BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b446c5716b45e73ce6b8ecc08ca3cf4f.SwissProt.fasta
2 sequences; 912 total letters
Query= ACIAD0669
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Q9K1M2 Putative outer membrane protein NMB0088 [Neisseria meningi... 58.5 4e-13
Q8CVU7 Long-chain fatty acid transport protein [Escherichia coli ... 44.7 8e-09
>Q9K1M2 Putative outer membrane protein NMB0088 [Neisseria meningitidis
serogroup B (strain MC58)]
Length=466
Score = 58.5 bits (140), Expect = 4e-13
Identities = 102/480 (21%), Positives = 170/480 (35%), Gaps = 86/480 (18%)
Query 31 SVDVRSLALGNAVTADPPGISAIHFNPAALTKIEGLQTDVQGLIANFDIKREFSAPAGYN 90
SV+ +S A NA A+ S I +NPA LTK++ Q V I I E + +
Sbjct 33 SVNAQSTA--NAAAAEAADASTIFYNPAGLTKLDSSQISVNANIVLPSIHYEADSATDFT 90
Query 91 VFGYSDDPLVCNDGPEVASNLCTDYKGSVSGDVEYASIYVPILKKMVDLGEGVPLAAPTA 150
+GS SG + ++ AP
Sbjct 91 GL---------------------PVQGSKSGKITKTTV------------------APHI 111
Query 151 GIAYKPPGSKITYATAIYAPLVAGFGSENGNPGNYMGQQVALERVTYLSPSLAFKVTDEL 210
AYK +T +Y P + E + + ++ L + + P A+K+ D
Sbjct 112 YGAYKV-NDNLTVGLGVYVPFGSATEYEKDSVLRHNINKLGLTSIA-VEPVAAWKLNDRH 169
Query 211 SLGASIGMSYQAISIKTDLRFPNELIGVLRMVDEVVCAPFKDNNDVITDLLLLGICNAQE 270
S GA I + + ++ + G+ + + P K N G+ A +
Sbjct 170 SFGAGIIAQHTSAELRKYADW-----GIKSKAEILTAKPPKPN----------GVAEAAK 214
Query 271 GMNPFNRFGQLKVSVEQALSPSYNLGLLWEPNDDFSFGMVYQSASKMRLKGKYFVDNEKA 330
G V Y L +W+ ND G+ Y+S LKG D E A
Sbjct 215 ----IQADGHADVKGSD-WGFGYQLAWMWDINDRARVGVNYRSKVSHTLKG----DAEWA 265
Query 331 PRELIRGLNSSATGAVFARILGFPSSIPASESGLVSMDFEYPAHFQAGIKYKILPDLQVN 390
+ +A A+++ +L + A+E V + P YK+ +
Sbjct 266 A-------DGAAAKAMWSTMLA-ANGYTANEKARVKI--VTPESLSVHGMYKVSDKADLF 315
Query 391 FDVGWTDYSAWDKFRFEFDRQVAALKIAKLLSSDITDDSLALPLKFTSPWSWGIGFEYSA 450
DV WT +S +DK F+++ +K D + + + + G G Y
Sbjct 316 GDVTWTRHSRFDKAELVFEKEKTVVK--------GKSDRTTITPNWRNTYKVGFGGSYQI 367
Query 451 TDRLKLRAGYEPRTSAIPN-DKRNTLIPINNAQLFGLGIGYRFDTDTDIDLSVGFLRSRD 509
++ L+LRAG S + N D R +P N F G+ Y + +D + + D
Sbjct 368 SEPLQLRAGIAFDKSPVRNADYRMNSLPDGNRIWFSAGMKYHIGKNHVVDAAYTHIHIND 427
Score = 17.3 bits (33), Expect = 2.7
Identities = 6/14 (43%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 479 NNAQLFGLGIGYRF 492
N+A + GL Y+F
Sbjct 452 NHADIIGLQYTYKF 465
Score = 16.5 bits (31), Expect = 4.6
Identities = 4/8 (50%), Positives = 8/8 (100%), Gaps = 0/8 (0%)
Query 546 LGINYRTR 553
+G+NYR++
Sbjct 246 VGVNYRSK 253
>Q8CVU7 Long-chain fatty acid transport protein [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=446
Score = 44.7 bits (104), Expect = 8e-09
Identities = 42/217 (19%), Positives = 85/217 (39%), Gaps = 31/217 (14%)
Query 293 YNLGLLWEPNDDFSFGMVYQSASKMRLKGKYFVDNEKAPRELIRGLNSSATGAVFARILG 352
+N G+L+E + D +G+ Y+S K+ G Y + LN+ +G
Sbjct 228 WNAGILYELDKDNRWGLTYRSEVKIDFDGDY-------KSSINPNLNNILGN------MG 274
Query 353 FP-SSIPASESGLVSMDFEYPAHFQAGIKYKILPDLQVNFDVGWTDYSAWDKFRFEFDRQ 411
P ++ A+++G S+ P ++ ++ P +++ + +T +S + + + + D
Sbjct 275 LPYGTMGATQNG--SLTLNLPEMWEISGYNRVAPQWAIHYSMAYTSWSQFQELKAKGDSG 332
Query 412 VAALKIAKLLSSDITDDSLALPLKFTSPWSWGIGFEYSATDRLKLRAGYEPRTSAIPNDK 471
D+ F + +G Y R G S +P DK
Sbjct 333 QTLF---------YKDEG------FRDAYRIALGTTYYYDKNWTFRTGIAYDDSPVPADK 377
Query 472 RNTLIPINNAQLFGLGIGYRFDTDTDIDLSVGFLRSR 508
R+ IP + G+ Y F+ D ID+ ++ +
Sbjct 378 RSISIPDQDRLWLSAGLTYAFNEDASIDVGASYMHGQ 414
Score = 24.3 bits (51), Expect = 0.019
Identities = 22/78 (28%), Positives = 31/78 (40%), Gaps = 7/78 (9%)
Query 426 TDDSLALPLKFTSPWSWGIGFEYSATDRLKLRAGYEPRTSAIPNDKRN-----TLIPINN 480
T +LA+ + S +W GF+ + L Y AI +D N LI + +
Sbjct 8 TKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGE-GAIADDAGNVSRNPALITMFD 66
Query 481 AQLFGLGIGYRFDTDTDI 498
F G Y D D DI
Sbjct 67 RPTFSAGAVY-IDPDVDI 83
Score = 21.6 bits (44), Expect = 0.13
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query 73 LIANFDIKREFSAPAGYNVFGYSDDPLVCNDGPEVASNLCTDYKGSVSGDVEYASIYV-- 130
+ +N+ + EF+ ++G D N A L + + D YA +
Sbjct 124 ITSNYGLATEFTDNYAAGIYGGKTDLQTINLNLSGAYRLNNSWSFGLGFDAVYAKAKIER 183
Query 131 ------PILKKMVDLGEGVPLAAPTAGIAYKPPGSKITY 163
P+L + + + +GVP A+ T GI P S+I +
Sbjct 184 YAGSLGPLLSQQL-IAQGVP-ASLTNGI--NTPDSQIAH 218
Score = 20.0 bits (40), Expect = 0.39
Identities = 5/13 (38%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 435 KFTSPWSWGIGFE 447
+ + WS+G+GF+
Sbjct 161 RLNNSWSFGLGFD 173
Score = 17.3 bits (33), Expect = 2.7
Identities = 6/10 (60%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 478 INNAQLFGLG 487
+NN+ FGLG
Sbjct 162 LNNSWSFGLG 171
Lambda K H a alpha
0.319 0.137 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 430344
Database: b446c5716b45e73ce6b8ecc08ca3cf4f.SwissProt.fasta
Posted date: May 19, 2024 7:02 PM
Number of letters in database: 912
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
