BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 301a50dcd45dedfb5670ba1e56151c7f.SwissProt.fasta
           5 sequences; 598 total letters



Query= ACIAD0628

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AAT3 Uncharacterized protein YbdF [Escherichia coli O157:H7]        104     4e-34
P0AAT2 Uncharacterized protein YbdF [Escherichia coli (strain K12)]   104     4e-34
P0AF50 Uncharacterized protein YjbR [Escherichia coli (strain K12)]   54.7    1e-14
P0AF51 Uncharacterized protein YjbR [Escherichia coli O157:H7]        54.7    1e-14
P37507 Uncharacterized protein YyaQ [Bacillus subtilis (strain 168)]  39.7    4e-09


>P0AAT3 Uncharacterized protein YbdF [Escherichia coli O157:H7]
Length=122

 Score = 104 bits (260),  Expect = 4e-34
 Identities = 50/119 (42%), Positives = 77/119 (65%), Gaps = 0/119 (0%)

Query  20   MNAEQIQKLAIQTALKLPETTITQPFGPQCHVLKVFDKIFMLTSETQSQKFMNVKVDPHY  79
            M+ + + + A + AL+LP   +  PFGP+  V K+  KIFML+SE +   F+N+K DP  
Sbjct  1    MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK  60

Query  80   SDELKELYPSIKAGYHMNKKHWVSIFEDSKIDAELIESLVKSSYQLVVNRLSKVQKMRL  138
            S   +++YPSIK GYHMNKKHW+S++   +I   L+  L+  S+ LVV+ L+K  + R+
Sbjct  61   SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRV  119


>P0AAT2 Uncharacterized protein YbdF [Escherichia coli (strain 
K12)]
Length=122

 Score = 104 bits (260),  Expect = 4e-34
 Identities = 50/119 (42%), Positives = 77/119 (65%), Gaps = 0/119 (0%)

Query  20   MNAEQIQKLAIQTALKLPETTITQPFGPQCHVLKVFDKIFMLTSETQSQKFMNVKVDPHY  79
            M+ + + + A + AL+LP   +  PFGP+  V K+  KIFML+SE +   F+N+K DP  
Sbjct  1    MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQK  60

Query  80   SDELKELYPSIKAGYHMNKKHWVSIFEDSKIDAELIESLVKSSYQLVVNRLSKVQKMRL  138
            S   +++YPSIK GYHMNKKHW+S++   +I   L+  L+  S+ LVV+ L+K  + R+
Sbjct  61   SLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRV  119


>P0AF50 Uncharacterized protein YjbR [Escherichia coli (strain 
K12)]
Length=118

 Score = 54.7 bits (130),  Expect = 1e-14
 Identities = 24/87 (28%), Positives = 49/87 (56%), Gaps = 0/87 (0%)

Query  52   LKVFDKIFMLTSETQSQKFMNVKVDPHYSDELKELYPSIKAGYHMNKKHWVSIFEDSKID  111
            +KV D +F +  E +++  +++K  P  ++ L++ +  ++   H+NK HW +++ D  + 
Sbjct  29   IKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLP  88

Query  112  AELIESLVKSSYQLVVNRLSKVQKMRL  138
               I  LV +SYQ  VN L + ++  L
Sbjct  89   DSQIYYLVDASYQQAVNLLPEEKRKLL  115


>P0AF51 Uncharacterized protein YjbR [Escherichia coli O157:H7]
Length=118

 Score = 54.7 bits (130),  Expect = 1e-14
 Identities = 24/87 (28%), Positives = 49/87 (56%), Gaps = 0/87 (0%)

Query  52   LKVFDKIFMLTSETQSQKFMNVKVDPHYSDELKELYPSIKAGYHMNKKHWVSIFEDSKID  111
            +KV D +F +  E +++  +++K  P  ++ L++ +  ++   H+NK HW +++ D  + 
Sbjct  29   IKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLP  88

Query  112  AELIESLVKSSYQLVVNRLSKVQKMRL  138
               I  LV +SYQ  VN L + ++  L
Sbjct  89   DSQIYYLVDASYQQAVNLLPEEKRKLL  115


>P37507 Uncharacterized protein YyaQ [Bacillus subtilis (strain 
168)]
Length=118

 Score = 39.7 bits (91),  Expect = 4e-09
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (2%)

Query  71   MNVKVDPHYSDELKELYPSIKAGYHMNKKHWVSIFEDSKIDAELIESLVKSSYQL  125
            +N+K  P  SD L+    +I  GYHM+K+HW+SI  +       I +L++ S+ L
Sbjct  63   LNLKCPPEISDRLRN-GENILPGYHMDKEHWISIVLERTDPEGEIYNLIEQSFHL  116


 Score = 18.1 bits (35),  Expect = 0.17
 Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 0/20 (0%)

Query  85   ELYPSIKAGYHMNKKHWVSI  104
            E YP+  +  H + K W  +
Sbjct  24   EKYPNYASLRHTSNKKWYGL  43


 Score = 17.3 bits (33),  Expect = 0.30
 Identities = 6/19 (32%), Positives = 11/19 (58%), Gaps = 0/19 (0%)

Query  80   SDELKELYPSIKAGYHMNK  98
            +D   E+Y  I+  +H+ K
Sbjct  100  TDPEGEIYNLIEQSFHLTK  118



Lambda      K        H        a         alpha
   0.323    0.135    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 58652


  Database: 301a50dcd45dedfb5670ba1e56151c7f.SwissProt.fasta
    Posted date:  May 30, 2024  2:03 AM
  Number of letters in database: 598
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40