BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fd3454e1177083ce40b3152e0c754155.SwissProt.fasta
3 sequences; 2,052 total letters
Query= ACIAD0618
Length=116
Score E
Sequences producing significant alignments: (Bits) Value
P64535 Nickel/cobalt homeostasis protein RcnB [Escherichia coli O... 46.6 2e-11
P64534 Nickel/cobalt homeostasis protein RcnB [Escherichia coli (... 46.6 2e-11
O14647 Chromodomain-helicase-DNA-binding protein 2 [Homo sapiens] 33.5 3e-06
>P64535 Nickel/cobalt homeostasis protein RcnB [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=112
Score = 46.6 bits (109), Expect = 2e-11
Identities = 17/51 (33%), Positives = 28/51 (55%), Gaps = 0/51 (0%)
Query 61 RKGDRLPPEFRHHRYHVDNWRAHRLHTPPRGYHWVKAGGHYMLVSDHNNRV 111
+ GD +P +R Y++ W+ L P G HW GG Y+L+SD + ++
Sbjct 50 KPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKI 100
>P64534 Nickel/cobalt homeostasis protein RcnB [Escherichia coli
(strain K12)]
Length=112
Score = 46.6 bits (109), Expect = 2e-11
Identities = 17/51 (33%), Positives = 28/51 (55%), Gaps = 0/51 (0%)
Query 61 RKGDRLPPEFRHHRYHVDNWRAHRLHTPPRGYHWVKAGGHYMLVSDHNNRV 111
+ GD +P +R Y++ W+ L P G HW GG Y+L+SD + ++
Sbjct 50 KPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKI 100
>O14647 Chromodomain-helicase-DNA-binding protein 2 [Homo sapiens]
Length=1828
Score = 33.5 bits (75), Expect = 3e-06
Identities = 25/94 (27%), Positives = 31/94 (33%), Gaps = 20/94 (21%)
Query 28 WEREHHPRPAPHA-APSKWSHDHRSYKRDRPVDIRKGDR-------------------LP 67
W ++HH H A S+ + R RP D DR
Sbjct 1669 WYKDHHYGDRRHMDAHRSGSYRPNNMSRKRPYDQYSSDRDHRGHRDYYDRHHHDSKRRRS 1728
Query 68 PEFRHHRYHVDNWRAHRLHTPPRGYHWVKAGGHY 101
EFR YH ++R H P GYH HY
Sbjct 1729 DEFRPQNYHQQDFRRMSDHRPAMGYHGQGPSDHY 1762
Score = 18.1 bits (35), Expect = 0.55
Identities = 15/66 (23%), Positives = 23/66 (35%), Gaps = 6/66 (9%)
Query 28 WEREHHP---RPAPHAAPSKW-SHDHRSYKRDRPVDIRKGDRLPPEFRHHRYHVDNWRAH 83
++R HH R + P + D R RP G P + +H D +
Sbjct 1716 YDRHHHDSKRRRSDEFRPQNYHQQDFRRMSDHRPAMGYHGQG--PSDHYRSFHTDKLGEY 1773
Query 84 RLHTPP 89
+ PP
Sbjct 1774 KQPLPP 1779
Score = 16.9 bits (32), Expect = 1.3
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 48 DHRSYKRDRPVDIRK 62
D + +R RP +RK
Sbjct 1111 DKKPKRRGRPRSVRK 1125
Score = 16.5 bits (31), Expect = 1.8
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 69 EFRHHRYHVDNWRAH 83
E R ++ NW AH
Sbjct 483 ELRDYQLEGLNWLAH 497
Score = 15.4 bits (28), Expect = 4.2
Identities = 9/42 (21%), Positives = 18/42 (43%), Gaps = 2/42 (5%)
Query 42 PSKWSHDHRSYKRDRPVDIRKGDRLPPEFRHH--RYHVDNWR 81
P K + + R ++ GDR+ + + + H+ WR
Sbjct 1489 PDKGLNVQEQLEHTRNCLLKIGDRIAECLKAYSDQEHIKLWR 1530
Score = 15.0 bits (27), Expect = 5.6
Identities = 7/34 (21%), Positives = 13/34 (38%), Gaps = 0/34 (0%)
Query 28 WEREHHPRPAPHAAPSKWSHDHRSYKRDRPVDIR 61
W++E ++ + + K RPV R
Sbjct 151 WKQEPSEDEQEQGTSAESEPEQKKVKARRPVPRR 184
Lambda K H a alpha
0.326 0.139 0.485 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 164304
Database: fd3454e1177083ce40b3152e0c754155.SwissProt.fasta
Posted date: May 30, 2024 5:21 PM
Number of letters in database: 2,052
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
