BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1d067084e246df7321f88a914cc84e02.SwissProt.fasta
30 sequences; 5,865 total letters
Query= ACIAD0504
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus... 51.6 2e-11
Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus... 51.6 2e-11
Q7A3C7 HTH-type transcriptional regulator SA2364 [Staphylococcus ... 49.7 8e-11
Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococc... 49.7 8e-11
Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus ... 49.7 8e-11
Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus... 49.7 8e-11
Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylo... 49.7 8e-11
A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacteriu... 49.7 1e-10
Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional r... 47.4 5e-10
Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional r... 47.4 5e-10
Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional r... 47.4 5e-10
A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional r... 47.4 5e-10
Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional r... 47.4 5e-10
P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri] 47.4 7e-10
P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli ... 47.4 7e-10
P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli ... 47.4 7e-10
P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrh... 47.0 9e-10
P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus au... 46.6 1e-09
P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus ha... 46.6 1e-09
P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus au... 46.6 1e-09
Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional r... 45.8 2e-09
Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional r... 45.8 2e-09
P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri] 45.4 3e-09
P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli ... 45.4 3e-09
P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli ... 45.4 3e-09
P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli ... 45.4 3e-09
P51561 Tetracycline repressor protein class H [Pasteurella multoc... 44.7 5e-09
P03039 Tetracycline repressor protein class C [Escherichia coli] 43.9 1e-08
P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli (s... 43.9 1e-08
P03038 Tetracycline repressor protein class A from transposon 172... 43.1 2e-08
>Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus
aureus (strain bovine RF122 / ET3-1)]
Length=185
Score = 51.6 bits (122), Expect = 2e-11
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 38/152 (25%)
Query 7 LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI----------- 55
++ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 6 IENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCFYVIQRDLNT 65
Query 56 ----IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQ 97
K++ + Y + E++ + D LL N+K+R++Q
Sbjct 66 FITQFKQIKDDYHSD-YEVMKVSLDYLLQFKIDNKTLLHCIEAGNNKLRFYQSAF----- 119
Query 98 YRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
Y+ L Y L +++DD I+ KF ++ Q
Sbjct 120 YQELFDFYYDLFKSDDD---IFTKFKTDMLLQ 148
>Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus
aureus (strain MRSA252)]
Length=185
Score = 51.6 bits (122), Expect = 2e-11
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDHKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD IY KF ++ Q
Sbjct 121 QELFYFYYDLFKSDDD---IYTKFKTDMLLQ 148
>Q7A3C7 HTH-type transcriptional regulator SA2364 [Staphylococcus
aureus (strain N315)]
Length=185
Score = 49.7 bits (117), Expect = 8e-11
Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD Y KF ++ Q
Sbjct 121 QELFDFYYDLFKSDDD---TYTKFKTDMLLQ 148
>Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococcus
aureus (strain COL)]
Length=185
Score = 49.7 bits (117), Expect = 8e-11
Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD Y KF ++ Q
Sbjct 121 QELFDFYYDLFKSDDD---TYTKFKTDMLLQ 148
>Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus
aureus (strain MW2)]
Length=185
Score = 49.7 bits (117), Expect = 8e-11
Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD Y KF ++ Q
Sbjct 121 QELFDFYYDLFKSDDD---TYTKFKTDMLLQ 148
>Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus
aureus (strain Mu50 / ATCC 700699)]
Length=185
Score = 49.7 bits (117), Expect = 8e-11
Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD Y KF ++ Q
Sbjct 121 QELFDFYYDLFKSDDD---TYTKFKTDMLLQ 148
>Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylococcus
aureus (strain NCTC 8325 / PS 47)]
Length=185
Score = 49.7 bits (117), Expect = 8e-11
Identities = 40/151 (26%), Positives = 69/151 (46%), Gaps = 38/151 (25%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEI------------ 55
+ + RI +I+ +LF+E G +++ N IA ELGI G LY HF++K ++
Sbjct 7 ENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIF 66
Query 56 ---IKELMEHYQKETLEMLALPEDRLLN--------------ANDKIRYFQVLSGQLWQY 98
K++ + Y E++ + D LL N+K+R++Q Y
Sbjct 67 ITHFKQIKDDYH-SNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAF-----Y 120
Query 99 RFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
+ L Y L +++DD Y KF ++ Q
Sbjct 121 QELFDFYYDLFKSDDD---TYTKFKTDMLLQ 148
>A0R4Z6 HTH-type transcriptional repressor KstR2 [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=205
Score = 49.7 bits (117), Expect = 1e-10
Identities = 19/60 (32%), Positives = 40/60 (67%), Gaps = 0/60 (0%)
Query 4 SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHY 63
S+ +D +LQ++ +F +RG ++ T IA GI G+LY+HF++K+++++E++ +
Sbjct 7 SQPASRRDELLQLAATMFADRGLKATTVRDIADSAGILSGSLYHHFKSKEQMVEEVLRDF 66
>Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain MRSA252)]
Length=186
Score = 47.4 bits (111), Expect = 5e-10
Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE 69
KD+I+ ++ LF+E+G T + IA + I +LYYHF +K+ I ++ ++
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN 61
Query 70 MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
++ + +++ + D + +Q L ++ + +Y + N + +F+G + Q
Sbjct 62 IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ 113
Query 130 GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH 179
Q + Q+ F D +KMT + + LI+ + L +W +F G + +S
Sbjct 114 IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS 170
Query 180 LEEKWVWQALRQMVFLE 196
+ V+ L +FL+
Sbjct 171 QFKDEVYSLLN--IFLK 185
>Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain N315)]
Length=186
Score = 47.4 bits (111), Expect = 5e-10
Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE 69
KD+I+ ++ LF+E+G T + IA + I +LYYHF +K+ I ++ ++
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN 61
Query 70 MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
++ + +++ + D + +Q L ++ + +Y + N + +F+G + Q
Sbjct 62 IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ 113
Query 130 GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH 179
Q + Q+ F D +KMT + + LI+ + L +W +F G + +S
Sbjct 114 IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS 170
Query 180 LEEKWVWQALRQMVFLE 196
+ V+ L +FL+
Sbjct 171 QFKDEVYSLLN--IFLK 185
>Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Mu50 / ATCC
700699)]
Length=186
Score = 47.4 bits (111), Expect = 5e-10
Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE 69
KD+I+ ++ LF+E+G T + IA + I +LYYHF +K+ I ++ ++
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN 61
Query 70 MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
++ + +++ + D + +Q L ++ + +Y + N + +F+G + Q
Sbjct 62 IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ 113
Query 130 GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH 179
Q + Q+ F D +KMT + + LI+ + L +W +F G + +S
Sbjct 114 IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS 170
Query 180 LEEKWVWQALRQMVFLE 196
+ V+ L +FL+
Sbjct 171 QFKDEVYSLLN--IFLK 185
>A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Newman)]
Length=186
Score = 47.4 bits (111), Expect = 5e-10
Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE 69
KD+I+ ++ LF+E+G T + IA + I +LYYHF +K+ I ++ ++
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN 61
Query 70 MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
++ + +++ + D + +Q L ++ + +Y + N + +F+G + Q
Sbjct 62 IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ 113
Query 130 GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH 179
Q + Q+ F D +KMT + + LI+ + L +W +F G + +S
Sbjct 114 IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS 170
Query 180 LEEKWVWQALRQMVFLE 196
+ V+ L +FL+
Sbjct 171 QFKDEVYSLLN--IFLK 185
>Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain NCTC 8325 /
PS 47)]
Length=186
Score = 47.4 bits (111), Expect = 5e-10
Identities = 44/197 (22%), Positives = 92/197 (47%), Gaps = 23/197 (12%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETLE 69
KD+I+ ++ LF+E+G T + IA + I +LYYHF +K+ I ++ ++
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNN 61
Query 70 MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDDFKKIYPKFAGQVMQQ 129
++ + +++ + D + +Q L ++ + +Y + N + +F+G + Q
Sbjct 62 IIMMNQNKSNYSIDAL--YQFLFEFIFDIEERYIRMYVQLSNTPE------EFSGNIYGQ 113
Query 130 GQKIYQA-------FVDAGLMKMTTSEIEALIINLWIVLTNW---TNFLYMSGHISDSNH 179
Q + Q+ F D +KMT + + LI+ + L +W +F G + +S
Sbjct 114 IQDLNQSLSKEIAKFYDESKIKMTKEDFQNLIL---LFLESWYLKASFSQKFGAVEESKS 170
Query 180 LEEKWVWQALRQMVFLE 196
+ V+ L +FL+
Sbjct 171 QFKDEVYSLLN--IFLK 185
>P0ACT1 HTH-type transcriptional regulator AcrR [Shigella flexneri]
Length=215
Score = 47.4 bits (111), Expect = 7e-10
Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
+T+ IL ++L+LF+++G S + IA G++ G +Y+HF++K ++ E+ E
Sbjct 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>P0ACT0 HTH-type transcriptional regulator AcrR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=215
Score = 47.4 bits (111), Expect = 7e-10
Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
+T+ IL ++L+LF+++G S + IA G++ G +Y+HF++K ++ E+ E
Sbjct 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>P0ACS9 HTH-type transcriptional regulator AcrR [Escherichia coli
(strain K12)]
Length=215
Score = 47.4 bits (111), Expect = 7e-10
Identities = 18/54 (33%), Positives = 36/54 (67%), Gaps = 0/54 (0%)
Query 8 KTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
+T+ IL ++L+LF+++G S + IA G++ G +Y+HF++K ++ E+ E
Sbjct 11 ETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYWHFKDKSDLFSEIWE 64
>P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrhoeae]
Length=210
Score = 47.0 bits (110), Expect = 9e-10
Identities = 19/58 (33%), Positives = 36/58 (62%), Gaps = 0/58 (0%)
Query 4 SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
++ LKTK+ ++ +L+ F +G + N IA G++ G LY+HF+NK+++ L +
Sbjct 6 TEALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQ 63
>P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus
aureus (strain Mu50 / ATCC 700699)]
Length=188
Score = 46.6 bits (109), Expect = 1e-09
Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)
Query 7 LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE 66
+ KD+IL ++ +LF + G + TT I S GNLYYHF+ K+ + E++ + +
Sbjct 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK 60
Query 67 TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ 125
E + + +K + LS L + Y+ ++N +F Y K
Sbjct 61 WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS 111
Query 126 VMQQGQKIYQAFVDA 140
+ ++ K+ ++DA
Sbjct 112 INEKMNKLENKYIDA 126
>P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus
haemolyticus]
Length=188
Score = 46.6 bits (109), Expect = 1e-09
Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)
Query 7 LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE 66
+ KD+IL ++ +LF + G + TT I S GNLYYHF+ K+ + E++ + +
Sbjct 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK 60
Query 67 TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ 125
E + + +K + LS L + Y+ ++N +F Y K
Sbjct 61 WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS 111
Query 126 VMQQGQKIYQAFVDA 140
+ ++ K+ ++DA
Sbjct 112 INEKMNKLENKYIDA 126
>P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus
aureus]
Length=188
Score = 46.6 bits (109), Expect = 1e-09
Identities = 33/135 (24%), Positives = 62/135 (46%), Gaps = 10/135 (7%)
Query 7 LKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKE 66
+ KD+IL ++ +LF + G + TT I S GNLYYHF+ K+ + E++ + +
Sbjct 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK 60
Query 67 TLEMLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENN-DDFKKIYPKFAGQ 125
E + + +K + LS L + Y+ ++N +F Y K
Sbjct 61 WQEQWKKEQIKCKTNREKFYLYNELS--------LTTEYYYPLQNAIIEFYTEYYK-TNS 111
Query 126 VMQQGQKIYQAFVDA 140
+ ++ K+ ++DA
Sbjct 112 INEKMNKLENKYIDA 126
>Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)]
Length=185
Score = 45.8 bits (107), Expect = 2e-09
Identities = 19/53 (36%), Positives = 35/53 (66%), Gaps = 0/53 (0%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH 62
KD+I+ ++ LF+E+G T + I+ + I +LYYH+ NK+EI ++ +E+
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN 54
>Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis]
Length=185
Score = 45.8 bits (107), Expect = 2e-09
Identities = 19/53 (36%), Positives = 35/53 (66%), Gaps = 0/53 (0%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH 62
KD+I+ ++ LF+E+G T + I+ + I +LYYH+ NK+EI ++ +E+
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN 54
>P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri]
Length=196
Score = 45.4 bits (106), Expect = 3e-09
Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 9 TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL 68
T+ RIL + ++F+E G S + I ISPG LY+HF +K+ +I+ ++ Q+ L
Sbjct 12 TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL 71
Query 69 EMLALP 74
P
Sbjct 72 ARFREP 77
>P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli
(strain K12)]
Length=196
Score = 45.4 bits (106), Expect = 3e-09
Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 9 TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL 68
T+ RIL + ++F+E G S + I ISPG LY+HF +K+ +I+ ++ Q+ L
Sbjct 12 TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL 71
Query 69 EMLALP 74
P
Sbjct 72 ARFREP 77
>P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=196
Score = 45.4 bits (106), Expect = 3e-09
Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 9 TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL 68
T+ RIL + ++F+E G S + I ISPG LY+HF +K+ +I+ ++ Q+ L
Sbjct 12 TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL 71
Query 69 EMLALP 74
P
Sbjct 72 ARFREP 77
>P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli
O157:H7]
Length=196
Score = 45.4 bits (106), Expect = 3e-09
Identities = 22/66 (33%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 9 TKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEHYQKETL 68
T+ RIL + ++F+E G S + I ISPG LY+HF +K+ +I+ ++ Q+ L
Sbjct 12 TRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQDQERAL 71
Query 69 EMLALP 74
P
Sbjct 72 ARFREP 77
>P51561 Tetracycline repressor protein class H [Pasteurella multocida]
Length=207
Score = 44.7 bits (104), Expect = 5e-09
Identities = 22/68 (32%), Positives = 40/68 (59%), Gaps = 1/68 (1%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELMEH-YQKETL 68
K++++ +L L NE G +TT ++A ++G+ LY+H +NK+ ++ L E QK
Sbjct 6 KEQVIDDALILLNEVGIEGLTTRNVAQKIGVEQPTLYWHVKNKRALLDALAETILQKHHH 65
Query 69 EMLALPED 76
+L LP +
Sbjct 66 HVLPLPNE 73
>P03039 Tetracycline repressor protein class C [Escherichia coli]
Length=219
Score = 43.9 bits (102), Expect = 1e-08
Identities = 17/52 (33%), Positives = 33/52 (63%), Gaps = 0/52 (0%)
Query 10 KDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
++ +++ +L+L N+ G +TT +A LG+ LY+HF+NK+ ++ L E
Sbjct 6 REAVIRTALELLNDVGMEGLTTRRLAERLGVQQPALYWHFKNKRALLDALAE 57
Score = 18.5 bits (36), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query 136 AFVDAGL--MKMTTSEIEAL 153
A + GL M++TT++IE L
Sbjct 195 ALIIGGLEKMRLTTNDIEVL 214
>P0ACT2 Probable acrEF/envCD operon repressor [Escherichia coli
(strain K12)]
Length=220
Score = 43.9 bits (102), Expect = 1e-08
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query 4 SKVLKTKDRILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKE--LME 61
++ LKT+ +++ ++ F + G T N IA ++ G +Y+HF NK ++ E L +
Sbjct 7 AEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYWHFENKTQLFNEMWLQQ 66
Query 62 HYQKETLE---MLALPEDRLLNANDKIRYFQVLSGQLWQYRFLHRDVYHLVENNDD 114
+E ++ L D +K+ ++ + + L + +YH E ND+
Sbjct 67 PSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAKIPRQQALLKILYHKCEFNDE 122
>P03038 Tetracycline repressor protein class A from transposon
1721 [Escherichia coli]
Length=216
Score = 43.1 bits (100), Expect = 2e-08
Identities = 19/49 (39%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
Query 13 ILQISLQLFNERGERSVTTNHIAAELGISPGNLYYHFRNKQEIIKELME 61
+++ +L L NE G +TT +A LG+ LY+HFRNK+ ++ L E
Sbjct 9 VIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHFRNKRALLDALAE 57
Lambda K H a alpha
0.323 0.137 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 845370
Database: 1d067084e246df7321f88a914cc84e02.SwissProt.fasta
Posted date: May 20, 2024 3:46 AM
Number of letters in database: 5,865
Number of sequences in database: 30
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40