BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9c1a0f7ef81a41be4066f8b9685d02be.SwissProt.fasta
15 sequences; 4,221 total letters
Query= ACIAD0679
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
Q6FEB3 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 546 0.0
B0V7R3 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 406 5e-148
B7I6D7 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 406 5e-148
A3M2K0 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 405 2e-147
B2HTX7 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 402 2e-146
B0VUQ6 Ribosomal RNA small subunit methyltransferase J [Acinetoba... 401 4e-146
Q4FR06 Ribosomal RNA small subunit methyltransferase J [Psychroba... 141 6e-44
Q1Q994 Ribosomal RNA small subunit methyltransferase J [Psychroba... 141 8e-44
B3PLF9 Ribosomal RNA small subunit methyltransferase J [Cellvibri... 132 1e-40
B8GQ90 Ribosomal RNA small subunit methyltransferase J [Thioalkal... 129 8e-40
Q87TJ6 Ribosomal RNA small subunit methyltransferase J [Vibrio pa... 127 9e-39
P72077 Ribosomal RNA small subunit methyltransferase J [Neisseria... 111 8e-33
Q9X6G2 Ribosomal RNA small subunit methyltransferase J [Salmonell... 89.4 1e-24
P68567 Ribosomal RNA small subunit methyltransferase J [Escherich... 84.7 7e-23
O07621 Heme-based aerotactic transducer HemAT [Bacillus subtilis ... 34.7 2e-05
>Q6FEB3 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=270
Score = 546 bits (1406), Expect = 0.0
Identities = 270/270 (100%), Positives = 270/270 (100%), Gaps = 0/270 (0%)
Query 1 MVKPMHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLW 60
MVKPMHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLW
Sbjct 1 MVKPMHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLW 60
Query 61 LSANGMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGA 120
LSANGMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGA
Sbjct 61 LSANGMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGA 120
Query 121 HVTLVERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIY 180
HVTLVERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIY
Sbjct 121 HVTLVERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIY 180
Query 181 LDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRP 240
LDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRP
Sbjct 181 LDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRP 240
Query 241 KHAVFLNEQQPDHQWQGDACRFDAYFQISM 270
KHAVFLNEQQPDHQWQGDACRFDAYFQISM
Sbjct 241 KHAVFLNEQQPDHQWQGDACRFDAYFQISM 270
>B0V7R3 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baumannii (strain AYE)]
Length=279
Score = 406 bits (1043), Expect = 5e-148
Identities = 195/263 (74%), Positives = 231/263 (88%), Gaps = 0/263 (0%)
Query 5 MHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLWLSAN 64
MH++ VD EQAQ +Q VL SR V+ +L IE+LNARFLR +P+LALCVD +GLWLSAN
Sbjct 17 MHMYFEVDFQEQAQHYQAVLHSRGVTVDLQPIEKLNARFLRLNPDLALCVDENGLWLSAN 76
Query 65 GMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTL 124
GMKMQPDW+AEIPRLKRASLKSEMIARACQ+ E+P L+DATAGLGHDSLLMAYLGA + L
Sbjct 77 GMKMQPDWKAEIPRLKRASLKSEMIARACQLGEKPVLVDATAGLGHDSLLMAYLGAQIQL 136
Query 125 VERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPM 184
VERHP+LFTLLED+K++A++DPFLS++M RI LIF D+ YLQQ +Q+++ VDV+YLDPM
Sbjct 137 VERHPILFTLLEDSKAQAQHDPFLSQFMDRIQLIFADSASYLQQLDQEEKTVDVVYLDPM 196
Query 185 FPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAV 244
FPQRDQ+ Q IKKQAQVKKQMQLLHLLLPEDGEMDLGD LL LA+++A RV+VKRP+HA+
Sbjct 197 FPQRDQNQQAIKKQAQVKKQMQLLHLLLPEDGEMDLGDHLLELAKKVAKRVIVKRPRHAI 256
Query 245 FLNEQQPDHQWQGDACRFDAYFQ 267
FL Q+P HQWQGDACRFDAYFQ
Sbjct 257 FLANQEPAHQWQGDACRFDAYFQ 279
>B7I6D7 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baumannii (strain AB0057)]
Length=279
Score = 406 bits (1043), Expect = 5e-148
Identities = 195/263 (74%), Positives = 231/263 (88%), Gaps = 0/263 (0%)
Query 5 MHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLWLSAN 64
MH++ VD EQAQ +Q VL SR V+ +L IE+LNARFLR +P+LALCVD +GLWLSAN
Sbjct 17 MHMYFEVDFQEQAQHYQAVLHSRGVTVDLQPIEKLNARFLRLNPDLALCVDENGLWLSAN 76
Query 65 GMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTL 124
GMKMQPDW+AEIPRLKRASLKSEMIARACQ+ E+P L+DATAGLGHDSLLMAYLGA + L
Sbjct 77 GMKMQPDWKAEIPRLKRASLKSEMIARACQLGEKPVLVDATAGLGHDSLLMAYLGAQIQL 136
Query 125 VERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPM 184
VERHP+LFTLLED+K++A++DPFLS++M RI LIF D+ YLQQ +Q+++ VDV+YLDPM
Sbjct 137 VERHPILFTLLEDSKAQAQHDPFLSQFMDRIQLIFADSASYLQQLDQEEKTVDVVYLDPM 196
Query 185 FPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAV 244
FPQRDQ+ Q IKKQAQVKKQMQLLHLLLPEDGEMDLGD LL LA+++A RV+VKRP+HA+
Sbjct 197 FPQRDQNQQAIKKQAQVKKQMQLLHLLLPEDGEMDLGDHLLELAKKVAKRVIVKRPRHAI 256
Query 245 FLNEQQPDHQWQGDACRFDAYFQ 267
FL Q+P HQWQGDACRFDAYFQ
Sbjct 257 FLANQEPAHQWQGDACRFDAYFQ 279
>A3M2K0 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025
/ NCDC KC755 / 5377)]
Length=279
Score = 405 bits (1040), Expect = 2e-147
Identities = 194/263 (74%), Positives = 231/263 (88%), Gaps = 0/263 (0%)
Query 5 MHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLWLSAN 64
MH++ VD EQAQ +Q VL SR V+ +L IE+LNARFLR +P+LALCVD +GLWLSAN
Sbjct 17 MHIYFEVDFQEQAQHYQAVLYSRGVTVDLQPIEKLNARFLRLNPDLALCVDENGLWLSAN 76
Query 65 GMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTL 124
GMKMQPDW+AEIPRLKRA+LKSEMIARACQ+ E+P L+DATAGLGHDSLLMAYLGA + L
Sbjct 77 GMKMQPDWKAEIPRLKRATLKSEMIARACQLGEKPVLVDATAGLGHDSLLMAYLGAQIQL 136
Query 125 VERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPM 184
VERHP+LFTLLED+K++A++DPFLS++M RI LIF D+ YLQQ +Q+++ VDV+YLDPM
Sbjct 137 VERHPILFTLLEDSKAQAQHDPFLSQFMDRIQLIFADSASYLQQLDQEEKTVDVVYLDPM 196
Query 185 FPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAV 244
FPQRDQ+ Q IKKQAQVKKQMQLLHLLLPEDGEMDLGD LL LA+++A RV+VKRP+HA+
Sbjct 197 FPQRDQNQQAIKKQAQVKKQMQLLHLLLPEDGEMDLGDHLLELAKKVAKRVIVKRPRHAI 256
Query 245 FLNEQQPDHQWQGDACRFDAYFQ 267
FL Q+P HQWQGDACRFDAYFQ
Sbjct 257 FLANQEPAHQWQGDACRFDAYFQ 279
>B2HTX7 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baumannii (strain ACICU)]
Length=279
Score = 402 bits (1032), Expect = 2e-146
Identities = 193/263 (73%), Positives = 228/263 (87%), Gaps = 0/263 (0%)
Query 5 MHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLWLSAN 64
MH++ VD EQAQ +Q VL SR V+ +L IE+LNARFLR +P+LALCVD +GLWLSAN
Sbjct 17 MHIYFEVDFQEQAQHYQAVLYSRGVTVDLQPIEKLNARFLRLNPDLALCVDENGLWLSAN 76
Query 65 GMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTL 124
GMKMQPDW+AEIPRLKRASLKSEMIARACQ+ E+P L+DATAGLGHDSLLMAYLGA + L
Sbjct 77 GMKMQPDWKAEIPRLKRASLKSEMIARACQLGEKPVLVDATAGLGHDSLLMAYLGAQIQL 136
Query 125 VERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPM 184
VERHP+LFTLLED+K++A+ DPFLS++M RI L+F D+ YLQQ +Q+ + VDV+YLDPM
Sbjct 137 VERHPILFTLLEDSKAQAQRDPFLSQFMDRIQLLFADSASYLQQLDQEAKTVDVVYLDPM 196
Query 185 FPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAV 244
FPQRDQ+ Q IKKQAQVKKQMQLLHLLLPEDGEMDLGD LL LA+++ RV+VKRP+HA+
Sbjct 197 FPQRDQNQQAIKKQAQVKKQMQLLHLLLPEDGEMDLGDHLLELAKKVVKRVIVKRPRHAI 256
Query 245 FLNEQQPDHQWQGDACRFDAYFQ 267
FL Q+P HQWQGDACRFDAYFQ
Sbjct 257 FLANQEPAHQWQGDACRFDAYFQ 279
>B0VUQ6 Ribosomal RNA small subunit methyltransferase J [Acinetobacter
baumannii (strain SDF)]
Length=279
Score = 401 bits (1031), Expect = 4e-146
Identities = 193/263 (73%), Positives = 229/263 (87%), Gaps = 0/263 (0%)
Query 5 MHLFAVVDALEQAQQFQQVLASRDVSTELVQIEQLNARFLRHHPELALCVDLDGLWLSAN 64
MH++ VD EQAQ +Q VL SR V+ +L IE+LNARFLR +P+LALCVD +GLWLSAN
Sbjct 17 MHIYFEVDFQEQAQHYQAVLHSRGVTVDLQPIEKLNARFLRLNPDLALCVDENGLWLSAN 76
Query 65 GMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTL 124
GMKMQPDW+AEIPRLKRASLKSEMIARACQ+ E+P L+DATAGLGHDSLLMAYLGA + L
Sbjct 77 GMKMQPDWKAEIPRLKRASLKSEMIARACQLGEKPVLVDATAGLGHDSLLMAYLGAQIQL 136
Query 125 VERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPM 184
VERHP+LFTLLED+K++A+ DPFLS++M RI LIF D+ YL+Q +Q+++ VDV+YLDPM
Sbjct 137 VERHPILFTLLEDSKAQAQRDPFLSQFMDRIQLIFADSASYLKQLDQEEKTVDVVYLDPM 196
Query 185 FPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAV 244
FPQRDQ+ Q IKKQAQVKKQMQLLHLLLPEDGEMDLG LL LA+++A RV+VKRP+HA+
Sbjct 197 FPQRDQNQQAIKKQAQVKKQMQLLHLLLPEDGEMDLGGHLLELAKKVAKRVIVKRPRHAI 256
Query 245 FLNEQQPDHQWQGDACRFDAYFQ 267
FL Q+P HQWQGDACRFDAYFQ
Sbjct 257 FLANQEPAHQWQGDACRFDAYFQ 279
>Q4FR06 Ribosomal RNA small subunit methyltransferase J [Psychrobacter
arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=296
Score = 141 bits (356), Expect = 6e-44
Identities = 84/219 (38%), Positives = 120/219 (55%), Gaps = 14/219 (6%)
Query 60 WLSANGMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLG 119
WLS +G+ + P+W R+ A KSE++ +A ++ +IDATAG GHDSL++A G
Sbjct 79 WLS-DGLSIAPEWDKLQRRVVSAGRKSELLLQATKMTADSKVIDATAGFGHDSLILASTG 137
Query 120 AHVTLVERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCN-----QDDR 174
A VT++E+HP++ LL + + P K M R+H+I DA Y + N +++
Sbjct 138 AQVTMLEQHPLMALLLLAEQQRMSTLPNWQKLMSRLHIINTDALSYFARFNNYLEADNEQ 197
Query 175 KVDVIYLDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIAS- 233
VDV+YLDPMFP+ K A+V K MQ LH L+ +D +LL AQ S
Sbjct 198 AVDVVYLDPMFPEDSYQDSKTGKGAKVGKHMQALHQLVCPP-TLDEEQKLLQSAQTFVSQ 256
Query 234 ------RVVVKRPKHAVFLNEQQPDHQWQGDACRFDAYF 266
RV+VKRP+ A L +P W +A RFD YF
Sbjct 257 QAQKQGRVIVKRPQFAPLLAHLEPSESWSNEAVRFDGYF 295
>Q1Q994 Ribosomal RNA small subunit methyltransferase J [Psychrobacter
cryohalolentis (strain ATCC BAA-1226 / DSM 17306 /
VKM B-2378 / K5)]
Length=296
Score = 141 bits (355), Expect = 8e-44
Identities = 85/219 (39%), Positives = 119/219 (54%), Gaps = 14/219 (6%)
Query 60 WLSANGMKMQPDWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLG 119
WLS G+ + P+W R+ A KSE++ +A ++ +IDATAG GHDSL++A G
Sbjct 79 WLS-EGLSVAPEWDKLQRRVVSAGRKSELLLQAAKLTADSEVIDATAGFGHDSLILASTG 137
Query 120 AHVTLVERHPVLFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQ-----DDR 174
A VT++E+ P++ LL + + P K M R+ +I DA Y + N +++
Sbjct 138 AQVTMLEQQPLMALLLLVEQLRMSTLPNWQKLMSRLQIINTDALTYFARFNNYLGNGNEQ 197
Query 175 KVDVIYLDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIAS- 233
+DVIYLDPMFP+ K A+V K MQ LH L +D QLL AQ + S
Sbjct 198 AIDVIYLDPMFPEDSYQDSKTGKGAKVGKHMQALH-QLAHPPTLDEEQQLLQSAQAVVSQ 256
Query 234 ------RVVVKRPKHAVFLNEQQPDHQWQGDACRFDAYF 266
RV+VKRP+ A L +QQP W +A RFD YF
Sbjct 257 NGQKQGRVIVKRPQFAPSLADQQPSESWNNEAVRFDGYF 295
>B3PLF9 Ribosomal RNA small subunit methyltransferase J [Cellvibrio
japonicus (strain Ueda107)]
Length=266
Score = 132 bits (331), Expect = 1e-40
Identities = 89/231 (39%), Positives = 128/231 (55%), Gaps = 25/231 (11%)
Query 49 ELALCVDLDGLWLSANGMKMQPDWQAEIP------RLKRASLKSEMIARACQINE--QPS 100
E L +D GL L G K +AE R K K +MIA+A + P
Sbjct 40 EFVLVLDETGLALQQTGRKAPGAVRAEFTEGAVDHRRKFGGGKGQMIAKAVGVKAGFSPR 99
Query 101 LIDATAGLGHDSLLMAYLGAHVTLVERHPVLFTLLEDAKSKAE-----NDPFLSKYMQRI 155
++DATAGLG D+ ++A LG + ++ER P++F LL D ++A D L + ++R+
Sbjct 100 VLDATAGLGRDAFVLATLGCRLQMIERSPLVFALLRDGLARAHAFAHAQDRELLQVVERM 159
Query 156 HLIFQDAHYYLQQCNQDDRKVDVIYLDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPED 215
L QD+ YLQ ++ DVIYLDPMFP+R +K A VKK+M+ H ++ D
Sbjct 160 ELAAQDSKTYLQGL-APEQFPDVIYLDPMFPER-------QKSADVKKEMRAFHSIVGTD 211
Query 216 GEMDLGDQLLPLA-QQIASRVVVKRPKHAVFLNEQQPDHQWQGDACRFDAY 265
+ D+ LLPLA + + RVVVKRP+ A FLN Q P +Q +G + R+D Y
Sbjct 212 EDADV---LLPLALEHVRFRVVVKRPRKAPFLNNQIPSYQLEGKSSRYDIY 259
>B8GQ90 Ribosomal RNA small subunit methyltransferase J [Thioalkalivibrio
sulfidiphilus (strain HL-EbGR7)]
Length=255
Score = 129 bits (325), Expect = 8e-40
Identities = 82/191 (43%), Positives = 114/191 (60%), Gaps = 14/191 (7%)
Query 78 RLKRASLKSEMIARACQI--NEQPSLIDATAGLGHDSLLMAYLGAHVTLVERHPVLFTLL 135
R R SL+SE +ARA I +E+PS++DATAGLG D ++A LG VTL+ER PV+ LL
Sbjct 73 RQARISLRSEPLARAVGIKDSERPSVVDATAGLGRDGFVLASLGCEVTLLEREPVIAALL 132
Query 136 EDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPMFPQRDQHHQVI 195
D +A D L++ + R+HL+ +A +L ++ R DVIYLDPM+P RD
Sbjct 133 ADGLERAARDADLAQTIARMHLVTGNARDWLTALDEAPRP-DVIYLDPMYPHRD------ 185
Query 196 KKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIAS-RVVVKRPKHAVFLNEQQPDHQ 254
K A VKK+M++ L+ +D + + L A +A RVVVKRP A L+ ++P HQ
Sbjct 186 -KSALVKKEMRVFRTLVGDDQD---APETLEAALAVAKRRVVVKRPARAEPLSGRKPSHQ 241
Query 255 WQGDACRFDAY 265
G RFD Y
Sbjct 242 IPGKTTRFDVY 252
>Q87TJ6 Ribosomal RNA small subunit methyltransferase J [Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)]
Length=259
Score = 127 bits (318), Expect = 9e-39
Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 11/198 (6%)
Query 78 RLKRASLKSEMIARACQINE--QPSLIDATAGLGHDSLLMAYLGAHVTLVERHPVLFTLL 135
R K K + IA+A +N+ P+++D TAGLG D+ ++A LG V +VERHPV+ LL
Sbjct 67 RRKFGGGKGQAIAKAAGLNKGATPTVLDGTAGLGRDAFVLASLGCKVQMVERHPVVAALL 126
Query 136 EDAKSKAENDPFLSKYM-QRIHLIFQDAHYYLQQCNQDDR--KVDVIYLDPMFPQRDQHH 192
+D ++A+ DP + ++ +R+ LI +H L Q QD K DV+YLDPM+P H
Sbjct 127 DDGLARAKQDPEIGTWVSERMSLIHASSHDALDQLAQDREFVKPDVVYLDPMYP----HP 182
Query 193 QVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAVFLNEQQPD 252
+ KK A VKK+M++ L+ D +D L P RVVVKRP +A +LNEQ+P
Sbjct 183 ENKKKSALVKKEMRVFQSLVGAD--LDADGLLEPALALATKRVVVKRPDYANWLNEQKPS 240
Query 253 HQWQGDACRFDAYFQISM 270
+ RFD Y + SM
Sbjct 241 MAIETKKNRFDVYVKASM 258
>P72077 Ribosomal RNA small subunit methyltransferase J [Neisseria
gonorrhoeae]
Length=250
Score = 111 bits (277), Expect = 8e-33
Identities = 74/196 (38%), Positives = 104/196 (53%), Gaps = 11/196 (6%)
Query 71 DWQAEIPRLKRASLKSEMIARACQINEQPSLIDATAGLGHDSLLMAYLGAHVTLVERHPV 130
D+ + + +R E+IA+A P++ DATAGLG DS ++A LG VT E+HP
Sbjct 57 DFTSGAAQYRRTKGGGELIAKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPA 116
Query 131 LFTLLEDAKSKAENDPFLSKYMQRIHLIFQDAHYYLQQCNQDDRKVDVIYLDPMFPQRDQ 190
+ LL D +A +P RI+L F +A + + K D++YLDPM+P+R
Sbjct 117 VACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPER-- 174
Query 191 HHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIA-SRVVVKRPKHAVFLNEQ 249
+K A VKK+M H L+ GE LL A+Q A RVVVKRP+ L Q
Sbjct 175 -----RKSAAVKKEMAYFHRLV---GEAQDEVVLLHTARQTAKKRVVVKRPRLGEHLAGQ 226
Query 250 QPDHQWQGDACRFDAY 265
P +Q+ G + RFD Y
Sbjct 227 APAYQYTGKSTRFDVY 242
Score = 16.9 bits (32), Expect = 7.0
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 0/39 (0%)
Query 228 AQQIASRVVVKRPKHAVFLNEQQPDHQWQGDACRFDAYF 266
A+Q+ + V + V+L+ P+ + + AYF
Sbjct 149 AEQMPALVKTQGKPDIVYLDPMYPERRKSAAVKKEMAYF 187
>Q9X6G2 Ribosomal RNA small subunit methyltransferase J [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=252
Score = 89.4 bits (220), Expect = 1e-24
Identities = 65/191 (34%), Positives = 97/191 (51%), Gaps = 15/191 (8%)
Query 78 RLKRASLKSEMIARACQINEQ--PSLIDATAGLGHDSLLMAYLGAHVTLVERHPVLFTLL 135
R K + E +A+A I P ++DATAGLG D+ ++A +G V ++ER+PV+ LL
Sbjct 67 RRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALL 126
Query 136 EDAKSKAENDPFLSKYMQ-RIHLIFQDAHYYLQQCNQDDRKVDVIYLDPMFPQRDQHHQV 194
+D ++ D + ++Q R+ LI + L + V+YLDPMFP R
Sbjct 127 DDGLTRGYADADIGGWLQERLQLIHASS---LTALTDITPRPQVVYLDPMFPHR------ 177
Query 195 IKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAVFLNEQQPDHQ 254
+K A VKK+M++ L+ D +D L P Q RVVVKRP +A L + +
Sbjct 178 -QKSALVKKEMRVFQSLVGPD--LDADGLLEPARQLATKRVVVKRPDYAPPLADVATPNA 234
Query 255 WQGDACRFDAY 265
RFD Y
Sbjct 235 IVTKGHRFDIY 245
>P68567 Ribosomal RNA small subunit methyltransferase J [Escherichia
coli (strain K12)]
Length=250
Score = 84.7 bits (208), Expect = 7e-23
Identities = 63/191 (33%), Positives = 95/191 (50%), Gaps = 15/191 (8%)
Query 78 RLKRASLKSEMIARACQINEQ--PSLIDATAGLGHDSLLMAYLGAHVTLVERHPVLFTLL 135
R K + E +A+A I P ++DATAGLG D+ ++A +G V ++ER+PV+ LL
Sbjct 67 RRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALL 126
Query 136 EDAKSKAENDPFLSKYMQ-RIHLIFQDAHYYLQQCNQDDRKVDVIYLDPMFPQRDQHHQV 194
+D ++ D + ++Q R+ LI + L + V+YLDPMFP +
Sbjct 127 DDGLARGYADAEIGGWLQERLQLIHASS---LTALTDITPRPQVVYLDPMFPHK------ 177
Query 195 IKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIASRVVVKRPKHAVFLNEQQPDHQ 254
+K A VKK+M++ L+ D +D L P RVVVKRP +A L +
Sbjct 178 -QKSALVKKEMRVFQSLVGPD--LDADGLLEPARLLATKRVVVKRPDYAPPLANVATPNA 234
Query 255 WQGDACRFDAY 265
RFD Y
Sbjct 235 VVTKGHRFDIY 245
>O07621 Heme-based aerotactic transducer HemAT [Bacillus subtilis
(strain 168)]
Length=432
Score = 34.7 bits (78), Expect = 2e-05
Identities = 21/64 (33%), Positives = 33/64 (52%), Gaps = 3/64 (5%)
Query 173 DRKVDVIYLDPMFPQRDQHHQVIKKQAQVKKQMQLLHLLLPEDGEMDLGDQLLPLAQQIA 232
DRK + Y Q+ Q+ K A VKKQ++++ L D E+ + +QL PL Q+
Sbjct 6 DRKQETAYFSDSNGQQKNRIQLTNKHADVKKQLKMVRL---GDAELYVLEQLQPLIQENI 62
Query 233 SRVV 236
+V
Sbjct 63 VNIV 66
Score = 18.9 bits (37), Expect = 1.8
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (2%)
Query 100 SLIDAT-AGLGHDSLLMAYLGAHVTLVERHPVLFTLLEDAKSKAENDPFLSK 150
+++DA L H+S LM + H ++ L +++ + +D F+ K
Sbjct 64 NIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVIDDEFIEK 115
Lambda K H a alpha
0.325 0.137 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 808347
Database: 9c1a0f7ef81a41be4066f8b9685d02be.SwissProt.fasta
Posted date: May 8, 2024 7:43 PM
Number of letters in database: 4,221
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
