BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 8891b228bab73d7da12c15a35c880620.SwissProt.fasta
21 sequences; 5,677 total letters
Query= ACIAD0418
Length=263
Score E
Sequences producing significant alignments: (Bits) Value
Q6FEZ7 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baylyi (s... 520 0.0
B0VQB5 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 412 1e-150
A3M9B2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 411 3e-150
B2HZQ2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 409 2e-149
B0V707 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 408 3e-149
B7IA68 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 408 3e-149
B7GVX2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii... 407 1e-148
Q0VTD6 Shikimate dehydrogenase (NADP(+)) [Alcanivorax borkumensis... 233 7e-80
Q1QEG9 Shikimate dehydrogenase (NADP(+)) [Psychrobacter cryohalol... 233 1e-79
Q4FVE5 Shikimate dehydrogenase (NADP(+)) [Psychrobacter arcticus ... 231 8e-79
Q3SFZ9 Shikimate dehydrogenase (NADP(+)) [Thiobacillus denitrific... 226 3e-77
P15770 Shikimate dehydrogenase (NADP(+)) [Escherichia coli (strai... 212 9e-72
P43876 Shikimate dehydrogenase (NADP(+)) [Haemophilus influenzae ... 184 9e-61
Q44607 Shikimate dehydrogenase (NADP(+)) [Buchnera aphidicola sub... 166 1e-53
P46240 Shikimate dehydrogenase (NADP(+)) [Buchnera aphidicola sub... 150 1e-47
Q5HNV1 Shikimate dehydrogenase (NADP(+)) [Staphylococcus epidermi... 132 2e-40
Q5SJF8 Shikimate dehydrogenase (NADP(+)) [Thermus thermophilus (s... 123 2e-37
O67049 Shikimate dehydrogenase (NADP(+)) [Aquifex aeolicus (strai... 120 3e-36
Q56S04 Shikimate dehydrogenase (NADP(+)) [Helicobacter pylori] 119 1e-35
Q58484 Shikimate dehydrogenase (NADP(+)) [Methanocaldococcus jann... 118 3e-35
P0A6D5 Quinate/shikimate dehydrogenase [Escherichia coli (strain ... 99.8 4e-28
>Q6FEZ7 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=262
Score = 520 bits (1340), Expect = 0.0
Identities = 262/262 (100%), Positives = 262/262 (100%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT
Sbjct 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL
Sbjct 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML
Sbjct 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAFSIWHGVKPNLTDFL
Sbjct 241 VGQAIEAFSIWHGVKPNLTDFL 262
>B0VQB5 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain SDF)]
Length=262
Score = 412 bits (1059), Expect = 1e-150
Identities = 205/262 (78%), Positives = 232/262 (89%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C+ LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCNVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGAKKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD+VINATSASLSGDAL LPE L+FKYAYEMAYGKPSSFLDQAK R VP EGFGML
Sbjct 181 EGDFDIVINATSASLSGDALQLPEKLKFKYAYEMAYGKPSSFLDQAKQRNVPYAEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAFSIW+GV+P L DFL
Sbjct 241 VGQAIEAFSIWNGVRPQLKDFL 262
>A3M9B2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755
/ 5377)]
Length=262
Score = 411 bits (1056), Expect = 3e-150
Identities = 205/262 (78%), Positives = 231/262 (88%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCDVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGTQKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD+VINATSASLSGDAL LPE LQFKYAYEMAYGKPSSFLDQAK R VP +EGFGML
Sbjct 181 EGDFDIVINATSASLSGDALQLPEKLQFKYAYEMAYGKPSSFLDQAKQRNVPYSEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAF IW+GV+P L DFL
Sbjct 241 VGQAIEAFYIWNGVRPQLKDFL 262
>B2HZQ2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain ACICU)]
Length=262
Score = 409 bits (1050), Expect = 2e-149
Identities = 204/262 (78%), Positives = 230/262 (88%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAKGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCDVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGAKKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD+VINATSASLSGDAL LPE L+FKYAYEMAYGKPSSFLDQAK R VP EGFGML
Sbjct 181 EGDFDIVINATSASLSGDALQLPEKLKFKYAYEMAYGKPSSFLDQAKQRNVPYAEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAFSIW+ V+P L DFL
Sbjct 241 VGQAIEAFSIWNNVRPQLKDFL 262
>B0V707 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain AYE)]
Length=262
Score = 408 bits (1049), Expect = 3e-149
Identities = 203/262 (77%), Positives = 229/262 (87%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCDVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGAQKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD+VINATS SLSGDAL LPE LQFKYAYEMAYGKPSSF+DQAK R VP EGFGML
Sbjct 181 EGDFDIVINATSTSLSGDALQLPEKLQFKYAYEMAYGKPSSFIDQAKQRNVPYAEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAF IW+GV+P L DFL
Sbjct 241 VGQAIEAFYIWNGVRPQLKDFL 262
>B7IA68 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain AB0057)]
Length=262
Score = 408 bits (1049), Expect = 3e-149
Identities = 203/262 (77%), Positives = 229/262 (87%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCDVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGAQKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD+VINATS SLSGDAL LPE LQFKYAYEMAYGKPSSF+DQAK R VP EGFGML
Sbjct 181 EGDFDIVINATSTSLSGDALQLPEKLQFKYAYEMAYGKPSSFIDQAKQRNVPYAEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAF IW+GV+P L DFL
Sbjct 241 VGQAIEAFYIWNGVRPQLKDFL 262
>B7GVX2 Shikimate dehydrogenase (NADP(+)) [Acinetobacter baumannii
(strain AB307-0294)]
Length=262
Score = 407 bits (1046), Expect = 1e-148
Identities = 202/262 (77%), Positives = 229/262 (87%), Gaps = 0/262 (0%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MTKQFAVIGNPIEQSRSPELHHAFAEK G++LNY KRLAPLDGFE+++++FF +GG G+N
Sbjct 1 MTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGT 120
VTVPFKEQAFA+C LTERA+IAKAVNTLW+ENG+LHGDNTDGQGLV AIQAL W L+ T
Sbjct 61 VTVPFKEQAFALCDVLTERAQIAKAVNTLWMENGKLHGDNTDGQGLVAAIQALEWNLENT 120
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
ILILGAGGATRGVIYPLVQAG +IVIANRT RAEQLV DL +V +A L+ ++L+ L
Sbjct 121 TILILGAGGATRGVIYPLVQAGAQKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDL 180
Query 181 HGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSFLDQAKARGVPTTEGFGML 240
G+FD++INATS SLSGDAL LPE LQFKYAYEMAYGKPSSF+DQAK R VP EGFGML
Sbjct 181 EGDFDIMINATSTSLSGDALQLPEKLQFKYAYEMAYGKPSSFIDQAKQRNVPYAEGFGML 240
Query 241 VGQAIEAFSIWHGVKPNLTDFL 262
VGQAIEAF IW+GV+P L DFL
Sbjct 241 VGQAIEAFYIWNGVRPQLKDFL 262
>Q0VTD6 Shikimate dehydrogenase (NADP(+)) [Alcanivorax borkumensis
(strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)]
Length=278
Score = 233 bits (594), Expect = 7e-80
Identities = 133/261 (51%), Positives = 166/261 (64%), Gaps = 6/261 (2%)
Query 2 TKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINV 61
T + V GNP+ SRSPE+HHAFA + + Y KR APLD F V+ F + GGLG NV
Sbjct 10 TGLYCVFGNPVSHSRSPEIHHAFAAQHSDPVQYEKREAPLDDFAGAVQAFREAGGLGANV 69
Query 62 TVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLV-DAIQALNWPLQGT 120
TVPFKEQAFA+C +TERA A AVNTLW + QLHGDNTDG GLV D W ++
Sbjct 70 TVPFKEQAFALCDAITERADQAGAVNTLWWDGDQLHGDNTDGAGLVKDIRNNQGWTIRKK 129
Query 121 RILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQL 180
R+LILGAGGA RGV+ P++ T + IANRT+++AE L ++ L LD L
Sbjct 130 RVLILGAGGAVRGVLGPILAQEPTLLRIANRTKEKAEALAGNVMKGEGPPVLG-GGLDNL 188
Query 181 HGNFDLVINATSASLSGDALVLPETL--QFKYAYEMAYG-KPSSFLDQAKARG-VPTTEG 236
G FDLVINA SA L G+ LP+ L + AY+M YG +P+ F+ A+ +G T +G
Sbjct 189 MGQFDLVINAISAGLHGEMPALPDGLLAEGAVAYDMVYGSEPTPFMRWAEQQGAAATADG 248
Query 237 FGMLVGQAIEAFSIWHGVKPN 257
GMLV QA EAF IW G +PN
Sbjct 249 LGMLVEQAAEAFEIWRGWRPN 269
>Q1QEG9 Shikimate dehydrogenase (NADP(+)) [Psychrobacter cryohalolentis
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 / K5)]
Length=288
Score = 233 bits (594), Expect = 1e-79
Identities = 123/271 (45%), Positives = 171/271 (63%), Gaps = 18/271 (7%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDG--FEANVKTFFDQGGLG 58
MT+ F VIGNPI S+SPE+H F + G+++ Y ++ P D F A ++ FF GG+G
Sbjct 1 MTQHFIVIGNPIAHSKSPEIHTLFGTQAGLDICYQRQYCPDDAASFTAVIEAFFHGGGVG 60
Query 59 INVTVPFKEQAFAMCHQ---LTERAKIAKAVNTLWIENG----------QLHGDNTDGQG 105
NVTVPFK+ A+ C L+E AK+A AVNTL + L GDNTDGQG
Sbjct 61 ANVTVPFKQIAYECCAARGGLSEHAKVAGAVNTLLLNKALLAKGVPPVEALFGDNTDGQG 120
Query 106 LVDAIQALNWPLQGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAG 165
LV+ +Q L WPL G R+ I+GAGGA RGV+ PL++AG+ + IANRT +AE LV +L+
Sbjct 121 LVNHMQRLGWPLNGARVAIIGAGGAARGVVLPLIEAGIETLSIANRTVSKAEILVDELST 180
Query 166 S---VSEATLRVMTLDQLHGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSF 222
+ +++ T++ L G+FD++INATS LSG+ L L + L +YAY+M YG+ F
Sbjct 181 ASEKINQHTIQTYATADLSGDFDIIINATSIGLSGETLPLTDKLNCQYAYDMMYGRELPF 240
Query 223 LDQAKARGVPTTEGFGMLVGQAIEAFSIWHG 253
L RG T++G+GML+GQA +F W G
Sbjct 241 LQHFSIRGAQTSDGYGMLIGQAALSFERWTG 271
>Q4FVE5 Shikimate dehydrogenase (NADP(+)) [Psychrobacter arcticus
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=288
Score = 231 bits (588), Expect = 8e-79
Identities = 123/271 (45%), Positives = 168/271 (62%), Gaps = 18/271 (7%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLD--GFEANVKTFFDQGGLG 58
MT+ F VIGNPI S+SPE+H F G+++ Y + P D F A ++ FF GG+G
Sbjct 1 MTQHFIVIGNPIAHSKSPEIHTLFGAHAGLDICYQCQYCPDDPASFTAVIEAFFHGGGVG 60
Query 59 INVTVPFKEQAFAMCHQ---LTERAKIAKAVNTLWIENG----------QLHGDNTDGQG 105
NVTVPFK+ A+ C L+E AKIA AVNTL + L+GDNTDGQG
Sbjct 61 ANVTVPFKQVAYECCAARGGLSEHAKIAGAVNTLSLNQALLASGVSRAEALYGDNTDGQG 120
Query 106 LVDAIQALNWPLQGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAG 165
LV+ +Q L WPL G RI I+GAGGA RGV+ PL++AG+ + IANRT +A +LV +L+
Sbjct 121 LVNHMQRLGWPLNGARIAIIGAGGAARGVVLPLIEAGIEALTIANRTLSKATELVNELST 180
Query 166 S---VSEATLRVMTLDQLHGNFDLVINATSASLSGDALVLPETLQFKYAYEMAYGKPSSF 222
+ + ++ L G+FD+++NATS LSG+ L L + L +YAY+M YG+ F
Sbjct 181 ASVVIHNQQIQTCCTADLSGDFDIIVNATSIGLSGETLPLADELNCQYAYDMMYGRELPF 240
Query 223 LDQAKARGVPTTEGFGMLVGQAIEAFSIWHG 253
L ARG T++G+GML+GQA +F W G
Sbjct 241 LQHFAARGAQTSDGYGMLIGQAALSFECWTG 271
>Q3SFZ9 Shikimate dehydrogenase (NADP(+)) [Thiobacillus denitrificans
(strain ATCC 25259)]
Length=265
Score = 226 bits (576), Expect = 3e-77
Identities = 128/260 (49%), Positives = 167/260 (64%), Gaps = 8/260 (3%)
Query 1 MTKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGIN 60
MT ++AV G+PI S+SP++H AFA + G ++ Y LAPL+GF ++ F QGG G N
Sbjct 1 MTDRYAVFGHPIAHSKSPQIHAAFARQTGQDMCYEAILAPLEGFTESIARFAAQGGRGAN 60
Query 61 VTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLV-DAIQALNWPLQG 119
VTVPFKE+AF + +LT RA+ A AVNTL + + GDNTDG GLV D L PL
Sbjct 61 VTVPFKEEAFRLADRLTPRAERAGAVNTLMFDADGILGDNTDGTGLVADLTGNLKRPLAT 120
Query 120 TRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQ 179
RIL++GAGGA RGVI PL++ E+VIANRT RAEQL + + + LR D
Sbjct 121 RRILLVGAGGAARGVIAPLLEQAPAELVIANRTVSRAEQLAE-----LFDGRLRACGFDA 175
Query 180 LHGNFDLVINATSASLSGDALVLPETL--QFKYAYEMAYGKPSSFLDQAKARGVPTTEGF 237
L FD+VINAT+ASL+G+ LP + AY+M YG+ + FL A+A G T +G
Sbjct 176 LDTPFDVVINATAASLAGELPPLPPQVFGTGALAYDMMYGRDTPFLAFARAHGADTADGL 235
Query 238 GMLVGQAIEAFSIWHGVKPN 257
GMLV QA EAF +W GV+P+
Sbjct 236 GMLVEQAAEAFHLWRGVRPD 255
>P15770 Shikimate dehydrogenase (NADP(+)) [Escherichia coli (strain
K12)]
Length=272
Score = 212 bits (540), Expect = 9e-72
Identities = 121/260 (47%), Positives = 170/260 (65%), Gaps = 10/260 (4%)
Query 5 FAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTVP 64
+AV GNPI S+SP +H FA++L IE Y + LAP++ F + FF GG G NVTVP
Sbjct 4 YAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVP 63
Query 65 FKEQAFAMCHQLTERAKIAKAVNTLW-IENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
FKE+AFA +LTERA +A AVNTL +E+G+L GDNTDG GL+ ++ L++ G RIL
Sbjct 64 FKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRIL 123
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQLHGN 183
++GAGGA+RGV+ PL+ + I NRT RAE+L + A + +++ +++D+L G+
Sbjct 124 LIGAGGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHT---GSIQALSMDELEGH 179
Query 184 -FDLVINATSASLSGDALVLPETLQFK--YAYEMAYGK-PSSFLDQAKARGVP-TTEGFG 238
FDL+INATS+ +SGD +P +L Y Y+M Y K + FL + RG +G G
Sbjct 180 EFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLG 239
Query 239 MLVGQAIEAFSIWHGVKPNL 258
MLV QA AF +WHGV P++
Sbjct 240 MLVAQAAHAFLLWHGVLPDV 259
>P43876 Shikimate dehydrogenase (NADP(+)) [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=272
Score = 184 bits (467), Expect = 9e-61
Identities = 111/261 (43%), Positives = 162/261 (62%), Gaps = 13/261 (5%)
Query 5 FAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTVP 64
+AV GNPI QS+SP + + A + + Y +L LD FE + FF++G G N+T P
Sbjct 4 YAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSP 63
Query 65 FKEQAFAMCHQLTERAKIAKAVNTL-WIENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
FKE+A+ + + ++RAK+A+A NTL +++G+L+ DNTDG GLV +Q LNW +L
Sbjct 64 FKERAYQLADEYSQRAKLAEACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQHVL 123
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLA--GSVSEATLRVMTLDQLH 181
ILGAGGAT+GV+ PL+QA IV+ANRT + ++L + G++ ++ + L
Sbjct 124 ILGAGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQ--- 179
Query 182 GNFDLVINATSASLS-GDALVLPETLQFKYA-YEMAY--GKPSSFLDQAKARGVP-TTEG 236
+DLVINATSA LS G A V E L+ A Y+M Y G + F+ K+ G+ ++G
Sbjct 180 -TYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDG 238
Query 237 FGMLVGQAIEAFSIWHGVKPN 257
FGMLV QA +F +W GV P+
Sbjct 239 FGMLVAQAAHSFHLWRGVMPD 259
>Q44607 Shikimate dehydrogenase (NADP(+)) [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=273
Score = 166 bits (420), Expect = 1e-53
Identities = 103/260 (40%), Positives = 152/260 (58%), Gaps = 10/260 (4%)
Query 5 FAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTVP 64
+AV GNPI S+SPE+H F+++ GI Y PL+ A ++ FF + G G N+T P
Sbjct 9 YAVFGNPINHSKSPEIHSLFSKQTGISHFYKSCNVPLNSLYAVLQDFFKKDGRGANITAP 68
Query 65 FKEQAFAMCHQLTERAKIAKAVNTL-WIENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
FK++A+ C++LT+RA++A++VNTL I+N + GDNTDG GL+ + LN+ + IL
Sbjct 69 FKQEAYFFCNKLTKRAEVAQSVNTLKKIDNCNILGDNTDGIGLLSDLIRLNFIKKNYSIL 128
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQLH-G 182
I+GAGGA RGV++PL+ G + I I NRT AE+LV + V + LH
Sbjct 129 IIGAGGAARGVLFPLLSYGCS-ICIFNRTVLNAEKLVLQFH---KYGNINVFNTNSLHVK 184
Query 183 NFDLVINATSASLSGDALVLPETLQFKYA--YEMAYGKPSS-FLDQAKARGVP-TTEGFG 238
+FDL+INATS + +P + Y+M Y ++ F D ++ G + G G
Sbjct 185 SFDLIINATSHFIQDKDNFIPFSCVSSKTCFYDMNYQTDNTFFFDWSRKTGSNFFSNGIG 244
Query 239 MLVGQAIEAFSIWHGVKPNL 258
MLV QA +F +WH V P +
Sbjct 245 MLVFQAAHSFFLWHNVLPEI 264
>P46240 Shikimate dehydrogenase (NADP(+)) [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=273
Score = 150 bits (379), Expect = 1e-47
Identities = 104/261 (40%), Positives = 149/261 (57%), Gaps = 13/261 (5%)
Query 5 FAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTVP 64
+A+ GNPI+ S+SP++H+ FA + GI Y PLD F + V FF + G NVT P
Sbjct 9 YALFGNPIDHSQSPKIHNFFATQTGILHIYKAINIPLDQFSSVVSDFFKKNIKGANVTAP 68
Query 65 FKEQAFAMCHQLTERAKIAKAVNTL-WIENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
FK++A+ +LTERAKIA++VNTL I + + GDNTDG GL+ + LN+ + IL
Sbjct 69 FKKEAYFFSDKLTERAKIAQSVNTLKKISDKCILGDNTDGIGLLSDLVRLNFIKKNFSIL 128
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQLH-- 181
ILGAGGA +GV+ PL+ G + + I NRT A+ LV+ ++ D+ +
Sbjct 129 ILGAGGAVKGVLLPLLSLGCS-VYILNRTILNAKILVKQF-----NKYGKIFVFDRQNFK 182
Query 182 -GNFDLVINATSASL-SGDALVLPETLQFKYAYEMAYG-KPSSFLDQ-AKARGVPTTEGF 237
NFDLVINA S + + L L + Y+M Y + + F++ +KA G + G
Sbjct 183 QQNFDLVINAMSRNTEKKNFLPLSLITSKTFFYDMNYSTRNTPFINWCSKAGGSFISNGI 242
Query 238 GMLVGQAIEAFSIWHGVKPNL 258
GMLV QA +F WH V P +
Sbjct 243 GMLVFQAAYSFLEWHNVLPEI 263
>Q5HNV1 Shikimate dehydrogenase (NADP(+)) [Staphylococcus epidermidis
(strain ATCC 35984 / RP62A)]
Length=269
Score = 132 bits (331), Expect = 2e-40
Identities = 82/259 (32%), Positives = 133/259 (51%), Gaps = 10/259 (4%)
Query 4 QFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTV 63
+FAVIGNPI S SP +HHA + L +E Y P++ F+ K ++ G NVT+
Sbjct 2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTI 61
Query 64 PFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
P KE+ + E+AK AVNT+ +++G+ G NTDG G V+ ++ + ++ IL
Sbjct 62 PHKERIIPYLDDINEQAKSVGAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYIL 121
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQLHGN 183
ILGAGGA++G+ L + + +ANRT R S++ + + +
Sbjct 122 ILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN------WSLNINKINLSHAESHLDE 175
Query 184 FDLVINATSASLSGD---ALVLPETLQFKYAYEMAYGK-PSSFLDQAKARGVPTTEGFGM 239
FD++IN T A ++G+ + L ++ Y + L +A+ RG P G M
Sbjct 176 FDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTPILIEAEQRGNPIYNGLDM 235
Query 240 LVGQAIEAFSIWHGVKPNL 258
V Q E+F IW ++P++
Sbjct 236 FVHQGAESFKIWTNLEPDI 254
>Q5SJF8 Shikimate dehydrogenase (NADP(+)) [Thermus thermophilus
(strain ATCC 27634 / DSM 579 / HB8)]
Length=263
Score = 123 bits (309), Expect = 2e-37
Identities = 92/259 (36%), Positives = 139/259 (54%), Gaps = 17/259 (7%)
Query 4 QFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGLGINVTV 63
+FAV+G+P+ S SP +H E LG+E +Y PL+ +K + G+N+T+
Sbjct 3 RFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEV-RRAFRGVNLTL 61
Query 64 PFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPLQGTRIL 123
P KE A A ++ A+ AVNT+ G+L G NTD G ++A++A PL+G L
Sbjct 62 PLKEAALAHLDWVSPEAQRIGAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKGP-AL 120
Query 124 ILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTLDQLHGN 183
+LGAGGA R V + L +AG+ E+ + NRT QRA L ++ LR + L++
Sbjct 121 VLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFG-------LRAVPLEKAR-E 171
Query 184 FDLVINATSASLSG-DALVLPETL--QFKYAYEMAYGKP--SSFLDQAKARGVPTTEGFG 238
L++NAT L A LP L + A ++ Y +P + FL +AKA+G+ G
Sbjct 172 ARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVY-RPLWTRFLREAKAKGLKVQTGLP 230
Query 239 MLVGQAIEAFSIWHGVKPN 257
ML Q AF +W G+ P+
Sbjct 231 MLAWQGALAFRLWTGLLPD 249
>O67049 Shikimate dehydrogenase (NADP(+)) [Aquifex aeolicus (strain
VF5)]
Length=269
Score = 120 bits (302), Expect = 3e-36
Identities = 88/266 (33%), Positives = 138/266 (52%), Gaps = 33/266 (12%)
Query 2 TKQFAVIGNPIEQSRSPELHHAFAEKLGI-------ELNYSKRLAPLDGFEA-NVKTFFD 53
T+ + VIG P++ S SP +A G+ E+N + +GF+A VK
Sbjct 6 TQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK---- 61
Query 54 QGGLGINVTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQAL 113
GINVTVPFKE+ + + + AK AVNT+ ENG+ +G NTD G + ++++L
Sbjct 62 ----GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDWIGFLKSLKSL 117
Query 114 NWPLQGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLR 173
++ IL+LGAGGA+R VIY LV+ G ++ + NRT+++A +L Q V
Sbjct 118 IPEVKEKSILVLGAGGASRAVIYALVKEG-AKVFLWNRTKEKAIKLAQKFPLEV------ 170
Query 174 VMTLDQLHGNFDLVINATSASLSGDALVLPETLQF------KYAYEMAYGKPSSFLDQAK 227
V + +++ +++N TS L PE + ++ Y K + L +AK
Sbjct 171 VNSPEEVIDKVQVIVNTTSVGLKDKD---PEIFNYDLIKKDHVVVDIIY-KETKLLKKAK 226
Query 228 ARGVPTTEGFGMLVGQAIEAFSIWHG 253
+G +G ML+ Q IEAF IW+G
Sbjct 227 EKGAKLFDGLPMLLWQGIEAFKIWNG 252
>Q56S04 Shikimate dehydrogenase (NADP(+)) [Helicobacter pylori]
Length=263
Score = 119 bits (297), Expect = 1e-35
Identities = 93/256 (36%), Positives = 136/256 (53%), Gaps = 27/256 (11%)
Query 3 KQFAVIGNPIEQSRSPELHHA----FAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGL- 57
K F V GNPI+ S+SP +H+A F ++LG +Y L PL E+++K+ F GL
Sbjct 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPL---ESHIKSEFLHLGLS 60
Query 58 GINVTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPL 117
G NVT+PFKE+AF +C ++ A AVNTL +EN +L G NTD G ++ +
Sbjct 61 GANVTLPFKERAFQICDKIKGIALECGAVNTLVVENDELVGYNTDALGFWLSLGGEGY-- 118
Query 118 QGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTL 177
LILG+GG+ + + L + G+ ++ + NR+ R Q L +
Sbjct 119 --QSALILGSGGSAKALACELQKQGL-KVSVLNRS-ARGLDFFQRLGCD--------CFM 166
Query 178 DQLHGNFDLVINATSASLSGDALVLPETL-----QFKYAYEMAYGKPSSFLDQAKARGVP 232
D FDL+INATSASL+ + + E L + K AY++AYG + FL AK P
Sbjct 167 DPPKSTFDLIINATSASLNNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELETP 226
Query 233 TTEGFGMLVGQAIEAF 248
+G ML+ QA +F
Sbjct 227 FQDGKDMLIYQAALSF 242
>Q58484 Shikimate dehydrogenase (NADP(+)) [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045
/ NBRC 100440)]
Length=282
Score = 118 bits (296), Expect = 3e-35
Identities = 88/270 (33%), Positives = 134/270 (50%), Gaps = 19/270 (7%)
Query 2 TKQFAVIGNPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQ----GGL 57
TK +IG+P+E S SP +H+A + G+ Y D N+K D G +
Sbjct 6 TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVY----VAFDVLPENLKYVIDGAKALGIV 61
Query 58 GINVTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPL 117
G NVT+P K + ++ + A++ AVNT+ IE+G+ G NTDG G A++ +
Sbjct 62 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIEDGKAIGYNTDGIGARMALEEEIGRV 121
Query 118 QGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSE---ATLRV 174
+ I+I GAGGA R V + L A I+IANRT ++AE L +++A +++ ++
Sbjct 122 KDKNIVIYGAGGAARAVAFEL--AKDNNIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF 179
Query 175 MTLDQLHGNFDLVINATSASLSGDALVLPETLQFKYAYEMAY------GKPSSFLDQAKA 228
LD D++INAT + + V P K +M + L +AK
Sbjct 180 SGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKK 239
Query 229 RGVPTTEGFGMLVGQAIEAFSIWHGVKPNL 258
T G GML+ Q AF IW GV+PN+
Sbjct 240 VNAKTINGLGMLIYQGAVAFKIWTGVEPNI 269
>P0A6D5 Quinate/shikimate dehydrogenase [Escherichia coli (strain
K12)]
Length=288
Score = 99.8 bits (247), Expect = 4e-28
Identities = 81/274 (30%), Positives = 131/274 (48%), Gaps = 25/274 (9%)
Query 1 MTKQFAVIG---NPIEQSRSPELHHAFAEKLGIELNYSKRLAPLDGFEANVKTFFDQGGL 57
+T ++ +IG PI S SPE+ + EK G+ Y D F ++
Sbjct 3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMR 62
Query 58 GINVTVPFKEQAFAMCHQLTERAKIAKAVNTLWIENGQLHGDNTDGQGLVDAIQALNWPL 117
G V++P K+ A +LT AK+ A+NT+ ++G L G NTDG G + AI+ + +
Sbjct 63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDI 122
Query 118 QGTRILILGAGGATRGVIYPLVQAGVTEIVIANRTQQRAEQLVQDLAGSVSEATLRVMTL 177
+G +++LGAGGA+ + G+ EI + NR + ++ + A V+E T V+T+
Sbjct 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA-FAQRVNENTDCVVTV 181
Query 178 DQLH---------GNFDLVINAT--------SASLSGD-ALVLPETLQFKYAYEMAYGKP 219
L + D++ N T + SL D +L+ P L + Y K
Sbjct 182 TDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTK- 240
Query 220 SSFLDQAKARGVPTTEGFGMLVGQAIEAFSIWHG 253
L QA+ G T +G+GML+ Q E F++W G
Sbjct 241 --LLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTG 272
Lambda K H a alpha
0.321 0.137 0.400 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1031576
Database: 8891b228bab73d7da12c15a35c880620.SwissProt.fasta
Posted date: May 20, 2024 3:46 AM
Number of letters in database: 5,677
Number of sequences in database: 21
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
