BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0e0699312e58b58fbd94c109ff1434c5.SwissProt.fasta
12 sequences; 5,856 total letters
Query= ACIAD0657
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
P33983 RNA polymerase sigma-54 factor [Acinetobacter guillouiae] 730 0.0
P49988 RNA polymerase sigma-54 factor [Pseudomonas aeruginosa (st... 454 3e-160
A0A0H2ZGR9 RNA polymerase sigma-54 factor [Pseudomonas aeruginosa... 454 3e-160
P0A172 RNA polymerase sigma-54 factor [Pseudomonas putida] 441 8e-155
P0A171 RNA polymerase sigma-54 factor [Pseudomonas putida (strain... 441 8e-155
P08623 RNA polymerase sigma-54 factor [Azotobacter vinelandii] 438 1e-153
Q9S0L2 RNA polymerase sigma-54 factor [Shewanella violacea (strai... 431 3e-151
P24255 RNA polymerase sigma-54 factor [Escherichia coli (strain K... 429 1e-150
O08429 RNA polymerase sigma-54 factor [Vibrio anguillarum] 422 7e-148
P06223 RNA polymerase sigma-54 factor [Klebsiella oxytoca] 421 3e-147
P26979 RNA polymerase sigma-54 factor [Salmonella typhimurium (st... 416 3e-145
P24695 RNA polymerase sigma-54 factor [Acidithiobacillus ferridur... 365 1e-125
>P33983 RNA polymerase sigma-54 factor [Acinetobacter guillouiae]
Length=482
Score = 730 bits (1885), Expect = 0.0
Identities = 366/483 (76%), Positives = 427/483 (88%), Gaps = 2/483 (0%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAESLT 60
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEK+E+E T ES
Sbjct 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEEE-THESPE 59
Query 61 HLENKESR-DLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEEREDNRQAEHTLK 119
+++ ++ +L+ LNA+HLP++LPVDTDWDDVYTHQSTA+ PE+E+REDNR +E +LK
Sbjct 60 NVKQEQQEYELSDSLNANHLPDELPVDTDWDDVYTHQSTAMERPEFEDREDNRHSEASLK 119
Query 120 EHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEAAQYLLSEAGLEEEIEAD 179
EH+L QVNLLHFS VD+LIAYC+VD LDEKGFL A+IEEI+ + Q+LL + + E+E D
Sbjct 120 EHMLGQVNLLHFSPVDKLIAYCIVDALDEKGFLAADIEEIVSSVQHLLQQMDYDIEVEED 179
Query 180 EVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEALSLLKYYELLVSNDLNK 239
EV+VVLKHIQRL+P+G+G+++LAECL VQ++ L T R EAL LLK+YELLVSNDLNK
Sbjct 180 EVLVVLKHIQRLEPIGIGARSLAECLFVQIEALATTTLFRKEALMLLKHYELLVSNDLNK 239
Query 240 LLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNPDIM 299
L+K T L +K AI+LLKTLKPYPG +FE ++SDYQ+PDV+V+KK+ W VQLNPDI+
Sbjct 240 LIKQTGLNAELLKSAIDLLKTLKPYPGAEFEQKESDYQIPDVMVSKKNDHWYVQLNPDIL 299
Query 300 PKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQRNF 359
PKLRINSFYS MI+RADQSD N YLRNQMLEAKNFIKS+DERHKTLLKVA+CIV+HQR F
Sbjct 300 PKLRINSFYSGMIKRADQSDDNQYLRNQMLEAKNFIKSVDERHKTLLKVASCIVQHQREF 359
Query 360 FEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTSGGE 419
EIG EGMKPLVLRDVAEEVELHESTVSRVTTNK++LTPRGLFELKYFFSSHVGTTSGGE
Sbjct 360 LEIGAEGMKPLVLRDVAEEVELHESTVSRVTTNKFLLTPRGLFELKYFFSSHVGTTSGGE 419
Query 420 CSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSSERK 479
SSTAIRA+IKK+++ ENPRKPLSDN IAN+LK+EGIDVARRTVAKYRESLHIPSSS+RK
Sbjct 420 ASSTAIRAKIKKLVADENPRKPLSDNTIANLLKEEGIDVARRTVAKYRESLHIPSSSDRK 479
Query 480 VLI 482
VLI
Sbjct 480 VLI 482
>P49988 RNA polymerase sigma-54 factor [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=497
Score = 454 bits (1169), Expect = 3e-160
Identities = 248/504 (49%), Positives = 342/504 (68%), Gaps = 29/504 (6%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIED-------- 52
MK S+ LK+ L++TPQLQQAIRLLQLS+L+L+QEIQ L+SNP+LE+ ED
Sbjct 1 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD 60
Query 53 ------EGTAESLTHLENKES-----RDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALA 101
E A + +ES L D ++ +P++LPVDT W+D+Y +++L
Sbjct 61 PLADGAEQAASAPQESPLQESATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLP 120
Query 102 SPEYEEREDNRQAE--HTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEI 159
S + +E + + +L H+L QVNL S DR+IA ++D ++ G+L+ +EEI
Sbjct 121 SNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIAVTIIDSINNDGYLEESLEEI 180
Query 160 IEAAQYLLSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLR 219
+ A E ++E DEV VVL+ IQ+L+P G+G++NL ECL +QL L TP
Sbjct 181 LAAIDP-------ELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWL 233
Query 220 NEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQV 278
NEAL L+ Y +LL D ++L++ L ++++ IEL++ L P PG E+ +++Y V
Sbjct 234 NEALRLVSDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIV 293
Query 279 PDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSI 338
PDV+V K ++ W V+LN + MP+LR+N+ Y+ M+RRAD S N ++RNQ+ EA+ FIKS+
Sbjct 294 PDVIVRKDNERWLVELNQEAMPRLRVNATYAGMVRRADSSADNTFMRNQLQEARWFIKSL 353
Query 339 DERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTP 398
R++TL+KVAT IVEHQR F + G E MKPLVL D+AE V +HEST+SRVTT KYM TP
Sbjct 354 QSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTP 413
Query 399 RGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDV 458
RG+FELKYFFSSHV T GGECSSTAIRA IKK+++AEN +KPLSD+ IA +L+ +GI V
Sbjct 414 RGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQV 473
Query 459 ARRTVAKYRESLHIPSSSERKVLI 482
ARRTVAKYRESL I SSERK L+
Sbjct 474 ARRTVAKYRESLGIAPSSERKRLV 497
>A0A0H2ZGR9 RNA polymerase sigma-54 factor [Pseudomonas aeruginosa
(strain UCBPP-PA14)]
Length=497
Score = 454 bits (1169), Expect = 3e-160
Identities = 248/504 (49%), Positives = 342/504 (68%), Gaps = 29/504 (6%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIED-------- 52
MK S+ LK+ L++TPQLQQAIRLLQLS+L+L+QEIQ L+SNP+LE+ ED
Sbjct 1 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD 60
Query 53 ------EGTAESLTHLENKES-----RDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALA 101
E A + +ES L D ++ +P++LPVDT W+D+Y +++L
Sbjct 61 PLADGAEQAASAPQESPLQESATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLP 120
Query 102 SPEYEEREDNRQAE--HTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEI 159
S + +E + + +L H+L QVNL S DR+IA ++D ++ G+L+ +EEI
Sbjct 121 SNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIAVTIIDSINNDGYLEESLEEI 180
Query 160 IEAAQYLLSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLR 219
+ A E ++E DEV VVL+ IQ+L+P G+G++NL ECL +QL L TP
Sbjct 181 LAAIDP-------ELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWL 233
Query 220 NEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQV 278
NEAL L+ Y +LL D ++L++ L ++++ IEL++ L P PG E+ +++Y V
Sbjct 234 NEALRLVSDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIV 293
Query 279 PDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSI 338
PDV+V K ++ W V+LN + MP+LR+N+ Y+ M+RRAD S N ++RNQ+ EA+ FIKS+
Sbjct 294 PDVIVRKDNERWLVELNQEAMPRLRVNATYAGMVRRADSSADNTFMRNQLQEARWFIKSL 353
Query 339 DERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTP 398
R++TL+KVAT IVEHQR F + G E MKPLVL D+AE V +HEST+SRVTT KYM TP
Sbjct 354 QSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTP 413
Query 399 RGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDV 458
RG+FELKYFFSSHV T GGECSSTAIRA IKK+++AEN +KPLSD+ IA +L+ +GI V
Sbjct 414 RGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQV 473
Query 459 ARRTVAKYRESLHIPSSSERKVLI 482
ARRTVAKYRESL I SSERK L+
Sbjct 474 ARRTVAKYRESLGIAPSSERKRLV 497
>P0A172 RNA polymerase sigma-54 factor [Pseudomonas putida]
Length=497
Score = 441 bits (1133), Expect = 8e-155
Identities = 245/506 (48%), Positives = 342/506 (68%), Gaps = 33/506 (7%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIED----EGTA 56
MK S+ LK+ L++TPQLQQAIRLLQLS+L+L+QEIQ L+SNP+LE+ ED + +
Sbjct 1 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60
Query 57 ESLTHLENKESRDLTQD------LNADHL---------PNDLPVDTDWDDVYTHQSTALA 101
+ ENK + ++ + ++AD+L PN+LPVDT W+D+Y +++L
Sbjct 61 PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120
Query 102 SPEYEERE--DNRQAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEI 159
S + +E + A +L+ H+L Q+NL S DRLIA ++D ++ +G+L+ +EEI
Sbjct 121 SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEI 180
Query 160 IEAAQYLLSEAGLEEE--IEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTP 217
AG + E IE DEV VL IQ+ +P GVG++NL ECL +QL L TP
Sbjct 181 C---------AGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTP 231
Query 218 LRNEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDY 276
EA L+ + +LL S D ++L++ + ++++ IEL+++L P PG E+ + +Y
Sbjct 232 WMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEY 291
Query 277 QVPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIK 336
VPDV+V K W V+LN + +P+LR+N Y+ +RRAD S N ++RNQ+ EA+ FIK
Sbjct 292 VVPDVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIK 351
Query 337 SIDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYML 396
S+ R++TL+KVAT IVEHQR F + G E MKPLVL D+AE V +HEST+SRVTT KYM
Sbjct 352 SLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMH 411
Query 397 TPRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGI 456
TPRG++ELKYFFSSHV T+ GGECSSTAIRA IKK+++AEN +KPLSD+ IA +L+ +GI
Sbjct 412 TPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGI 471
Query 457 DVARRTVAKYRESLHIPSSSERKVLI 482
VARRTVAKYRESL I SSERK L+
Sbjct 472 QVARRTVAKYRESLGIAPSSERKRLM 497
>P0A171 RNA polymerase sigma-54 factor [Pseudomonas putida (strain
ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=497
Score = 441 bits (1133), Expect = 8e-155
Identities = 245/506 (48%), Positives = 342/506 (68%), Gaps = 33/506 (7%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIED----EGTA 56
MK S+ LK+ L++TPQLQQAIRLLQLS+L+L+QEIQ L+SNP+LE+ ED + +
Sbjct 1 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60
Query 57 ESLTHLENKESRDLTQD------LNADHL---------PNDLPVDTDWDDVYTHQSTALA 101
+ ENK + ++ + ++AD+L PN+LPVDT W+D+Y +++L
Sbjct 61 PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120
Query 102 SPEYEERE--DNRQAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEI 159
S + +E + A +L+ H+L Q+NL S DRLIA ++D ++ +G+L+ +EEI
Sbjct 121 SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEI 180
Query 160 IEAAQYLLSEAGLEEE--IEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTP 217
AG + E IE DEV VL IQ+ +P GVG++NL ECL +QL L TP
Sbjct 181 C---------AGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTP 231
Query 218 LRNEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDY 276
EA L+ + +LL S D ++L++ + ++++ IEL+++L P PG E+ + +Y
Sbjct 232 WMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEY 291
Query 277 QVPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIK 336
VPDV+V K W V+LN + +P+LR+N Y+ +RRAD S N ++RNQ+ EA+ FIK
Sbjct 292 VVPDVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIK 351
Query 337 SIDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYML 396
S+ R++TL+KVAT IVEHQR F + G E MKPLVL D+AE V +HEST+SRVTT KYM
Sbjct 352 SLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMH 411
Query 397 TPRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGI 456
TPRG++ELKYFFSSHV T+ GGECSSTAIRA IKK+++AEN +KPLSD+ IA +L+ +GI
Sbjct 412 TPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGI 471
Query 457 DVARRTVAKYRESLHIPSSSERKVLI 482
VARRTVAKYRESL I SSERK L+
Sbjct 472 QVARRTVAKYRESLGIAPSSERKRLM 497
>P08623 RNA polymerase sigma-54 factor [Azotobacter vinelandii]
Length=502
Score = 438 bits (1126), Expect = 1e-153
Identities = 245/511 (48%), Positives = 340/511 (67%), Gaps = 38/511 (7%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIED-------- 52
MK S+ LK+ L++TPQLQQAIRLLQLS+L+L+QEIQ LDSNP+LE+ ED
Sbjct 1 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLERQEDAEDYDSPD 60
Query 53 ----EGTAESL-----THLENKESRDLTQDLNA-------DHLPNDLPVDTDWDDVYTHQ 96
G +L ++ E ES ++D + +P++LPVDT W+D+Y
Sbjct 61 MLGEHGDQSTLDTTPGSYQEGYESGAASEDGGTLEEGDWHERIPSELPVDTAWEDIYQTS 120
Query 97 STALASPEYEEREDNRQAE--HTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDA 154
++ L S + +E + + +L+ H+L Q+NL S DRLIA ++D ++ G+L+A
Sbjct 121 ASNLPSTDEDEWDFTTRTSTGESLQSHLLWQLNLTPMSDTDRLIAVTLIDSINSDGYLEA 180
Query 155 EIEEIIEAAQYLLSEAGLEEE--IEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVL 212
+EEI+ A L+ E +E DEV +VL+ IQ+ +P G+ +++L+E L +QL L
Sbjct 181 ALEEIL---------ASLDPELGVELDEVEMVLRRIQQFEPAGIAARDLSESLLLQLRQL 231
Query 213 DVFTPLRNEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEA 271
TP EA L K Y +LL + D +L++ L +++ IEL+++L P PG E+
Sbjct 232 PPDTPWLEEAKRLAKDYLDLLGNRDFTQLMRRMKLKEEELRPVIELIQSLNPRPGAQIES 291
Query 272 QDSDYQVPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEA 331
+ +Y VPDV+V K + W V+LN + +P+LRIN Y+ IRRAD S N ++RNQ+ EA
Sbjct 292 SEPEYVVPDVIVRKHNDRWLVELNQEAVPRLRINPHYAGFIRRADASADNTFMRNQLQEA 351
Query 332 KNFIKSIDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTT 391
+ FIKS+ R++TL+KV+T IVEHQR F + G E MKPLVL D+AE V +HEST+SRVTT
Sbjct 352 RWFIKSLQSRNETLMKVSTQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTT 411
Query 392 NKYMLTPRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANML 451
KYM TPRG++ELKYFFSSHV T GGECSSTAIRA IKK+I+AENP+KPLSD+ IA +L
Sbjct 412 QKYMHTPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLIAAENPKKPLSDSKIAGLL 471
Query 452 KDEGIDVARRTVAKYRESLHIPSSSERKVLI 482
+++GI VARRTVAKYRESL I SSERK L+
Sbjct 472 EEQGIQVARRTVAKYRESLSIAPSSERKRLM 502
>Q9S0L2 RNA polymerase sigma-54 factor [Shewanella violacea (strain
JCM 10179 / CIP 106290 / LMG 19151 / DSS12)]
Length=492
Score = 431 bits (1109), Expect = 3e-151
Identities = 237/504 (47%), Positives = 328/504 (65%), Gaps = 35/504 (7%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDE------- 53
MK S+ LK+ L++TPQLQQAIRLLQLSSLEL+QEIQ LDSNPLLE E++
Sbjct 1 MKASLQLKMGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELDEEQVDPPVNG 60
Query 54 -----------GTAESLTHLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALAS 102
TAES ++N + + ++ + D +P +LP+DT WD+VYT + +
Sbjct 61 EDKTVDTEDFSATAESDGPIDNS-AVETSEAITRDSMPEELPMDTTWDEVYTASPNSTSG 119
Query 103 PEYEEREDNR----QAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEE 158
R+D+ + L EH+ Q NL FS D IA +++ +DE+G+L IE+
Sbjct 120 AM---RDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIEAIDERGYLTQSIED 176
Query 159 IIEAAQYLLSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPL 218
I+EA + EIE DE+ VLK IQ DP+G+ +++L+ECL +QL TP
Sbjct 177 ILEAMG--------DPEIEQDEIEAVLKRIQHFDPIGIAARDLSECLLIQLAQYADTTPH 228
Query 219 RNEALSLLK-YYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQ 277
+ A L++ + +L+ D L++ T L +++AIEL++TL P PGL +Y
Sbjct 229 IDNARILIRDHLDLIAGRDFRLLMRKTKLKEDALRDAIELIQTLNPRPGLAVTPGKDEYV 288
Query 278 VPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKS 337
+PDV VTKK W V+LNPD MPK+ +N Y++M + + ++R + EAK FIKS
Sbjct 289 IPDVTVTKKKGRWMVELNPDNMPKISVNQHYASMAKSTKSQADSQFIRGHLQEAKWFIKS 348
Query 338 IDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLT 397
++ R++TLLKV+ CIV+ Q+ FFE G E MKP+VL D+AE VE+HEST+SRVTT KYM T
Sbjct 349 LESRNETLLKVSKCIVKFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHT 408
Query 398 PRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGID 457
PRG+FELKYFFSSHV T GGECSSTAIRA IKK+++AEN +KPLSD+ +A +L D+GI
Sbjct 409 PRGIFELKYFFSSHVATDDGGECSSTAIRAFIKKLVAAENQQKPLSDSKMALLLADQGIK 468
Query 458 VARRTVAKYRESLHIPSSSERKVL 481
VARRT+AKYRE++ IP S++RK L
Sbjct 469 VARRTIAKYREAMLIPPSNQRKSL 492
>P24255 RNA polymerase sigma-54 factor [Escherichia coli (strain
K12)]
Length=477
Score = 429 bits (1103), Expect = 1e-150
Identities = 227/486 (47%), Positives = 327/486 (67%), Gaps = 13/486 (3%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAESLT 60
MK + L+++ L++TPQLQQAIRLLQLS+LEL+QE+Q L+SNPLLE+I+ ++
Sbjct 1 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDT-R 59
Query 61 HLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEERE---DNRQAEHT 117
++ E+ D L +P +LP+D WD +YT + + S +Y + E + T
Sbjct 60 ETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQT 119
Query 118 LKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEAAQYLLSEAGLEEEIE 177
L+++++ QV L FS DR IA +VD +DE G+L +E+I+E+ +EEI+
Sbjct 120 LQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIG--------DEEID 171
Query 178 ADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEA-LSLLKYYELLVSND 236
DEV VLK IQR DPVGV +K+L +CL +QL D TP EA L + + +LL ++D
Sbjct 172 IDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHD 231
Query 237 LNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNP 296
L++ T L +KEA+ L+++L P PG + + +Y +PDV+V K + W V+LN
Sbjct 232 FRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNS 291
Query 297 DIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQ 356
D +P+L+IN Y++M A + ++R+ + +AK IKS++ R+ TLL+V+ CIVE Q
Sbjct 292 DSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQ 351
Query 357 RNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTS 416
+ FFE G E MKP+VL D+A+ VE+HEST+SRVTT KY+ +PRG+FELKYFFSSHV T
Sbjct 352 QAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEG 411
Query 417 GGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSS 476
GGE SSTAIRA +KK+I+AENP KPLSD+ + ++L ++GI VARRTVAKYRESL IP S+
Sbjct 412 GGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSN 471
Query 477 ERKVLI 482
+RK L+
Sbjct 472 QRKQLV 477
>O08429 RNA polymerase sigma-54 factor [Vibrio anguillarum]
Length=486
Score = 422 bits (1086), Expect = 7e-148
Identities = 240/501 (48%), Positives = 331/501 (66%), Gaps = 34/501 (7%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLL---EKIEDEGTAE 57
MK S+ LK+ L++TPQLQQAIRLLQLS+LEL+QEIQ L+SNPLL E E+ TA+
Sbjct 1 MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLELQQEIQEALESNPLLDVEEAYEENATAD 60
Query 58 SLTHLENKES---------RDLTQDLNADHLPNDLPVDTDWDDVYTHQ--STALA----S 102
+ E KE+ +D + + + ++L +DT WDDVY+ ST +A
Sbjct 61 VHSINEEKEASAEVLDIEPQDSSDLIEKSEISSELEIDTTWDDVYSANTGSTGIALDDDM 120
Query 103 PEYEEREDNRQAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEA 162
P Y+ + TL++++L Q++L FS DR IA ++D +D+ G+L +++I+E+
Sbjct 121 PVYQG-----ETTQTLQDYLLWQLDLTPFSDTDRSIALALIDAIDDYGYLTVSLDDILES 175
Query 163 AQYLLSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEA 222
+E IE DE+ V K +Q+ DP+GV S NL +CL +QL TP EA
Sbjct 176 FA--------DENIELDEIEAVRKRVQQFDPLGVASVNLQDCLLLQLATYPASTPWLEEA 227
Query 223 LSLL-KYYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDV 281
LL ++ +LL + D ++K T L ++E ++L++ L P PG + + ++Y VPDV
Sbjct 228 KQLLIQHIDLLGNRDYKLIIKETKLKEEDLREVLQLIQQLDPRPGNNISTEHAEYVVPDV 287
Query 282 VVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDER 341
V K W V +NPD +PKL+IN Y+ + + + +D N Y+R+ + EAK IKS++ R
Sbjct 288 SVYKDHGKWVVTINPDSVPKLKINQQYA-ALGKGNSADSN-YIRSNLQEAKWLIKSLESR 345
Query 342 HKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGL 401
++TLLKVA CIVEHQR+FFE G E MKP+VL DVA VE+HEST+SRVTT KYM TPRG+
Sbjct 346 NETLLKVAKCIVEHQRDFFEYGEEAMKPMVLNDVALAVEMHESTISRVTTQKYMHTPRGI 405
Query 402 FELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARR 461
FELKYFFSSHV T SGGECSSTAIRA IKK+++AEN KPLSD+ IA++L D+GI VARR
Sbjct 406 FELKYFFSSHVSTDSGGECSSTAIRALIKKLVAAENTAKPLSDSKIADLLADQGIQVARR 465
Query 462 TVAKYRESLHIPSSSERKVLI 482
T+AKYRESL I SS+RK L+
Sbjct 466 TIAKYRESLGIAPSSQRKRLL 486
>P06223 RNA polymerase sigma-54 factor [Klebsiella oxytoca]
Length=477
Score = 421 bits (1081), Expect = 3e-147
Identities = 225/486 (46%), Positives = 322/486 (66%), Gaps = 13/486 (3%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAESLT 60
MK + L+++ L++TPQLQQAIRLLQLS+LEL+QE+Q LDSNPLLE+ + E+
Sbjct 1 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVET-K 59
Query 61 HLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEERE---DNRQAEHT 117
E++ES D L +P +LP+D WD++YT + + +Y++ E + +
Sbjct 60 EAEDRESLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQS 119
Query 118 LKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEAAQYLLSEAGLEEEIE 177
L+++++ QV L F+ DR IA +VD +D+ G+L +E+I+E+ ++EI
Sbjct 120 LQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISVEDIVESIG--------DDEIG 171
Query 178 ADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEA-LSLLKYYELLVSND 236
+EV VLK IQR DPVGV +K+L +CL VQL TP EA L + + +LL ++D
Sbjct 172 LEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWIEEARLIISDHLDLLANHD 231
Query 237 LNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNP 296
L++ T L +KEA+ L+++L P PG + + +Y +PDV+V K + W V+LN
Sbjct 232 FRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVNDRWVVELNS 291
Query 297 DIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQ 356
D +P+L+IN Y+ M ++R+ + EA+ IKS++ R+ TLL+V+ CIVE Q
Sbjct 292 DSLPRLKINQQYAAMGNSTRNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQ 351
Query 357 RNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTS 416
+ FFE G E MKP+VL D+A+ VE+HEST+SRVTT KY+ +PRG+FELKYFFSSHV T
Sbjct 352 QAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEG 411
Query 417 GGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSS 476
GGE SSTAIRA +KK+I+AENP KPLSD+ + ML D+GI VARRTVAKYRESL IP S+
Sbjct 412 GGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSN 471
Query 477 ERKVLI 482
+RK L+
Sbjct 472 QRKQLV 477
>P26979 RNA polymerase sigma-54 factor [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=477
Score = 416 bits (1068), Expect = 3e-145
Identities = 221/486 (45%), Positives = 323/486 (66%), Gaps = 13/486 (3%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAESLT 60
MK + L+++ L++TPQLQQAIRLLQLS+LEL+QE+Q L++NPLLE+ + ++
Sbjct 1 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQ 60
Query 61 HLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEERE---DNRQAEHT 117
+N + D L +P +LP+D WD++YT + + S +Y + E + +
Sbjct 61 PQDN-DPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQS 119
Query 118 LKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEAAQYLLSEAGLEEEIE 177
L+++++ QV L FS DR IA +VD +D+ G+L ++EI E+ + E++
Sbjct 120 LQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMG--------DVEVD 171
Query 178 ADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEA-LSLLKYYELLVSND 236
DEV VLK IQR DPVGV +K+L +CL +QL D TP EA L + + +LL ++D
Sbjct 172 LDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHD 231
Query 237 LNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNP 296
L++ T L +KEA+ L+++L P PG + + +Y +PDV+V K + W V+LN
Sbjct 232 FRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNS 291
Query 297 DIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQ 356
D +P+L+IN Y+ M A + ++R+ + +AK IKS++ R+ TLL+V+ CIVE Q
Sbjct 292 DSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQ 351
Query 357 RNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTS 416
+ FFE G E MKP+VL D+A+ VE+HEST+SRVTT KY+ +PRG+FELKYFFSSHV T
Sbjct 352 QAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEG 411
Query 417 GGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSS 476
GGE SSTAIRA +KK+I+AENP KPLSD+ + ++L ++GI VARRTVAKYRESL IP S+
Sbjct 412 GGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSN 471
Query 477 ERKVLI 482
+RK L+
Sbjct 472 QRKQLV 477
>P24695 RNA polymerase sigma-54 factor [Acidithiobacillus ferridurans]
Length=475
Score = 365 bits (937), Expect = 1e-125
Identities = 204/493 (41%), Positives = 307/493 (62%), Gaps = 30/493 (6%)
Query 1 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLL-EKIEDEGTAESL 59
MK + LK+ L++TPQLQQAIRLLQLS+++L+QE+Q L+SNPLL E+ DEG +
Sbjct 1 MKQGLELKLGQHLAMTPQLQQAIRLLQLSTVDLQQEVQGMLESNPLLDEETGDEGGGGPI 60
Query 60 THLENKESRDLTQDLNADH-LPNDLPVDTDWDDVYTHQSTALAS------PEYEEREDNR 112
S + DL A++ LP++LPVD+ WDD++ ++ + P++E R
Sbjct 61 PETVELPSEERQLDLAAENILPDELPVDSQWDDIFDMGTSGSGNGSDEDLPDFESRNSRT 120
Query 113 QAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEEIIEAAQYLLSEAGL 172
Q+ L++++ Q ++ HF+ +R +A ++D +DE+G+L +E++
Sbjct 121 QS---LQDYLRWQADMTHFTADERNMAELIIDAIDERGYLADSLEDLAATMN-------- 169
Query 173 EEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVL----DVFTPLRNEALSLLKY 228
++ D ++ VL +Q DP GVG++NL+ECL +QL + D L + +
Sbjct 170 ---VQEDALLAVLLRVQDFDPPGVGARNLSECLLLQLKQMVEKDDAHVLLAQRIVK--DH 224
Query 229 YELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQ 288
+ L +D +L + ++ A+ L+ L P PG D + ++Y +PDV+V
Sbjct 225 LQALGRHDYPRLCTVLGVDEAALRAAMALISALNPKPGEDVGTESTEYVIPDVIVRWAGS 284
Query 289 SWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKV 348
+ LNP+ MPKLRIN Y++M D + + Y+++Q+ EA+ FIKS+ R T+LKV
Sbjct 285 RLRTDLNPEAMPKLRINRHYADMAGGKDAA--HKYIQDQLNEARWFIKSLQSRQDTILKV 342
Query 349 ATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFF 408
A IVE Q++FF GPE M+P+VLR +A+ VE+HESTVSRVT KYM+TPRGL+E KYFF
Sbjct 343 ARAIVERQKDFFANGPESMRPMVLRHIADAVEMHESTVSRVTNQKYMITPRGLYEFKYFF 402
Query 409 SSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRE 468
SSHVGT SGG S+TAIRA + KM AE+ + PLSD IA +L D+GI +ARRTVAKYRE
Sbjct 403 SSHVGTDSGGSASATAIRALLIKMTQAEDAQHPLSDAEIARVLADQGIQIARRTVAKYRE 462
Query 469 SLHIPSSSERKVL 481
+ ++P +S+R+ L
Sbjct 463 AANVPPASQRRRL 475
Lambda K H a alpha
0.316 0.133 0.368 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2265408
Database: 0e0699312e58b58fbd94c109ff1434c5.SwissProt.fasta
Posted date: May 19, 2024 7:25 PM
Number of letters in database: 5,856
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
