Comparative Genomics

ACIAD0584 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 927bff5a4fc2369750eb9bde3e11b5f2.TrEMBL.fasta
           12 sequences; 1,728 total letters



Query= ACIAD0584

Length=145
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FEK0 Excinuclease [Acinetobacter baylyi (strain ATCC 33305 / BD...  285     8e-105
A0A7G2SDH3 Excinuclease [Acinetobacter sp]                            285     8e-105
A0A3D2SR56 Excinuclease [Acinetobacter ursingii]                      236     3e-85 
N9DHP0 Excinuclease ATPase subunit [Acinetobacter ursingii ANC 3649]  235     4e-85 
A0A3R9DT77 Excinuclease [Acinetobacter sp. FDAARGOS_515]              230     4e-83 
A0A3D2SPH1 Excinuclease [Acinetobacter ursingii]                      228     2e-82 
A0A009ZKC1 Putative phosphoribosylglycinamide formyltransferase [...  228     2e-82 
A0A1Y3D8K6 Excinuclease [Acinetobacter sp. ANC 4973]                  228     4e-82 
A0A3A8F1D3 Excinuclease [Acinetobacter guerrae]                       227     9e-82 
A0A1H3JXD2 Excinuclease [Acinetobacter kyonggiensis]                  226     2e-81 
A0A4R0FAV1 Excinuclease [Acinetobacter sp. ANC 3781]                  223     3e-80 
A0A8G2J9W1 Excinuclease [Acinetobacter terrestris]                    223     3e-80 


>Q6FEK0 Excinuclease [Acinetobacter baylyi (strain ATCC 33305 
/ BD413 / ADP1)]
Length=144

 Score = 285 bits (729),  Expect = 8e-105
 Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK
Sbjct  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS
Sbjct  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            TTTYECHKGTAVAGVALKGDIVKF
Sbjct  121  TTTYECHKGTAVAGVALKGDIVKF  144


>A0A7G2SDH3 Excinuclease [Acinetobacter sp]
Length=144

 Score = 285 bits (729),  Expect = 8e-105
 Identities = 144/144 (100%), Positives = 144/144 (100%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK
Sbjct  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS
Sbjct  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            TTTYECHKGTAVAGVALKGDIVKF
Sbjct  121  TTTYECHKGTAVAGVALKGDIVKF  144


>A0A3D2SR56 Excinuclease [Acinetobacter ursingii]
Length=144

 Score = 236 bits (601),  Expect = 3e-85
 Identities = 115/144 (80%), Positives = 130/144 (90%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+Q ++AVLC+G MG  QAAD VH+LDFK+AV+RAVADG LDGSVKFYL+GTKSGG+
Sbjct  1    MSLKKQFSLAVLCMGLMGTVQAADQVHDLDFKAAVDRAVADGALDGSVKFYLSGTKSGGR  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q GIVTNKKTNGF KSAE +CDWVLRSALIQLQNAAKAKG NAVTNIVSY+KSNE KS
Sbjct  61   VLQQGIVTNKKTNGFAKSAETSCDWVLRSALIQLQNAAKAKGGNAVTNIVSYFKSNEAKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            +TTY+C+KG AVA VALKGDIVKF
Sbjct  121  STTYQCYKGMAVASVALKGDIVKF  144


>N9DHP0 Excinuclease ATPase subunit [Acinetobacter ursingii ANC 
3649]
Length=144

 Score = 235 bits (600),  Expect = 4e-85
 Identities = 115/144 (80%), Positives = 130/144 (90%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+Q ++AVLC+G MG  QAAD VH+LDFK+AV+RAVADG LDGSVKFYL+GTKSGG+
Sbjct  1    MSLKKQFSLAVLCMGLMGTVQAADQVHDLDFKAAVDRAVADGALDGSVKFYLSGTKSGGR  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q GIVTNKKTNGF KSAE +CDWVLRSALIQLQ+AAKAKG NAVTNIVSY+KSNE KS
Sbjct  61   VLQQGIVTNKKTNGFAKSAETSCDWVLRSALIQLQSAAKAKGGNAVTNIVSYFKSNEAKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            TTTY+C+KG AVA VALKGDIVKF
Sbjct  121  TTTYQCYKGMAVASVALKGDIVKF  144


>A0A3R9DT77 Excinuclease [Acinetobacter sp. FDAARGOS_515]
Length=144

 Score = 230 bits (587),  Expect = 4e-83
 Identities = 112/144 (78%), Positives = 128/144 (89%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+Q ++AVLC+G MG  QAAD VH+LDFK+AV+RAVADG LDGSVKFYL+GTKSGG+
Sbjct  1    MSLKKQFSLAVLCMGLMGTVQAADQVHDLDFKAAVDRAVADGALDGSVKFYLSGTKSGGR  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q GIVTNKKTNGF KSAE +CDWVLRSALIQLQ+AAKAKG NAVTNIVSY+KSNE K+
Sbjct  61   VLQQGIVTNKKTNGFAKSAETSCDWVLRSALIQLQSAAKAKGGNAVTNIVSYFKSNEAKN  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
             TTY+C+KG AV  VALKGDIVKF
Sbjct  121  RTTYQCYKGMAVTSVALKGDIVKF  144


>A0A3D2SPH1 Excinuclease [Acinetobacter ursingii]
Length=144

 Score = 228 bits (582),  Expect = 2e-82
 Identities = 114/144 (79%), Positives = 128/144 (89%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+QL+ AVLC+G MG  QAAD VH+LDFK+AV+RAVADGTLDGSVKFYL+GTKSGGK
Sbjct  1    MSLKKQLSFAVLCMGLMGTVQAADQVHDLDFKAAVDRAVADGTLDGSVKFYLSGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q G VTNKKTNGF KSAE++CD VLRSALIQLQ+AAKAKG NAVTNIVSY+KSNE KS
Sbjct  61   VLQQGAVTNKKTNGFAKSAESSCDRVLRSALIQLQSAAKAKGGNAVTNIVSYFKSNEAKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
             TTY+C+KG AV  VALKGDIVKF
Sbjct  121  RTTYQCYKGMAVTSVALKGDIVKF  144


>A0A009ZKC1 Putative phosphoribosylglycinamide formyltransferase 
[Acinetobacter sp. 479375]
Length=144

 Score = 228 bits (582),  Expect = 2e-82
 Identities = 114/144 (79%), Positives = 128/144 (89%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+QL+ AVLC+G MG  QAAD VH+LDFK+AV+RAVADGTLDGSVKFYL+GTKSGGK
Sbjct  1    MSLKKQLSFAVLCMGLMGTVQAADQVHDLDFKAAVDRAVADGTLDGSVKFYLSGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q G VTNKKTNGF KSAE++CD VLRSALIQLQ+AAKAKG NAVTNIVSY+KSNE KS
Sbjct  61   VLQQGAVTNKKTNGFAKSAESSCDRVLRSALIQLQSAAKAKGGNAVTNIVSYFKSNEAKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
             TTY+C+KG AV  VALKGDIVKF
Sbjct  121  RTTYQCYKGMAVTSVALKGDIVKF  144


>A0A1Y3D8K6 Excinuclease [Acinetobacter sp. ANC 4973]
Length=144

 Score = 228 bits (580),  Expect = 4e-82
 Identities = 117/144 (81%), Positives = 127/144 (88%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M +K+ +  AVL LGA+ AAQAAD  HNLDFKSAVERAVADGTLDGSVKFYL GTKSGGK
Sbjct  1    MFMKKIVLTAVLSLGAVVAAQAADTAHNLDFKSAVERAVADGTLDGSVKFYLAGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q G VTNKKTNGF KSAE ACD VLRSALIQLQN AKAKGANAVTNIVSY+KSNE+KS
Sbjct  61   VLQKGAVTNKKTNGFAKSAETACDHVLRSALIQLQNTAKAKGANAVTNIVSYFKSNESKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            +TTY+C KGTAVA VALKGD+VKF
Sbjct  121  STTYQCFKGTAVASVALKGDLVKF  144


>A0A3A8F1D3 Excinuclease [Acinetobacter guerrae]
Length=144

 Score = 227 bits (578),  Expect = 9e-82
 Identities = 112/144 (78%), Positives = 128/144 (89%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M LK+Q ++AVLC+G MG  QAAD VH+ DFK+AV+RAVADGTLDGSVKFYL+GTKSGGK
Sbjct  1    MSLKKQFSLAVLCMGLMGTVQAADQVHDFDFKTAVDRAVADGTLDGSVKFYLSGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q G VTNKKTNGF KSAE++CD VLRSALIQLQ+AAKAKG NAVTNIVSY+KSNE KS
Sbjct  61   VLQQGAVTNKKTNGFAKSAESSCDRVLRSALIQLQSAAKAKGGNAVTNIVSYFKSNEAKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            +TTY+C+KG AV  VALKGDIVKF
Sbjct  121  STTYQCYKGMAVTSVALKGDIVKF  144


>A0A1H3JXD2 Excinuclease [Acinetobacter kyonggiensis]
Length=144

 Score = 226 bits (576),  Expect = 2e-81
 Identities = 116/144 (81%), Positives = 127/144 (88%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            M +K+ +  AVL LGA+ AAQAAD  HNLDFKSAVERAVADGTLDGSVKFYL GTKSGGK
Sbjct  1    MFMKKIVLTAVLSLGAVVAAQAADTAHNLDFKSAVERAVADGTLDGSVKFYLAGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q G VTNKKTNGF KSAE ACD VLRSALIQLQN AKAKGANAVTNIVSY+KSNE++S
Sbjct  61   VLQKGAVTNKKTNGFAKSAETACDHVLRSALIQLQNTAKAKGANAVTNIVSYFKSNESQS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            +TTY+C KGTAVA VALKGD+VKF
Sbjct  121  STTYQCFKGTAVASVALKGDLVKF  144


>A0A4R0FAV1 Excinuclease [Acinetobacter sp. ANC 3781]
Length=144

 Score = 223 bits (568),  Expect = 3e-80
 Identities = 114/144 (79%), Positives = 124/144 (86%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            ML+K+   IA LC G + +AQAAD  HNLDFKSAVERAVADGTLDGSVKFYL GTKSGGK
Sbjct  1    MLIKKLTLIAALCFGGLVSAQAADTAHNLDFKSAVERAVADGTLDGSVKFYLAGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            VIQ   VTNKKTNGF KSAE ACD VLRSALIQLQN AKA+GANAVTNIVSY+KSNE+KS
Sbjct  61   VIQKDAVTNKKTNGFAKSAETACDHVLRSALIQLQNTAKAQGANAVTNIVSYFKSNESKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            TTTY+C KG AVA VALKG++VKF
Sbjct  121  TTTYQCFKGMAVASVALKGNLVKF  144


>A0A8G2J9W1 Excinuclease [Acinetobacter terrestris]
Length=144

 Score = 223 bits (568),  Expect = 3e-80
 Identities = 114/144 (79%), Positives = 125/144 (87%), Gaps = 0/144 (0%)

Query  1    MLLKQQLTIAVLCLGAMGAAQAADNVHNLDFKSAVERAVADGTLDGSVKFYLNGTKSGGK  60
            ML+K+    A LCLG + +AQAAD VHNLDFKSAVERAVADGTLDGSVKFYL GTKSGGK
Sbjct  1    MLMKKLTLTAALCLGGVISAQAADTVHNLDFKSAVERAVADGTLDGSVKFYLAGTKSGGK  60

Query  61   VIQPGIVTNKKTNGFGKSAENACDWVLRSALIQLQNAAKAKGANAVTNIVSYYKSNETKS  120
            V+Q   VTNKKTNGF KSAE ACD VLRSALIQLQN+AKA+GAN+VTNIVSY+KSNETKS
Sbjct  61   VLQKDAVTNKKTNGFAKSAETACDHVLRSALIQLQNSAKAQGANSVTNIVSYFKSNETKS  120

Query  121  TTTYECHKGTAVAGVALKGDIVKF  144
            TTTY+C KG AVA VALK D+VKF
Sbjct  121  TTTYQCFKGMAVASVALKADLVKF  144



Lambda      K        H        a         alpha
   0.318    0.131    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 151872


  Database: 927bff5a4fc2369750eb9bde3e11b5f2.TrEMBL.fasta
    Posted date:  May 20, 2024  4:28 AM
  Number of letters in database: 1,728
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40