Comparative Genomics

ACIAD0419 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5cc77fd39991e2d63dd32f43c7e6a22e.SwissProt.fasta
           16 sequences; 1,046 total letters



Query= ACIAD0419

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FEZ6 DNA gyrase inhibitor YacG [Acinetobacter baylyi (strain AT...  153     3e-55
Q74DU7 DNA gyrase inhibitor YacG [Geobacter sulfurreducens (strai...  71.2    1e-22
B5EEE7 DNA gyrase inhibitor YacG [Citrifermentans bemidjiense (st...  66.6    8e-21
C6E808 DNA gyrase inhibitor YacG [Geobacter sp. (strain M21)]         66.2    1e-20
Q88Q66 DNA gyrase inhibitor YacG [Pseudomonas putida (strain ATCC...  66.2    1e-20
A5VY79 DNA gyrase inhibitor YacG [Pseudomonas putida (strain ATCC...  66.2    1e-20
B1JF64 DNA gyrase inhibitor YacG [Pseudomonas putida (strain W619)]   65.9    2e-20
C3KE92 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain...  65.5    2e-20
Q4K5X0 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain...  65.1    4e-20
Q1I4U6 DNA gyrase inhibitor YacG [Pseudomonas entomophila (strain...  64.7    5e-20
Q9HVP7 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ...  63.9    1e-19
Q02GQ9 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ...  63.9    1e-19
B7V073 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ...  63.9    1e-19
A6VBR6 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain ...  63.9    1e-19
P0A8H8 DNA gyrase inhibitor YacG [Escherichia coli (strain K12)]      61.2    1e-18
Q50961 DNA gyrase inhibitor YacG [Neisseria gonorrhoeae]              52.0    6e-15


>Q6FEZ6 DNA gyrase inhibitor YacG [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=68

 Score = 153 bits (387),  Expect = 3e-55
 Identities = 68/68 (100%), Positives = 68/68 (100%), Gaps = 0/68 (0%)

Query  1   MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG  60
           MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG
Sbjct  1   MKDFIMPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKG  60

Query  61  QHSDDYED  68
           QHSDDYED
Sbjct  61  QHSDDYED  68


>Q74DU7 DNA gyrase inhibitor YacG [Geobacter sulfurreducens (strain 
ATCC 51573 / DSM 12127 / PCA)]
Length=59

 Score = 71.2 bits (173),  Expect = 1e-22
 Identities = 29/51 (57%), Positives = 35/51 (69%), Gaps = 0/51 (0%)

Query  6   MPRTFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPT  56
           M  T  CPRC   +VWEGN  RPFCS RCK +DL AWA EEY++   +AP+
Sbjct  1   MITTLTCPRCRAETVWEGNPHRPFCSARCKTVDLAAWADEEYRIAGPEAPS  51


>B5EEE7 DNA gyrase inhibitor YacG [Citrifermentans bemidjiense 
(strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)]
Length=62

 Score = 66.6 bits (161),  Expect = 8e-21
 Identities = 27/57 (47%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  9   TFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD  65
           T  CP+C + +   GN  RPFCS+RCK+IDLG WA E Y++  + AP SG  +  D+
Sbjct  6   TIKCPQCRKETTLAGNPYRPFCSQRCKMIDLGTWADEGYRIPGEKAPESGDEEPGDE  62


>C6E808 DNA gyrase inhibitor YacG [Geobacter sp. (strain M21)]
Length=62

 Score = 66.2 bits (160),  Expect = 1e-20
 Identities = 27/57 (47%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  9   TFPCPRCGQPSVWEGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD  65
           T  CP+C + +   GN  RPFCS+RCK+IDLG WA E Y++  + AP SG  +  D+
Sbjct  6   TIKCPQCRKETTLAGNPYRPFCSQRCKMIDLGTWADEGYRIPGEKAPESGGEEPGDE  62


>Q88Q66 DNA gyrase inhibitor YacG [Pseudomonas putida (strain 
ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=66

 Score = 66.2 bits (160),  Expect = 1e-20
 Identities = 29/44 (66%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W E N  RPFCS+RCKLIDLGAWA+EE+K+
Sbjct  4   PLTVDCPTCGAPVEWSEKNAFRPFCSDRCKLIDLGAWAAEEHKI  47


>A5VY79 DNA gyrase inhibitor YacG [Pseudomonas putida (strain 
ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=66

 Score = 66.2 bits (160),  Expect = 1e-20
 Identities = 29/44 (66%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W E N  RPFCS+RCKLIDLGAWA+EE+K+
Sbjct  4   PLTVDCPTCGAPVEWSEKNAFRPFCSDRCKLIDLGAWAAEEHKI  47


>B1JF64 DNA gyrase inhibitor YacG [Pseudomonas putida (strain 
W619)]
Length=66

 Score = 65.9 bits (159),  Expect = 2e-20
 Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W+  N  RPFCS+RCKLIDLGAWA+EE+K+
Sbjct  4   PLTVDCPTCGAPVEWDAKNAFRPFCSDRCKLIDLGAWAAEEHKI  47


>C3KE92 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain 
SBW25)]
Length=66

 Score = 65.5 bits (158),  Expect = 2e-20
 Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDD  65
           P T  CP CG P  W   N +RPFCS+RCKLIDLGAWA+EE+K+    AP +     S+D
Sbjct  4   PLTVDCPTCGAPVEWTAANLNRPFCSDRCKLIDLGAWAAEEHKIPV--APDAEDELFSED  61


>Q4K5X0 DNA gyrase inhibitor YacG [Pseudomonas fluorescens (strain 
ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=67

 Score = 65.1 bits (157),  Expect = 4e-20
 Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W   N +RPFCS+RCKLIDLGAWA+EE+K+
Sbjct  4   PLTVECPTCGAPVEWTAANINRPFCSDRCKLIDLGAWAAEEHKI  47


>Q1I4U6 DNA gyrase inhibitor YacG [Pseudomonas entomophila (strain 
L48)]
Length=66

 Score = 64.7 bits (156),  Expect = 5e-20
 Identities = 28/44 (64%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W E +  RPFCS+RCKLIDLGAWA+EE+K+
Sbjct  4   PMTVDCPTCGAPVEWGEKSPFRPFCSDRCKLIDLGAWAAEEHKI  47


>Q9HVP7 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=66

 Score = 63.9 bits (154),  Expect = 1e-19
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W+  N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct  4   PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI  47


>Q02GQ9 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain 
UCBPP-PA14)]
Length=66

 Score = 63.9 bits (154),  Expect = 1e-19
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W+  N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct  4   PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI  47


>B7V073 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain 
LESB58)]
Length=66

 Score = 63.9 bits (154),  Expect = 1e-19
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W+  N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct  4   PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI  47


>A6VBR6 DNA gyrase inhibitor YacG [Pseudomonas aeruginosa (strain 
PA7)]
Length=66

 Score = 63.9 bits (154),  Expect = 1e-19
 Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query  7   PRTFPCPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKL  49
           P T  CP CG P  W+  N+ RPFCS+RCKLIDLGAWA+EE+ +
Sbjct  4   PLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAI  47


>P0A8H8 DNA gyrase inhibitor YacG [Escherichia coli (strain K12)]
Length=65

 Score = 61.2 bits (147),  Expect = 1e-18
 Identities = 30/61 (49%), Positives = 40/61 (66%), Gaps = 6/61 (10%)

Query  9   TFPCPRCGQPSVW-EGNESRPFCSERCKLIDLGAWASEEYKLKTQDAPTSGKGQHSDDYE  67
           T  CP CG+  VW E +  RPFCS+RC+LIDLG WA+EE ++     P+SG    SDD+ 
Sbjct  6   TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRI-----PSSGDLSESDDWS  60

Query  68  D  68
           +
Sbjct  61  E  61


>Q50961 DNA gyrase inhibitor YacG [Neisseria gonorrhoeae]
Length=69

 Score = 52.0 bits (123),  Expect = 6e-15
 Identities = 23/42 (55%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query  12  CPRCGQPSVWEG-NESRPFCSERCKLIDLGAWASEEYKLKTQ  52
           CP C    VW+  N  RPFCS+RCKLIDLG WA  +Y +  Q
Sbjct  13  CPTCQTAVVWKPENAFRPFCSQRCKLIDLGGWADGKYTVSGQ  54



Lambda      K        H        a         alpha
   0.324    0.140    0.484    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 34080


  Database: 5cc77fd39991e2d63dd32f43c7e6a22e.SwissProt.fasta
    Posted date:  May 19, 2024  9:26 PM
  Number of letters in database: 1,046
  Number of sequences in database:  16



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40