BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: cbcf914b05d6172c36a42856dcfd79da.SwissProt.fasta
5 sequences; 938 total letters
Query= ACIAD0570
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
B6J0F8 Inner membrane-spanning protein YciB [Coxiella burnetii (s... 50.4 4e-12
Q82Y34 Inner membrane-spanning protein YciB [Nitrosomonas europae... 45.8 2e-10
Q2Y767 Inner membrane-spanning protein YciB [Nitrosospira multifo... 44.7 4e-10
Q0ADQ5 Inner membrane-spanning protein YciB [Nitrosomonas eutroph... 44.3 6e-10
Q31G96 Inner membrane-spanning protein YciB [Hydrogenovibrio crun... 40.8 1e-08
>B6J0F8 Inner membrane-spanning protein YciB [Coxiella burnetii
(strain CbuG_Q212)]
Length=181
Score = 50.4 bits (119), Expect = 4e-12
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (5%)
Query 1 MNSLFKWIIAICF-IAYPFIVGWSLAHGHFYVASLLLIGIGLIRFLSKSNSLLWPLTAFA 59
M LF + ICF +AY F G +A V S L + I IRF + L F
Sbjct 1 MKFLFDYFPIICFFVAYKFW-GIYIATAAAMVVSALQVAIYWIRFRRFEKFHVITLI-FI 58
Query 60 VLCGSLSLILNDHAWLKVYPVLMS-LGAFCIFASTLWRPPSMIERFARIMEPDLPESGVQ 118
+L GS +L+ ++ ++K P ++ + A +F S + +++ R + + +LP
Sbjct 59 LLLGSFTLVFHNAIFIKWKPTIVYWIFAIVLFGSHFFGKHTLVHRMLK-EKIELPAK--T 115
Query 119 WTRKVTMIWCGFFLINASIAWCTVIWMSTQIWVIYNGFISYVLMGILLLGE-FILRKRYR 177
W+R + + W FFLI + V T WV + F + VLM + +LG+ F + + +
Sbjct 116 WSR-LNLSWALFFLILGVLNLFVVYNFDTNTWVNFKLFGTLVLMLVFILGQAFYIARHAQ 174
Query 178 RLHHN 182
L N
Sbjct 175 NLKMN 179
>Q82Y34 Inner membrane-spanning protein YciB [Nitrosomonas europaea
(strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)]
Length=181
Score = 45.8 bits (107), Expect = 2e-10
Identities = 47/181 (26%), Positives = 79/181 (44%), Gaps = 18/181 (10%)
Query 1 MNSLFKWIIAICFIAYPFIVGWSLAHGHFYVASLLLIGIGLIRFLSKSNSLLWPLTAFAV 60
M LF I F + G A +A+ + IG +R K +++LW A V
Sbjct 1 MKFLFDLFPVILFFITYKVYGIYNATAVAIIATFVQIGWVWLRH-RKVDNMLWVSLAIIV 59
Query 61 LCGSLSLILNDHAWLKVYPVLMSLGAFCIFASTLWRPPSMIER-FARIMEPD---LPESG 116
+ G +LI D ++K P ++ + +FA+ L+ + E+ R+M D LPE
Sbjct 60 VFGGATLIFQDETFIKWKPTVL----YWLFAAVLFLANQIFEKNLIRVMMKDQIRLPEP- 114
Query 117 VQWTRKVTMIWCGFFLINASIAWCTVIWMSTQIWVIYNGF------ISYVLMGILLLGEF 170
W R + W FF + I ST WV + F ++V++ +LLG++
Sbjct 115 -VWPR-LNASWAVFFSVMGIINLYVAYNYSTDTWVNFKLFGFMGLMFAFVILQAILLGKY 172
Query 171 I 171
+
Sbjct 173 V 173
>Q2Y767 Inner membrane-spanning protein YciB [Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849 / C 71)]
Length=181
Score = 44.7 bits (104), Expect = 4e-10
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 19/151 (13%)
Query 30 YVASLLLIG-----IGLIRFL-SKSNSLLWPLTAFAVLCGSLSLILNDHAWLKVYPVLMS 83
Y A+ + IG IG + F K +++LW V+ GS +LIL D ++K P ++
Sbjct 23 YAATAVAIGATFAQIGWVWFRHGKVDTMLWVSLVLIVVFGSATLILQDETFIKWKPSVL- 81
Query 84 LGAFCIFASTLWRPPSMIER-FARIMEPD---LPESGVQWTRKVTMIWCGFFLINASIAW 139
+ +FA+ L ++ ++ F R M + LPE W R V W FF +
Sbjct 82 ---YWLFAAALLIAQAIFKKNFIRTMMKEQLTLPEP--VWAR-VNASWAAFFAFMGAANL 135
Query 140 CTVIWMSTQIWVIYN--GFISYVLMGILLLG 168
ST+ WV + GF+ +L+ ++L G
Sbjct 136 YVAFNYSTETWVNFKLFGFMGLMLVFVVLQG 166
>Q0ADQ5 Inner membrane-spanning protein YciB [Nitrosomonas eutropha
(strain DSM 101675 / C91 / Nm57)]
Length=181
Score = 44.3 bits (103), Expect = 6e-10
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query 1 MNSLFKWIIAICFIAYPFIVGWSLAHGHFYVASLLLIGIGLIRFLSKSNSLLWPLTAFAV 60
M LF I F A I G A VA+ IG +R K +++LW A +
Sbjct 1 MKFLFDLFPIILFFATYKIYGIYSATAVAIVATFAQIGWVWLRH-RKVDNMLWVSLAIII 59
Query 61 LCGSLSLILNDHAWLKVYPVLMSLGAFCIFASTLWRPPSMI-ERFARIMEPD---LPESG 116
+ G +LIL D ++K P ++ + +FA L+ S + R M D LPE
Sbjct 60 VFGGATLILQDETFIKWKPTVL----YWLFAVILFLAHSFFGKNLIRAMMKDQIKLPEP- 114
Query 117 VQWTRKVTMIWCGFFLINASIAWCTVIWMSTQIWVIYNGFISYVLMGILLLGEFILRKRY 176
W R + + W FF ++ ST WV + F LM + ++ + +L +Y
Sbjct 115 -VWVR-LNISWSVFFGAMGALNLYVAYNYSTDTWVNFKLFGFMGLMFVFIILQALLLGKY 172
Query 177 RRLHHNDEQSL 187
+ ND Q +
Sbjct 173 --MEKNDNQKI 181
>Q31G96 Inner membrane-spanning protein YciB [Hydrogenovibrio
crunogenus (strain DSM 25203 / XCL-2)]
Length=214
Score = 40.8 bits (94), Expect = 1e-08
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 10/174 (6%)
Query 18 FIVGWSLAHGHFYVASLLLIGIGLIRFLSKSNSLLWPL----TAFAVLCGSLSLILNDHA 73
F + + L + A ++ I + ++ N + + A V+ G +LIL D
Sbjct 13 FFIAFKLYGIYVATAVAIIASIAQVAYVYAKNKRIEKMHIITLALIVILGGATLILQDET 72
Query 74 WLKVYPVLMSLGAFCIFASTLWRPPSMIERFARIMEPDLPESGVQWTRKVTMIWCGFFLI 133
++K P +++ G +F + + I R R+M+ + W K++ +W FF+
Sbjct 73 FIKWKPTVVNWGFALVFLGSHFIGQKPIIR--RMMDQAISLPDTAWI-KLSYMWIAFFIF 129
Query 134 NASIAWCTVIWMSTQIWVIYN--GFISYVLMGILLLGEFILR-KRYRRLHHNDE 184
+ T WV + G + L IL+ G +I R + L NDE
Sbjct 130 SGIANIYVAYQYDTDTWVNFKLFGLMGLTLAFILIQGVYISRFIKSSDLDKNDE 183
Lambda K H a alpha
0.335 0.145 0.506 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 125292
Database: cbcf914b05d6172c36a42856dcfd79da.SwissProt.fasta
Posted date: May 9, 2024 6:53 AM
Number of letters in database: 938
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
