAIDNARLGESFKVIAYAGTGKTTTL 40
+Q A+ N + + ++IA AG+GKT +
Sbjct 13 QQLAAVLN--IDKPVRIIAGAGSGKTRVI 39
Score = 19.2 bits (38), Expect = 6.4
Identities = 7/18 (39%), Positives = 12/18 (67%), Gaps = 0/18 (0%)
Query 43 ISDAMPERRGMYLAFNKA 60
I++ ERR +Y+A +A
Sbjct 590 INELEEERRALYVALTRA 607
>P75437 Probable DNA helicase II homolog [Mycoplasma pneumoniae
(strain ATCC 29342 / M129 / Subtype 1)]
Length=715
Score = 43.5 bits (101), Expect = 2e-07
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (12%)
Query 215 YVLFDEAQDADPLMLGIL--LKQRNTQVIYVGDAHQQIYAWRGAVNAM--------QQLP 264
Y+L DE QD + + ++ L + + VGD +Q IY WRGAV+ + + P
Sbjct 223 YILGDEFQDTNQIQYELIKMLASHHQNLFLVGDNNQMIYRWRGAVSDIIDSLKSDFKVRP 282
Query 265 LPESRLTTSFRFGESIANVANYLL 288
E +T ++R ++I VAN +L
Sbjct 283 ENEFYITQNYRCDQNILTVANSIL 306
Score = 37.7 bits (86), Expect = 1e-05
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 12/75 (16%)
Query 419 EQADYVIS--TAHKAKGLEWNRVHL----EDDYQFK----INQLEHKISDEELRLLYVAC 468
+ D VI+ T H AKGLE+ V + +D++ K I L+ ++ +ELRL YVA
Sbjct 538 QSKDNVINLITVHSAKGLEFEAVFIYGINQDNFPLKSKNQIIDLQREL--DELRLFYVAL 595
Query 469 TRAKVSLNIHHIYDL 483
TRAK L + +Y +
Sbjct 596 TRAKKYLFLLSVYQM 610
Score = 29.6 bits (65), Expect = 0.004
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 14/71 (20%)
Query 28 VIAYAGTGKTTTL-QMISDAMPERRG-----MYLAFNKAIASEAQQ--------KFHRHV 73
V + AGTGKTT + Q + ++R + L + + ASE +Q K+H+ V
Sbjct 26 VYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAASEMKQRILELLPEKYHKDV 85
Query 74 DCRTFHSLAFR 84
+ TFHS R
Sbjct 86 NIYTFHSFCSR 96
>P75438 Probable DNA helicase MPN_340 [Mycoplasma pneumoniae (strain
ATCC 29342 / M129 / Subtype 1)]
Length=529
Score = 41.2 bits (95), Expect = 9e-07
Identities = 27/85 (32%), Positives = 44/85 (52%), Gaps = 8/85 (9%)
Query 215 YVLFDEAQDADPLMLGI--LLKQRNTQVIYVGDAHQQIYAWRGAVNAMQQL------PLP 266
Y+L DE QD + + LL + + VGD++Q IY WRGAV + +L +
Sbjct 215 YILVDEFQDTNLAQYELVKLLATTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQAVK 274
Query 267 ESRLTTSFRFGESIANVANYLLNGL 291
E T ++R +++ VAN +L +
Sbjct 275 EFYTTQNYRSIQAVLAVANDVLTAI 299
Score = 32.3 bits (72), Expect = 5e-04
Identities = 29/84 (35%), Positives = 41/84 (49%), Gaps = 13/84 (15%)
Query 427 TAHKAKGLEWNRVHLEDDYQFKINQLEHKISD-----EELRLLYVACTRAK-----VSLN 476
T H AKGLE+ V + + L SD EE++L YVA TRAK VS++
Sbjct 385 TIHAAKGLEFEAVFVYGLVERAFPSLHWDGSDKHKLLEEMKLFYVAITRAKQFLFLVSVS 444
Query 477 IHHI---YDLVQQLKLRAPQSLRT 497
+ Y+ + LKL + L+T
Sbjct 445 VESFNAYYEPSRFLKLIEKEHLQT 468
Score = 23.1 bits (48), Expect = 0.40
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 14/71 (20%)
Query 28 VIAYAGTGKTTTLQMISDAMPERRG------MYLAFNKAIASEAQQKFHRHVDCR----- 76
V + AGTGKTT + + +G + F ASE +Q+ + + +
Sbjct 21 VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEMRQRIIKLIPQKSLQDL 80
Query 77 ---TFHSLAFR 84
TFHS A R
Sbjct 81 HIYTFHSFANR 91
>Q0AGF4 Spermidine/putrescine import ATP-binding protein PotA
[Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)]
Length=363
Score = 40.0 bits (92), Expect = 2e-06
Identities = 31/109 (28%), Positives = 53/109 (49%), Gaps = 6/109 (6%)
Query 15 TAIDNARL----GESFKVIAYAGTGKTTTLQMISDAMPERRGMYLAFNKAIASEAQQKFH 70
TA+DN L GE F ++ +G GKTT L+MI+ G L + IA+ +K
Sbjct 17 TAVDNVSLSIQAGEFFTLLGPSGCGKTTLLRMIAGFDVPDSGQILLDGQDIANTPPEKRP 76
Query 71 RHVDCRTFHSLAFRSVPRGVTDKLRLPRLSPSFMAK--DYRLEPITLRR 117
H +++ +V V L++ +++P+ + K + LE + L R
Sbjct 77 IHTVFQSYALFPHMTVADNVAFPLKMSKVAPAEIKKRMEKALEEVQLSR 125
>Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=887
Score = 40.0 bits (92), Expect = 2e-06
Identities = 26/57 (46%), Positives = 28/57 (49%), Gaps = 0/57 (0%)
Query 419 EQADYVISTAHKAKGLEWNRVHLEDDYQFKINQLEHKISDEELRLLYVACTRAKVSL 475
E IST H AKGLEW V L + I DEE RLLYV TRA+ L
Sbjct 583 ESQKVTISTLHAAKGLEWPVVFLPCLCENIIPHSRSDDLDEERRLLYVGATRAQALL 639
Score = 31.2 bits (69), Expect = 0.001
Identities = 16/44 (36%), Positives = 24/44 (55%), Gaps = 2/44 (5%)
Query 215 YVLFDEAQDADPLMLGI--LLKQRNTQVIYVGDAHQQIYAWRGA 256
++L DE QD + + LL +N+ + VGD Q IY +R A
Sbjct 234 HILIDEFQDTSKIQYFLVKLLALQNSDITIVGDPDQSIYGFRSA 277
>Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd)]
Length=727
Score = 38.5 bits (88), Expect = 7e-06
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (9%)
Query 215 YVLFDEAQDADPLMLGIL--LKQRNTQVIYVGDAHQQIYAWRGA-----VNAMQQLPLPE 267
++L DE QD + + + L + QV+ VGD Q IY WRGA ++
Sbjct 221 HILVDEFQDTNKIQYKWIKILAGKTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDFKAET 280
Query 268 SRLTTSFRFGESIANVANYLL 288
RL ++R +I N AN L+
Sbjct 281 IRLEQNYRSTANILNSANELI 301
Score = 31.6 bits (70), Expect = 0.001
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query 427 TAHKAKGLEWNRVHL---EDDYQFKINQLEHKIS-DEELRLLYVACTRAKVSLNIHH 479
T H AKGLE+ RV + E+ E +EE RL YV TRAK L I +
Sbjct 562 TLHSAKGLEFPRVFMVGVEEGLFPSFRSFEEPGRLEEERRLAYVGITRAKKKLTISY 618
Lambda K H a alpha
0.321 0.135 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3884660
Database: 5cfb747da0af574b604064b3432ab41c.SwissProt.fasta
Posted date: May 19, 2024 7:46 PM
Number of letters in database: 9,370
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
