BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a77c7af233b02da693991756e481b62b.SwissProt.fasta
23 sequences; 12,145 total letters
Query= ACIAD0496
Length=87
Score E
Sequences producing significant alignments: (Bits) Value
Q5RC80 RNA-binding protein 39 [Pongo abelii] 64.3 1e-16
Q8VH51 RNA-binding protein 39 [Mus musculus] 64.3 1e-16
Q14498 RNA-binding protein 39 [Homo sapiens] 64.3 1e-16
Q1DXH0 Polyadenylate-binding protein, cytoplasmic and nuclear [Co... 63.2 3e-16
A4QUF0 Polyadenylate-binding protein, cytoplasmic and nuclear [Py... 62.4 5e-16
Q2HJG2 Poly(U)-binding-splicing factor PUF60 [Bos taurus] 60.1 3e-15
Q5R469 Poly(U)-binding-splicing factor PUF60 [Pongo abelii] 60.1 3e-15
Q9UHX1 Poly(U)-binding-splicing factor PUF60 [Homo sapiens] 60.1 3e-15
Q9WV25 Poly(U)-binding-splicing factor PUF60 [Rattus norvegicus] 60.1 3e-15
Q3UEB3 Poly(U)-binding-splicing factor PUF60 [Mus musculus] 60.1 3e-15
Q9H0L4 Cleavage stimulation factor subunit 2 tau variant [Homo sa... 60.1 3e-15
Q8C7E9 Cleavage stimulation factor subunit 2 tau variant [Mus mus... 60.1 3e-15
Q8HXM1 Cleavage stimulation factor subunit 2 [Bos taurus] 59.7 4e-15
Q5RDA3 Cleavage stimulation factor subunit 2 [Pongo abelii] 59.7 4e-15
P33240 Cleavage stimulation factor subunit 2 [Homo sapiens] 59.7 4e-15
Q8BIQ5 Cleavage stimulation factor subunit 2 [Mus musculus] 59.7 4e-15
A5DW14 Polyadenylate-binding protein, cytoplasmic and nuclear [Lo... 59.7 4e-15
P49314 31 kDa ribonucleoprotein, chloroplastic [Nicotiana plumbag... 58.9 6e-15
Q86U06 Probable RNA-binding protein 23 [Homo sapiens] 58.5 1e-14
P19683 31 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvest... 58.2 1e-14
P19682 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvest... 57.8 2e-14
Q12926 ELAV-like protein 2 [Homo sapiens] 57.8 2e-14
Q60899 ELAV-like protein 2 [Mus musculus] 57.8 2e-14
>Q5RC80 RNA-binding protein 39 [Pongo abelii]
Length=524
Score = 64.3 bits (155), Expect = 1e-16
Identities = 30/86 (35%), Positives = 56/86 (65%), Gaps = 0/86 (0%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
M++ V +L ++TE L +F+PFG++ S L++D +TG+SKG+GF+ + A KA++
Sbjct 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query 61 GLNTFKVKGAGIRVKAADEQNNQNNA 86
LN F++ G ++V E+ + ++A
Sbjct 310 QLNGFELAGRPMKVGHVTERTDASSA 335
Score = 35.8 bits (81), Expect = 1e-06
Identities = 22/81 (27%), Positives = 38/81 (47%), Gaps = 1/81 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ L + ++L E F G+V ++ D+ + +SKG +VE AI GL
Sbjct 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GL 213
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
+V G I V+A+ + N+
Sbjct 214 TGQRVLGVPIIVQASQAEKNR 234
>Q8VH51 RNA-binding protein 39 [Mus musculus]
Length=530
Score = 64.3 bits (155), Expect = 1e-16
Identities = 30/86 (35%), Positives = 56/86 (65%), Gaps = 0/86 (0%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
M++ V +L ++TE L +F+PFG++ S L++D +TG+SKG+GF+ + A KA++
Sbjct 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query 61 GLNTFKVKGAGIRVKAADEQNNQNNA 86
LN F++ G ++V E+ + ++A
Sbjct 310 QLNGFELAGRPMKVGHVTERTDASSA 335
Score = 35.8 bits (81), Expect = 1e-06
Identities = 22/81 (27%), Positives = 38/81 (47%), Gaps = 1/81 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ L + ++L E F G+V ++ D+ + +SKG +VE AI GL
Sbjct 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GL 213
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
+V G I V+A+ + N+
Sbjct 214 TGQRVLGVPIIVQASQAEKNR 234
Score = 18.1 bits (35), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 24 FGQVASCTLVLDQKTGKSK 42
FG VA + V+D +T S+
Sbjct 387 FGAVAEFSFVIDLQTRLSQ 405
>Q14498 RNA-binding protein 39 [Homo sapiens]
Length=530
Score = 64.3 bits (155), Expect = 1e-16
Identities = 30/86 (35%), Positives = 56/86 (65%), Gaps = 0/86 (0%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
M++ V +L ++TE L +F+PFG++ S L++D +TG+SKG+GF+ + A KA++
Sbjct 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query 61 GLNTFKVKGAGIRVKAADEQNNQNNA 86
LN F++ G ++V E+ + ++A
Sbjct 310 QLNGFELAGRPMKVGHVTERTDASSA 335
Score = 35.8 bits (81), Expect = 1e-06
Identities = 22/81 (27%), Positives = 38/81 (47%), Gaps = 1/81 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ L + ++L E F G+V ++ D+ + +SKG +VE AI GL
Sbjct 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GL 213
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
+V G I V+A+ + N+
Sbjct 214 TGQRVLGVPIIVQASQAEKNR 234
Score = 18.1 bits (35), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 0/19 (0%)
Query 24 FGQVASCTLVLDQKTGKSK 42
FG VA + V+D +T S+
Sbjct 387 FGAVAEFSFVIDLQTRLSQ 405
>Q1DXH0 Polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis (strain RS)]
Length=768
Score = 63.2 bits (152), Expect = 3e-16
Identities = 29/81 (36%), Positives = 49/81 (60%), Gaps = 0/81 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V+N+++ TE+E +LF+ FG++ S TL D ++GKS+GFGFV A A++ L
Sbjct 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
N KG + V A +++ +
Sbjct 298 NDKDFKGQKLYVGRAQKKHER 318
Score = 47.4 bits (111), Expect = 1e-10
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 0/72 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V L+ SVTE L ELF GQVAS + D T +S G+ +V + + +A++ L
Sbjct 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query 63 NTFKVKGAGIRV 74
N +KG R+
Sbjct 117 NYTLIKGRPCRI 128
Score = 45.1 bits (105), Expect = 6e-10
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (2%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ ++NL+ ++ + L + F FG + SC + D+ G SKG+GFV A A AIK +
Sbjct 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAAQNAIKHV 203
Query 63 N 63
N
Sbjct 204 N 204
Score = 32.3 bits (72), Expect = 2e-05
Identities = 18/43 (42%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
Query 39 GKSKGFGFVEMPHAREAIKAIKGLNTFKVKGAGIRVKAADEQN 81
GKSKGFGFV EA KA+ +N V G + V A ++
Sbjct 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKD 472
>A4QUF0 Polyadenylate-binding protein, cytoplasmic and nuclear
[Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)]
Length=762
Score = 62.4 bits (150), Expect = 5e-16
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 0/81 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
I V+N+ VT+ E LF+ +G V S +L DQ+TGKS+GFGFV +A KA++ L
Sbjct 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
N + G + V A +++ +
Sbjct 304 NEKEFHGQNLYVGRAQKKHER 324
Score = 45.1 bits (105), Expect = 6e-10
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 0/72 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V L+ SVTE L ELF G VAS + D T +S G+ +V + KA++ L
Sbjct 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query 63 NTFKVKGAGIRV 74
N +KG R+
Sbjct 123 NYTLIKGRPCRI 134
Score = 43.5 bits (101), Expect = 2e-09
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (2%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ ++NL+ ++ + L + F FG + SC + D+ G SKG+GFV A +AIK +
Sbjct 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query 63 N 63
N
Sbjct 210 N 210
Score = 35.0 bits (79), Expect = 2e-06
Identities = 28/131 (21%), Positives = 48/131 (37%), Gaps = 46/131 (35%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQ------------------------ 36
+ + ++NL+ V +++L +LF FG + S ++ D
Sbjct 346 VNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKP 405
Query 37 ----------------------KTGKSKGFGFVEMPHAREAIKAIKGLNTFKVKGAGIRV 74
K GKSKGFGFV + +A KA+ +N V + V
Sbjct 406 EEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYV 465
Query 75 KAADEQNNQNN 85
A ++ + N
Sbjct 466 ALAQRKDVRKN 476
>Q2HJG2 Poly(U)-binding-splicing factor PUF60 [Bos taurus]
Length=530
Score = 60.1 bits (144), Expect = 3e-15
Identities = 26/76 (34%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V ++ + +++ ++ +F+ FG++ SCTL D TGK KG+GF+E A+ + A+
Sbjct 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query 62 LNTFKVKGAGIRVKAA 77
+N F + G +RV A
Sbjct 258 MNLFDLGGQYLRVGKA 273
Score = 40.8 bits (94), Expect = 2e-08
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V ++ + E + + F PFG + S + D T K KGF FVE A A++
Sbjct 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query 62 LNTFKVKGAGIRV 74
+N+ + G I+V
Sbjct 161 MNSVMLGGRNIKV 173
Score = 23.1 bits (48), Expect = 0.035
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (8%)
Query 14 EQELLELFQPFGQVASCTLVLDQKTGKSKGFG-----FVEMPHAREAIKAIKGLNTFKVK 68
E E+ E FG V + ++ +K G+ + FVE A E KAI+ LN
Sbjct 451 EGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQDLNGRWFA 509
Query 69 GAGIRVKAADEQNNQNN 85
G + + D++ N+
Sbjct 510 GRKVVAEVYDQERFDNS 526
>Q5R469 Poly(U)-binding-splicing factor PUF60 [Pongo abelii]
Length=558
Score = 60.1 bits (144), Expect = 3e-15
Identities = 26/76 (34%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V ++ + +++ ++ +F+ FG++ SCTL D TGK KG+GF+E A+ + A+
Sbjct 226 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 285
Query 62 LNTFKVKGAGIRVKAA 77
+N F + G +RV A
Sbjct 286 MNLFDLGGQYLRVGKA 301
Score = 40.8 bits (94), Expect = 2e-08
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V ++ + E + + F PFG + S + D T K KGF FVE A A++
Sbjct 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 188
Query 62 LNTFKVKGAGIRV 74
+N+ + G I+V
Sbjct 189 MNSVMLGGRNIKV 201
Score = 23.5 bits (49), Expect = 0.026
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (8%)
Query 14 EQELLELFQPFGQVASCTLVLDQKTGKSKGFG-----FVEMPHAREAIKAIKGLNTFKVK 68
E E+ E FG V + ++ +K G+ + FVE A E KAI+ LN
Sbjct 479 EGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 537
Query 69 GAGIRVKAADEQNNQNN 85
G + + D++ N+
Sbjct 538 GRKVVAEVYDQERFDNS 554
>Q9UHX1 Poly(U)-binding-splicing factor PUF60 [Homo sapiens]
Length=559
Score = 60.1 bits (144), Expect = 3e-15
Identities = 26/76 (34%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V ++ + +++ ++ +F+ FG++ SCTL D TGK KG+GF+E A+ + A+
Sbjct 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query 62 LNTFKVKGAGIRVKAA 77
+N F + G +RV A
Sbjct 287 MNLFDLGGQYLRVGKA 302
Score = 40.8 bits (94), Expect = 2e-08
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V ++ + E + + F PFG + S + D T K KGF FVE A A++
Sbjct 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query 62 LNTFKVKGAGIRV 74
+N+ + G I+V
Sbjct 190 MNSVMLGGRNIKV 202
Score = 23.5 bits (49), Expect = 0.026
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (8%)
Query 14 EQELLELFQPFGQVASCTLVLDQKTGKSKGFG-----FVEMPHAREAIKAIKGLNTFKVK 68
E E+ E FG V + ++ +K G+ + FVE A E KAI+ LN
Sbjct 480 EGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 538
Query 69 GAGIRVKAADEQNNQNN 85
G + + D++ N+
Sbjct 539 GRKVVAEVYDQERFDNS 555
>Q9WV25 Poly(U)-binding-splicing factor PUF60 [Rattus norvegicus]
Length=564
Score = 60.1 bits (144), Expect = 3e-15
Identities = 26/76 (34%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V ++ + +++ ++ +F+ FG++ SCTL D TGK KG+GF+E A+ + A+
Sbjct 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query 62 LNTFKVKGAGIRVKAA 77
+N F + G +RV A
Sbjct 292 MNLFDLGGQYLRVGKA 307
Score = 40.8 bits (94), Expect = 2e-08
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V ++ + E + + F PFG + S + D T K KGF FVE A A++
Sbjct 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query 62 LNTFKVKGAGIRV 74
+N+ + G I+V
Sbjct 195 MNSVMLGGRNIKV 207
Score = 23.5 bits (49), Expect = 0.026
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (8%)
Query 14 EQELLELFQPFGQVASCTLVLDQKTGKSKGFG-----FVEMPHAREAIKAIKGLNTFKVK 68
E E+ E FG V + ++ +K G+ + FVE A E KAI+ LN
Sbjct 485 EGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFG 543
Query 69 GAGIRVKAADEQNNQNN 85
G + + D++ N+
Sbjct 544 GRKVVAEVYDQERFDNS 560
>Q3UEB3 Poly(U)-binding-splicing factor PUF60 [Mus musculus]
Length=564
Score = 60.1 bits (144), Expect = 3e-15
Identities = 26/76 (34%), Positives = 47/76 (62%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V ++ + +++ ++ +F+ FG++ SCTL D TGK KG+GF+E A+ + A+
Sbjct 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query 62 LNTFKVKGAGIRVKAA 77
+N F + G +RV A
Sbjct 292 MNLFDLGGQYLRVGKA 307
Score = 40.8 bits (94), Expect = 2e-08
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 0/73 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V ++ + E + + F PFG + S + D T K KGF FVE A A++
Sbjct 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query 62 LNTFKVKGAGIRV 74
+N+ + G I+V
Sbjct 195 MNSVMLGGRNIKV 207
Score = 23.5 bits (49), Expect = 0.026
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (8%)
Query 14 EQELLELFQPFGQVASCTLVLDQKTGKSKGFG-----FVEMPHAREAIKAIKGLNTFKVK 68
E E+ E FG V + ++ +K G+ + FVE A E KAI+ LN
Sbjct 485 EGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRWFG 543
Query 69 GAGIRVKAADEQNNQNN 85
G + + D++ N+
Sbjct 544 GRKVVAEVYDQERFDNS 560
>Q9H0L4 Cleavage stimulation factor subunit 2 tau variant [Homo
sapiens]
Length=616
Score = 60.1 bits (144), Expect = 3e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>Q8C7E9 Cleavage stimulation factor subunit 2 tau variant [Mus
musculus]
Length=632
Score = 60.1 bits (144), Expect = 3e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>Q8HXM1 Cleavage stimulation factor subunit 2 [Bos taurus]
Length=572
Score = 59.7 bits (143), Expect = 4e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>Q5RDA3 Cleavage stimulation factor subunit 2 [Pongo abelii]
Length=577
Score = 59.7 bits (143), Expect = 4e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>P33240 Cleavage stimulation factor subunit 2 [Homo sapiens]
Length=577
Score = 59.7 bits (143), Expect = 4e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>Q8BIQ5 Cleavage stimulation factor subunit 2 [Mus musculus]
Length=580
Score = 59.7 bits (143), Expect = 4e-15
Identities = 31/82 (38%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V N+ TE++L ++F G V S LV D++TGK KG+GF E A+ A++ L
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query 63 NTFKVKGAGIRV-KAADEQNNQ 83
N + G +RV AA E+N +
Sbjct 78 NGREFSGRALRVDNAASEKNKE 99
>A5DW14 Polyadenylate-binding protein, cytoplasmic and nuclear
[Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 /
JCM 1781 / NBRC 1676 / NRRL YB-4239)]
Length=661
Score = 59.7 bits (143), Expect = 4e-15
Identities = 33/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
I V+N++ + TE+E ELF PFG++ S L D + GKSKGFGFV A KA++ L
Sbjct 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEEL 308
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
N ++ G I V A ++ +
Sbjct 309 NDKEINGQKIYVGRAQKKRER 329
Score = 55.5 bits (132), Expect = 1e-13
Identities = 30/81 (37%), Positives = 46/81 (57%), Gaps = 1/81 (1%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
+ + V+NL+ + ++L E F+PFG + S +++D GKSKGFGFV EA KAI
Sbjct 351 VNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAIT 409
Query 61 GLNTFKVKGAGIRVKAADEQN 81
+N V G + V A ++
Sbjct 410 EMNQRMVNGKPLYVALAQRKD 430
Score = 47.0 bits (110), Expect = 1e-10
Identities = 27/72 (38%), Positives = 37/72 (51%), Gaps = 0/72 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V L SV E L E+F P GQVAS + D + KS G+ +V + KAI+ L
Sbjct 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query 63 NTFKVKGAGIRV 74
N V+G R+
Sbjct 129 NYTPVEGRPCRI 140
Score = 36.2 bits (82), Expect = 8e-07
Identities = 20/61 (33%), Positives = 32/61 (52%), Gaps = 1/61 (2%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
I ++NL ++ + L + F FG++ S + D G+SK FGFV A AI+ +
Sbjct 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESV 215
Query 63 N 63
N
Sbjct 216 N 216
>P49314 31 kDa ribonucleoprotein, chloroplastic [Nicotiana plumbaginifolia]
Length=292
Score = 58.9 bits (141), Expect = 6e-15
Identities = 32/79 (41%), Positives = 44/79 (56%), Gaps = 0/79 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
++ V NL V + L ELF G V +V D+ +G+S+GFGFV A+E AI
Sbjct 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268
Query 62 LNTFKVKGAGIRVKAADEQ 80
LN + G IRV AA+E+
Sbjct 269 LNGIDLDGRSIRVSAAEER 287
Score = 52.0 bits (123), Expect = 2e-12
Identities = 29/86 (34%), Positives = 44/86 (51%), Gaps = 0/86 (0%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
+K+ V NL SV L LF+ G V ++ D+ +G+S+GFGFV M E A +
Sbjct 88 LKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQ 147
Query 61 GLNTFKVKGAGIRVKAADEQNNQNNA 86
N +++ G IRV A + N+
Sbjct 148 QFNGYEIDGRAIRVNAGPAPAKRENS 173
Score = 16.5 bits (31), Expect = 6.3
Identities = 12/51 (24%), Positives = 16/51 (31%), Gaps = 0/51 (0%)
Query 22 QPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGLNTFKVKGAGI 72
+PF S + L E P E +K G F V A +
Sbjct 54 KPFESSFSTRVALSDFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAAL 104
>Q86U06 Probable RNA-binding protein 23 [Homo sapiens]
Length=439
Score = 58.5 bits (140), Expect = 1e-14
Identities = 28/80 (35%), Positives = 50/80 (63%), Gaps = 0/80 (0%)
Query 1 MKILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIK 60
M++ V +L ++TE L +F+PFG++ + L+ D TG+SKG+GF+ + A +A++
Sbjct 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query 61 GLNTFKVKGAGIRVKAADEQ 80
LN F++ G +RV E+
Sbjct 323 QLNGFELAGRPMRVGHVTER 342
Score = 33.9 bits (76), Expect = 5e-06
Identities = 20/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ L + ++L + F G+V ++ D+ + +SKG +VE + AI GL
Sbjct 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 226
Query 63 NTFKVKGAGIRVKAADEQNNQ 83
++ G I V+A+ + N+
Sbjct 227 TGQRLLGVPIIVQASQAEKNR 247
>P19683 31 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris]
Length=315
Score = 58.2 bits (139), Expect = 1e-14
Identities = 30/83 (36%), Positives = 48/83 (58%), Gaps = 0/83 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V N+ + + L +LF G+V S +V D++TG+S+GFGFV M E AI
Sbjct 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query 62 LNTFKVKGAGIRVKAADEQNNQN 84
L+ + G IRV A++++ +N
Sbjct 291 LDGQSLDGRTIRVNVAEDRSRRN 313
Score = 48.5 bits (114), Expect = 4e-11
Identities = 27/76 (36%), Positives = 40/76 (53%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
K+ V NL V + L LF+ G V ++ ++ T +S+GFGFV M EA KA++
Sbjct 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query 62 LNTFKVKGAGIRVKAA 77
N + V G + V A
Sbjct 197 YNRYDVNGRLLTVNKA 212
>P19682 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris]
Length=276
Score = 57.8 bits (138), Expect = 2e-14
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 0/83 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
+I V N+ + + L ++F G+V S +V D+++G+S+GFGFV M E +AI
Sbjct 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query 62 LNTFKVKGAGIRVKAADEQNNQN 84
L+ + G IRV AA+E+ +N
Sbjct 252 LDGQTLDGRTIRVNAAEERPRRN 274
Score = 47.8 bits (112), Expect = 6e-11
Identities = 25/76 (33%), Positives = 42/76 (55%), Gaps = 0/76 (0%)
Query 2 KILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKG 61
K+ V NL + + L +LFQ G V ++ +++T +S+GFGFV M EA KA++
Sbjct 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query 62 LNTFKVKGAGIRVKAA 77
+ + + G + V A
Sbjct 158 YSQYDLNGRLLTVNKA 173
>Q12926 ELAV-like protein 2 [Homo sapiens]
Length=359
Score = 57.8 bits (138), Expect = 2e-14
Identities = 32/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V L +++T++EL +LF +G++ + +++DQ TG S+G GF+ EA +AIKGL
Sbjct 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query 63 NTFKVKGA--GIRVKAADEQNNQNN 85
N K GA I VK A+ + + N
Sbjct 187 NGQKPPGATEPITVKFANNPSQKTN 211
Score = 56.6 bits (135), Expect = 5e-14
Identities = 29/75 (39%), Positives = 47/75 (63%), Gaps = 0/75 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
++V L +++T++EL LF G++ SC LV D+ TG+S G+GFV ++A KAI L
Sbjct 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query 63 NTFKVKGAGIRVKAA 77
N +++ I+V A
Sbjct 101 NGLRLQTKTIKVSYA 115
Score = 51.2 bits (121), Expect = 4e-12
Identities = 31/83 (37%), Positives = 43/83 (52%), Gaps = 3/83 (4%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
I V NL E L ++F PFG V + ++ D T K KGFGFV M + EA AI L
Sbjct 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query 63 NTFKVKGAGIRVKAADEQNNQNN 85
N +++ G RV + N+ +
Sbjct 338 NGYRL---GDRVLQVSFKTNKTH 357
>Q60899 ELAV-like protein 2 [Mus musculus]
Length=360
Score = 57.8 bits (138), Expect = 2e-14
Identities = 32/85 (38%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
+ V L +++T++EL +LF +G++ + +++DQ TG S+G GF+ EA +AIKGL
Sbjct 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query 63 NTFKVKGA--GIRVKAADEQNNQNN 85
N K GA I VK A+ + + N
Sbjct 187 NGQKPPGATEPITVKFANNPSQKTN 211
Score = 56.6 bits (135), Expect = 5e-14
Identities = 29/75 (39%), Positives = 47/75 (63%), Gaps = 0/75 (0%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
++V L +++T++EL LF G++ SC LV D+ TG+S G+GFV ++A KAI L
Sbjct 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query 63 NTFKVKGAGIRVKAA 77
N +++ I+V A
Sbjct 101 NGLRLQTKTIKVSYA 115
Score = 51.2 bits (121), Expect = 4e-12
Identities = 31/83 (37%), Positives = 43/83 (52%), Gaps = 3/83 (4%)
Query 3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL 62
I V NL E L ++F PFG V + ++ D T K KGFGFV M + EA AI L
Sbjct 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query 63 NTFKVKGAGIRVKAADEQNNQNN 85
N +++ G RV + N+ +
Sbjct 339 NGYRL---GDRVLQVSFKTNKTH 358
Lambda K H a alpha
0.324 0.137 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 527575
Database: a77c7af233b02da693991756e481b62b.SwissProt.fasta
Posted date: May 9, 2024 5:42 PM
Number of letters in database: 12,145
Number of sequences in database: 23
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
