BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2600626c6359bf29244e0ca6c7e28f8f.SwissProt.fasta
20 sequences; 6,188 total letters
Query= ACIAD0442
Length=311
Score E
Sequences producing significant alignments: (Bits) Value
Q9CM51 Ribosomal large subunit pseudouridine synthase C [Pasteure... 284 2e-98
P0AA40 Ribosomal large subunit pseudouridine synthase C [Shigella... 283 4e-98
P0AA39 Ribosomal large subunit pseudouridine synthase C [Escheric... 283 4e-98
Q8Z7J7 Ribosomal large subunit pseudouridine synthase C [Salmonel... 282 7e-98
Q8FIP7 Ribosomal large subunit pseudouridine synthase C [Escheric... 282 7e-98
P59835 Ribosomal large subunit pseudouridine synthase C [Haemophi... 282 8e-98
Q8X8J3 Ribosomal large subunit pseudouridine synthase C [Escheric... 282 1e-97
Q8ZQ16 Ribosomal large subunit pseudouridine synthase C [Salmonel... 281 2e-97
Q8ZFU1 Ribosomal large subunit pseudouridine synthase C [Yersinia... 278 3e-96
P44433 Ribosomal large subunit pseudouridine synthase C [Haemophi... 276 1e-95
Q8D8G1 Ribosomal large subunit pseudouridine synthase C [Vibrio v... 275 7e-95
Q45480 Uncharacterized RNA pseudouridine synthase YlyB [Bacillus ... 152 3e-47
Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 [Chlo... 130 5e-39
P50513 Ribosomal large subunit pseudouridine synthase D [Zymomona... 120 4e-35
P33643 Ribosomal large subunit pseudouridine synthase D [Escheric... 120 5e-35
P65836 Ribosomal large subunit pseudouridine synthase D [Salmonel... 115 3e-33
P33640 Ribosomal large subunit pseudouridine synthase D [Pseudomo... 115 3e-33
Q9L7A7 Ribosomal large subunit pseudouridine synthase D [Haemophi... 111 1e-31
P0AA37 Dual-specificity RNA pseudouridine synthase RluA [Escheric... 106 8e-31
O66114 Uncharacterized RNA pseudouridine synthase ZMO0505 [Zymomo... 103 2e-29
>Q9CM51 Ribosomal large subunit pseudouridine synthase C [Pasteurella
multocida (strain Pm70)]
Length=326
Score = 284 bits (727), Expect = 2e-98
Identities = 159/316 (50%), Positives = 222/316 (70%), Gaps = 17/316 (5%)
Query 8 QSVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQ 67
Q+V + E +AGQRIDN+L +LKGVPKS IYR++R+G+VRVNK RIK E KL D
Sbjct 12 QAVKMLTISEDEAGQRIDNYLLAKLKGVPKSLIYRILRKGEVRVNKGRIKPEYKLQANDI 71
Query 68 IRVAPIRYEQKDESDAPVSDQVAK--SLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGL 125
+RV P+R +K+ AP+S ++ K L ++++EDE LLV+NKPSGIAVHGGSG+++G+
Sbjct 72 VRVPPVRVSEKEH--APISTKLNKVSQLEKQILFEDECLLVLNKPSGIAVHGGSGLSFGV 129
Query 126 IEAMRAAT-GKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQ 184
IEA+R ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 130 IEALRTLRPDARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKTVQKDYLALVRGQ 189
Query 185 VSLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQ 244
+++ APLL+ ELS+GER VRVS++GKPS+T + + ER++ ATLV ASP++GRTHQ
Sbjct 190 WQSHCKVVKAPLLKNELSSGERIVRVSEQGKPSETRFSIEERYEYATLVKASPVTGRTHQ 249
Query 245 IRVHGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHA--MRLEIP--GYPV-IEAP 294
IRVH GHP+ DDKYG Q G RL LHA +R E P G + I AP
Sbjct 250 IRVHTQYAGHPIALDDKYGDKHFDEQMTQLG--LTRLFLHAFSIRFEHPKTGETLRINAP 307
Query 295 LAEDIQSVVAQLRARK 310
L +++ ++ LR +K
Sbjct 308 LDPEMKKILGALREQK 323
>P0AA40 Ribosomal large subunit pseudouridine synthase C [Shigella
flexneri]
Length=319
Score = 283 bits (724), Expect = 4e-98
Identities = 153/310 (49%), Positives = 214/310 (69%), Gaps = 11/310 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G RL LHA L+ PG IEAP+ E
Sbjct 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306
Query 298 DIQSVVAQLR 307
++ + +LR
Sbjct 307 GLKRCLQKLR 316
>P0AA39 Ribosomal large subunit pseudouridine synthase C [Escherichia
coli (strain K12)]
Length=319
Score = 283 bits (724), Expect = 4e-98
Identities = 153/310 (49%), Positives = 214/310 (69%), Gaps = 11/310 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G RL LHA L+ PG IEAP+ E
Sbjct 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306
Query 298 DIQSVVAQLR 307
++ + +LR
Sbjct 307 GLKRCLQKLR 316
>Q8Z7J7 Ribosomal large subunit pseudouridine synthase C [Salmonella
typhi]
Length=319
Score = 282 bits (722), Expect = 7e-98
Identities = 152/312 (49%), Positives = 216/312 (69%), Gaps = 11/312 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLESGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 HVKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G +RL LHA L+ PG IEAP+ +
Sbjct 247 HTQYAGHPIAFDDRYGDREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGDVMRIEAPMDK 306
Query 298 DIQSVVAQLRAR 309
++ + LR++
Sbjct 307 QLKRCLEVLRSK 318
>Q8FIP7 Ribosomal large subunit pseudouridine synthase C [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=319
Score = 282 bits (722), Expect = 7e-98
Identities = 153/310 (49%), Positives = 214/310 (69%), Gaps = 11/310 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 YVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G RL LHA L+ PG IEAP+ E
Sbjct 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306
Query 298 DIQSVVAQLR 307
++ + +LR
Sbjct 307 GLKRCLQKLR 316
>P59835 Ribosomal large subunit pseudouridine synthase C [Haemophilus
ducreyi (strain 35000HP / ATCC 700724)]
Length=320
Score = 282 bits (722), Expect = 8e-98
Identities = 150/313 (48%), Positives = 218/313 (70%), Gaps = 13/313 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
+V +F + + +AGQR+DNFL +LKGVPKS IYR++R+G+VRVNK R+K + KL D +
Sbjct 10 NVQFFTISDDEAGQRLDNFLLAKLKGVPKSLIYRIVRKGEVRVNKGRVKPDYKLQHNDIV 69
Query 69 RVAPIRYEQKDESDAPVSDQVAK--SLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLI 126
R+ +R K+E AP+S ++ K L ++YED+ +LV+NKPSGI VHGGSG+++G+I
Sbjct 70 RIPLVRVTPKNE--APISTKLNKVAELEQHILYEDDVMLVLNKPSGIGVHGGSGLSFGVI 127
Query 127 EAMRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQV 185
EA+RA + ++LEL+HRIDRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 128 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRALHEQLREKVVQKDYLALVRGQW 187
Query 186 SLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQI 245
+I APLL+ EL +GER V+VS++GKPS+T + + ER+ ATL+ ASP++GRTHQI
Sbjct 188 QAHINVIKAPLLKNELQSGERIVKVSEQGKPSETRFSIEERYPNATLIKASPITGRTHQI 247
Query 246 RVHGLSIGHPLVGDDKYGHQTV-----YSGPEARRLCLHAMRLEIP---GYPVIEAPLAE 297
RVH GHP+ DD+YG Q +G L H++R E P I APL
Sbjct 248 RVHTQYAGHPIACDDRYGDQAFDAKLKQAGLNRLFLHAHSIRFEHPKTAEQMFITAPLDH 307
Query 298 DIQSVVAQLRARK 310
+++++A+LRA K
Sbjct 308 HLKTILAKLRAEK 320
>Q8X8J3 Ribosomal large subunit pseudouridine synthase C [Escherichia
coli O157:H7]
Length=319
Score = 282 bits (721), Expect = 1e-97
Identities = 152/310 (49%), Positives = 214/310 (69%), Gaps = 11/310 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G RL LHA L+ PG IEAP+ +
Sbjct 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDD 306
Query 298 DIQSVVAQLR 307
++ + +LR
Sbjct 307 GLKRCLQKLR 316
>Q8ZQ16 Ribosomal large subunit pseudouridine synthase C [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=319
Score = 281 bits (719), Expect = 2e-97
Identities = 153/313 (49%), Positives = 214/313 (68%), Gaps = 11/313 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + +AGQRIDNFL T+LKGVPKS IYR++R+G+VRVNKKRIK E KL GD++
Sbjct 7 SVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66
Query 69 RVAPIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEA 128
R+ P+R +++E Q +L + ++YED+ +LV+NKPSG AVHGGSG+++G+IE
Sbjct 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126
Query 129 MRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSL 187
+RA + ++LEL+HR+DRDTSG+++++KKRS L+ L + LRE ++K Y ALV+GQ
Sbjct 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186
Query 188 DQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRV 247
+ + APLL+ L +GER VRVS+EGKPS+T ++V ER+ ATLV SP++GRTHQIRV
Sbjct 187 HVKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246
Query 248 HGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRLEI--PG---YPVIEAPLAE 297
H GHP+ DD+YG Q +G +RL LHA L+ PG IEAP+
Sbjct 247 HTQYAGHPIAFDDRYGDREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRIEAPMDN 306
Query 298 DIQSVVAQLRARK 310
++ + LR K
Sbjct 307 ALKRCLQVLRNAK 319
>Q8ZFU1 Ribosomal large subunit pseudouridine synthase C [Yersinia
pestis]
Length=320
Score = 278 bits (711), Expect = 3e-96
Identities = 148/302 (49%), Positives = 208/302 (69%), Gaps = 9/302 (3%)
Query 15 VDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQIRVAPIR 74
+ +AGQRIDNFL +LKGVPKS IYR++R+G+VRVNK RIK E KL+ GD +RV P+R
Sbjct 13 ISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRIKPEYKLADGDVVRVPPVR 72
Query 75 YEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATG 134
+++E +L + +++ED+ LLV+NKPSG AVHGGSG+++G+IE +RA
Sbjct 73 VAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLSFGVIEGLRALRP 132
Query 135 K-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLDQQLID 193
+ ++LEL+HR+DRDTSG+++++KKRS L+ L + LR ++K Y ALV+GQ + I
Sbjct 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALVRGQWQSHCKAIQ 192
Query 194 APLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVHGLSIG 253
APLL+ + +GER V+VS EGKPS+T +++ ERF+ ATLV ASP++GRTHQIRVH L G
Sbjct 193 APLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVTGRTHQIRVHALHAG 252
Query 254 HPLVGDDKYGHQTV---YSGPEARRLCLH--AMRLEIPGYPV---IEAPLAEDIQSVVAQ 305
HP+ DD+YG++ G RL LH A+R E P IEAPL ++ +
Sbjct 253 HPIAFDDRYGYREFDQQLQGTGLHRLFLHAAALRFEHPNTGETMRIEAPLDNQLRHCLLA 312
Query 306 LR 307
LR
Sbjct 313 LR 314
>P44433 Ribosomal large subunit pseudouridine synthase C [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=322
Score = 276 bits (707), Expect = 1e-95
Identities = 154/313 (49%), Positives = 220/313 (70%), Gaps = 13/313 (4%)
Query 9 SVTWFEVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQI 68
SV + E ++GQRIDN+L +LKGVPKS IYR++R+G+VRVNK RIK E KL GD +
Sbjct 12 SVKMLTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQTGDVV 71
Query 69 RVAPIRYEQKDESDAPVSDQVAK--SLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLI 126
R+ P+R +K+ DAP+S + K +L N++++ED+ L+++NKPSGIAVHGGSG+ +G+I
Sbjct 72 RIPPVRVAEKN--DAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNFGVI 129
Query 127 EAMRAATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQV 185
EA+RA + ++LEL+HR+DRDTSG+++I+KKRS L+ L + LR ++K Y ALV+GQ
Sbjct 130 EALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVRGQW 189
Query 186 SLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQI 245
++I A LL+ ELS+GER VRVS++GKPS+T + + ER+ ATLV ASP++GRTHQI
Sbjct 190 QSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRTHQI 249
Query 246 RVHGLSIGHPLVGDDKYGHQTV---YSGPEARRLCLHA--MRLEIP--GYPV-IEAPLAE 297
RVH GHP+ DDKYG + + RL LHA +R E P G + A L
Sbjct 250 RVHTQYAGHPIALDDKYGDKDFDKQMNELGLNRLFLHAFSIRFEHPKNGETLRFNASLDH 309
Query 298 DIQSVVAQLRARK 310
+++++ +LR K
Sbjct 310 QMKAILQKLRESK 322
>Q8D8G1 Ribosomal large subunit pseudouridine synthase C [Vibrio
vulnificus (strain CMCP6)]
Length=315
Score = 275 bits (702), Expect = 7e-95
Identities = 151/309 (49%), Positives = 215/309 (70%), Gaps = 17/309 (6%)
Query 14 EVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQIRVAPI 73
++DE AGQRIDNFL +LK VPKS IYR++R+G+VRVNKKR+KAE KL+ GD +R+ P+
Sbjct 12 DIDEDMAGQRIDNFLRNQLKDVPKSMIYRIVRKGEVRVNKKRVKAEYKLAAGDVVRIPPV 71
Query 74 RYEQKDESDAPVS--DQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRA 131
E+KD AP + ++VA+ L + ++YED+ LLV+NKPSG AVHGGSG+ +G IEA+RA
Sbjct 72 TLEKKDPETAPSTKLNKVAE-LQDLIIYEDDHLLVLNKPSGTAVHGGSGLKFGAIEALRA 130
Query 132 ATGK-KYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLDQQ 190
+ ++LEL+HRIDRDTSG+++++KKRS L+ LQ RE ++K Y ALV G+ +
Sbjct 131 LRPEARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYFALVMGEWKNSCK 190
Query 191 LIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVHGL 250
+++APLL+ E+++ VRV+ GKPS+T ++V E+F +ATLV ASP++GRTHQIRVH
Sbjct 191 VVNAPLLKNEVNS---IVRVNPNGKPSETRFKVIEKFPQATLVQASPITGRTHQIRVHTQ 247
Query 251 SIGHPLVGDDKYGHQ--TVYSGPEA-RRLCLHAMRLEIPGYPV------IEAPLAEDIQS 301
GHP+ DD+YG + Y+ RL LHA + +P I AP+ E ++
Sbjct 248 YSGHPIAWDDRYGDRRFDAYTAQHGLNRLFLHAANIRFT-HPATEQPMEINAPMGEQLEK 306
Query 302 VVAQLRARK 310
VV LR +
Sbjct 307 VVQSLRTSR 315
>Q45480 Uncharacterized RNA pseudouridine synthase YlyB [Bacillus
subtilis (strain 168)]
Length=303
Score = 152 bits (383), Expect = 3e-47
Identities = 103/301 (34%), Positives = 153/301 (51%), Gaps = 20/301 (7%)
Query 17 EHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQIRVAPIRYE 76
E Q +RID FL + ++++ + +++GQV VN +KA K+ GDQ+ V E
Sbjct 10 EEQKSERIDKFLASTENDWSRTQVQQWVKDGQVVVNGSAVKANYKIQPGDQVTVTVPEPE 69
Query 77 QKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYG-LIEAMRA---- 131
D P+ + YED+ +LVVNKP G+ VH G G L+ + A
Sbjct 70 ALDVLAEPMDLDI--------YYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTD 121
Query 132 ---ATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLD 188
G ++HRID+DTSGL+M++K + L + L + + Y A+V G +S D
Sbjct 122 LSGINGVMRPGIVHRIDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHD 181
Query 189 QQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVH 248
IDAP+ R + + + V+++GK + T + V ERF++ TLV +GRTHQIRVH
Sbjct 182 DGTIDAPIGRDK--KDRQSMTVTRDGKNAVTHFHVLERFQDFTLVECQLETGRTHQIRVH 239
Query 249 GLSIGHPLVGDDKYGHQTV--YSGPEARRLCLHAMRLEIPGYPVIEAPLAEDIQSVVAQL 306
IG PL GD KYG + ++G L Y EAPL ED+ ++ L
Sbjct 240 MKYIGFPLAGDPKYGPRKTIDFNGQALHAGVLGFDHPRTGEYVEFEAPLPEDMAELIENL 299
Query 307 R 307
R
Sbjct 300 R 300
>Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 [Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)]
Length=316
Score = 130 bits (328), Expect = 5e-39
Identities = 98/304 (32%), Positives = 160/304 (53%), Gaps = 27/304 (9%)
Query 19 QAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQIRVAPIRYEQK 78
Q +RID FL + + ++++ RLI +G V + + +A + G I++
Sbjct 23 QTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRSPRASQPVRPGAVIQLT------- 75
Query 79 DESDAPV-SDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYG-LIEAMRAAT--- 133
P+ ++ VA+ + VVYED + V+NKP+G+ VH G G L+ A+ A
Sbjct 76 --IPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNALLARYPDL 133
Query 134 ---GKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLDQQ 190
G+ ++HR+DRDTSGL++I++ ++ L D + ++RK Y ALV G+ +
Sbjct 134 AIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIGRPP-ETG 192
Query 191 LIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVHGL 250
IDAP+ R R+ V +G+P++T +R+ + F + +L+ +GRTHQIRVH
Sbjct 193 TIDAPIGRDP--RDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTHQIRVHLR 250
Query 251 SIGHPLVGDDKYGHQTVYSGPEARRLCLHAMRLEI-----PGYPVIEAPLAEDIQSVVAQ 305
+G+P+VGD YG + S R LHA L + + APL D+Q V+ Q
Sbjct 251 HLGYPIVGDPVYGPRR--SHLHLSRQFLHAAYLGLVHPRSGRWQEFTAPLPADLQIVLRQ 308
Query 306 LRAR 309
L+ R
Sbjct 309 LQDR 312
>P50513 Ribosomal large subunit pseudouridine synthase D [Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)]
Length=317
Score = 120 bits (301), Expect = 4e-35
Identities = 93/313 (30%), Positives = 144/313 (46%), Gaps = 34/313 (11%)
Query 17 EHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGD----QIRVAP 72
E G R+D L + + + + R+ LI G V ++ + + I + +
Sbjct 10 EEMIGWRLDRALASLITRLSRERLKNLISSGCVSNSQGALVRDPAFKIKSLDCFTVDIPL 69
Query 73 IRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSG---------VAY 123
R + D P+ +V+EDE LLVVNKP+G+ VH +G + Y
Sbjct 70 PRPAHNEPQDIPLE----------IVFEDEHLLVVNKPAGMVVHPAAGNYDNTLVNALLY 119
Query 124 GLIEAMRAATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKG 183
+ G ++HRID+DTSGL++++K L +H I + Y A+V G
Sbjct 120 HCAGKLSGIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRRYRAIVDG 179
Query 184 QVSLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTH 243
SL Q +DAPL R ++ + + GK + T +R+ K A+L+ +GRTH
Sbjct 180 HPSL-QGHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIECRLETGRTH 238
Query 244 QIRVHGLSIGHPLVGDDKYG-----HQTVYSGPEARRLCLHAMRL----EIPGYPV-IEA 293
Q+RVH SIGH L+GD YG H + +R LHA L I G V +A
Sbjct 239 QVRVHMSSIGHSLLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISGKQVDFDA 298
Query 294 PLAEDIQSVVAQL 306
+ +D+Q + L
Sbjct 299 EMPQDMQLLFKML 311
>P33643 Ribosomal large subunit pseudouridine synthase D [Escherichia
coli (strain K12)]
Length=326
Score = 120 bits (301), Expect = 5e-35
Identities = 95/318 (30%), Positives = 154/318 (48%), Gaps = 38/318 (12%)
Query 15 VDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRI-KAESKLSIGDQIRV-AP 72
V E+Q GQR+D L +SRI I + +V VN K K + K+ G+Q+ + A
Sbjct 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAE 70
Query 73 IRYEQKDE-SDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSG-----VAYGLI 126
I E + E D P+ +VYEDE ++++NKP + VH G+G V L+
Sbjct 71 IEEEARFEPQDIPLD----------IVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALL 120
Query 127 EAMRAATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVS 186
++HR+D+DT+GL++++K L + L+ +I + Y A+ G ++
Sbjct 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180
Query 187 LDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIR 246
+D P+ R+ + V GKP+ T +R+ E F+ T + +GRTHQIR
Sbjct 181 AGGT-VDEPISRHPTKR--THMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIR 237
Query 247 VHGLSIGHPLVGDDKYGHQT----------VYSGPEARRLCLHAMRLEIPGYPVI----- 291
VH I HPLVGD YG + + + + R LHA L + +P+
Sbjct 238 VHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL-YHPISGIEME 296
Query 292 -EAPLAEDIQSVVAQLRA 308
AP+ +D+ ++ +RA
Sbjct 297 WHAPIPQDMVELIEVMRA 314
>P65836 Ribosomal large subunit pseudouridine synthase D [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=326
Score = 115 bits (289), Expect = 3e-33
Identities = 91/319 (29%), Positives = 154/319 (48%), Gaps = 40/319 (13%)
Query 15 VDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRI-KAESKLSIGDQIRVAPI 73
V E+Q GQR+D L +SRI I +V VN + K + K+ G+++ +
Sbjct 11 VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAI--- 67
Query 74 RYEQKDESDAPVSDQV---AKSLLNRVVYEDEGLLVVNKPSGIAVHGGSG-----VAYGL 125
DA + +++ A+ + +VYED+ +LV+NKP + VH G+G V L
Sbjct 68 --------DAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNAL 119
Query 126 IEAMRAATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQV 185
+ ++HR+D+DT+GL++++K L + L+ +I + Y A+ G +
Sbjct 120 LHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHM 179
Query 186 SLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQI 245
+ ++ P+ R+ + V GKP+ T +R+ E F+ T + +GRTHQI
Sbjct 180 TAGGT-VNEPISRHPTKR--THMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQI 236
Query 246 RVHGLSIGHPLVGDDKYG----------HQTVYSGPEARRLCLHAMRLEIPGYPVI---- 291
RVH I HPLVGD YG + + + + R LHA L + +PV
Sbjct 237 RVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDRQALHATMLRL-YHPVSGIEM 295
Query 292 --EAPLAEDIQSVVAQLRA 308
AP+ +D+ ++ +RA
Sbjct 296 EWHAPIPQDMVDLIDAMRA 314
>P33640 Ribosomal large subunit pseudouridine synthase D [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=320
Score = 115 bits (288), Expect = 3e-33
Identities = 93/315 (30%), Positives = 155/315 (49%), Gaps = 33/315 (10%)
Query 14 EVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRIKAESKLSIGDQIRVAPI 73
EV GQR+D +SR+ I++G++ V+ ++ + G Q+ +
Sbjct 10 EVPFELGGQRLDQIAAQLFPEHSRSRLAGWIKDGRLTVDGAVLRPRDIVHSGAQLVL--- 66
Query 74 RYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYG-----LIEA 128
E + E+ + +A+ + +VYEDE +LV++KP+G+ VH +G G L+
Sbjct 67 --EAEQEAQG---EWLAQDIELEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYH 121
Query 129 MRAATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLD 188
+ ++HR+D+DT+GL++++K L L+ + + Y A+V G ++
Sbjct 122 VPDIANVPRAGIVHRLDKDTTGLMVVAKTLEAHTKLVAQLQARSVSRIYEAIVIGVIT-S 180
Query 189 QQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVH 248
IDAP+ R+ + +++ V GK + + +RV ERF+ T +GRTHQIRVH
Sbjct 181 GGTIDAPIGRHGVQR--QKMAVVDAGKVAVSHYRVLERFRAHTHTRVKLETGRTHQIRVH 238
Query 249 GLSIGHPLVGDDKYG----------HQTVYSGPEARRLCLHAMRLEIPGYPVI------E 292
IG+PLVGD YG V + E R LHA LE+ +P E
Sbjct 239 MSHIGYPLVGDPVYGGRFRIPPVASQTLVQTLREFPRQALHARFLEL-DHPATGVRMKWE 297
Query 293 APLAEDIQSVVAQLR 307
+PL ED +++ LR
Sbjct 298 SPLPEDFLWLLSLLR 312
>Q9L7A7 Ribosomal large subunit pseudouridine synthase D [Haemophilus
ducreyi (strain 35000HP / ATCC 700724)]
Length=325
Score = 111 bits (277), Expect = 1e-31
Identities = 94/323 (29%), Positives = 152/323 (47%), Gaps = 48/323 (15%)
Query 14 EVDEHQAGQRIDNFLFTRLKGVPKSRIYRLIREGQVRVNKKRI-KAESKLSIGDQIRV-A 71
E+ G R+D L +SRI I V+VN + +A K+ G+QI + A
Sbjct 10 EISADLLGYRLDQALAQLFPDYSRSRIKVWIENDLVKVNGIIVNRARGKVFGGEQIEIQA 69
Query 72 PIRYEQKDESDAPVSDQVAKSLLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLI----- 126
I E + E +++ +V+ED+ ++++NKP + VH G+G G +
Sbjct 70 EIEEEIRFEP---------QNIPLNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALL 120
Query 127 -------EAMRAATGKKYLELIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKTYAA 179
E RA +IHR+D+DT+GL++++K L L++ +I + Y A
Sbjct 121 YYYPPIAEVPRAG-------IIHRLDKDTTGLMVVAKNIPAQTHLVTALQKRRITREYEA 173
Query 180 LVKGQVSLDQQLIDAPLLRYELSNGERRVRVSKEGKPSKTEWRVAERFKEATLVYASPLS 239
+ G ++ + +D P+ R+ + V GKP+ T +R+ ERF+ T + +
Sbjct 174 IASGIMTQGGK-VDEPMARHPTKR--TAMAVHPMGKPAITHYRIMERFRNYTRLRLRLET 230
Query 240 GRTHQIRVHGLSIGHPLVGDDKYGHQ------------TVYSGPEARRLCLHAMRLEIP- 286
GRTHQIRVH I HPL+GD YG + TV + + L +RLE P
Sbjct 231 GRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGSSEAFLTVLRAFQRQALHATMLRLEHPI 290
Query 287 GYPVIE--APLAEDIQSVVAQLR 307
+IE APL D ++ L+
Sbjct 291 NGELIECHAPLPADFVELIEALK 313
>P0AA37 Dual-specificity RNA pseudouridine synthase RluA [Escherichia
coli (strain K12)]
Length=219
Score = 106 bits (265), Expect = 8e-31
Identities = 69/199 (35%), Positives = 110/199 (55%), Gaps = 14/199 (7%)
Query 97 VVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATGKKYLELIHRIDRDTSGLVMISK 156
++Y+D+ ++VVNKPSG+ G + R E +HR+D TSG+++++
Sbjct 16 ILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVAL 75
Query 157 KRSTLKLLQDLLREHKIRKTYAALVKGQVSLDQQLIDAPLLRYELSNGERRVRVSKEGKP 216
++ + L+ RE + +K Y A V G S + L+D PL+ + N ++ + GKP
Sbjct 76 TKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLI-CDWPNRPKQKVCYETGKP 134
Query 217 SKTEWRVAERFKEATL-VYASPLSGRTHQIRVHGLSIGHPLVGDDKYGHQTVYSGPEAR- 274
++TE+ V E + T V P++GR+HQ+RVH L++GHP++GD Y+ PEAR
Sbjct 135 AQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD------RFYASPEARA 188
Query 275 ---RLCLHAMRLEI--PGY 288
RL LHA L I P Y
Sbjct 189 MAPRLLLHAEMLTITHPAY 207
>O66114 Uncharacterized RNA pseudouridine synthase ZMO0505 [Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)]
Length=219
Score = 103 bits (256), Expect = 2e-29
Identities = 59/196 (30%), Positives = 106/196 (54%), Gaps = 6/196 (3%)
Query 93 LLNRVVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATG--KKYLELIHRIDRDTSG 150
L RV++ D ++++KP+G+ V + L + + K++ ++HR+DRDTSG
Sbjct 4 LAKRVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYLASLCFGFKRWPSIVHRLDRDTSG 63
Query 151 LVMISKKRSTLKLLQDLLREHKIRKTYAALVKGQVSLDQQLIDAPLLRYELSNGERRVRV 210
+++++ + L + + +++K Y A+++G ++ +ID PLL+ R+
Sbjct 64 CLLLARNPKMHRRLSEAFSQGQVKKCYWAILEGVPEKNEGIIDLPLLKISSPKSGWRIVA 123
Query 211 SKEGKPSKTEWRVAERFKEATLVYASPLSGRTHQIRVHGLS-IGHPLVGDDKYGHQTVYS 269
+GK + T W + + K +LV P +GRTHQ+RVH + +G P+VGD YG +
Sbjct 124 DDKGKRAVTHWEILAKNKGRSLVAFRPETGRTHQLRVHAATGLGLPIVGDPFYGS---HK 180
Query 270 GPEARRLCLHAMRLEI 285
R+ LHA LEI
Sbjct 181 DENISRMMLHAHSLEI 196
Lambda K H a alpha
0.320 0.136 0.388 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1385472
Database: 2600626c6359bf29244e0ca6c7e28f8f.SwissProt.fasta
Posted date: May 9, 2024 12:33 AM
Number of letters in database: 6,188
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
