Comparative Genomics

ACIAD0695 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: f34158a285da70d06a1ab5901c4d2b77.SwissProt.fasta
           17 sequences; 2,740 total letters



Query= ACIAD0695

Length=173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P35646 Fimbrial protein EcpB [Eikenella corrodens]                    38.5    1e-07
P36647 Prepilin peptidase-dependent protein D [Escherichia coli (...  37.7    2e-07
Q07565 Fimbrial protein EcpD [Eikenella corrodens]                    37.0    4e-07
P17826 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P02975 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P17822 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P27691 Fimbrial protein [Dichelobacter nodosus]                       37.0    4e-07
P27690 Fimbrial protein [Dichelobacter nodosus]                       37.0    4e-07
P27688 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P27906 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P17827 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
P17825 Fimbrial protein [Dichelobacter nodosus]                       37.0    4e-07
P27689 Type IV major fimbrial protein FimA [Dichelobacter nodosus]    37.0    4e-07
Q07564 Fimbrial protein EcpC [Eikenella corrodens]                    36.6    5e-07
Q00045 Type IV major pilin protein PilE1 [Neisseria gonorrhoeae]      37.0    6e-07
P11764 Type IV major pilin protein PilE [Neisseria gonorrhoeae]       36.6    6e-07
P04739 Type IV major pilin protein PilA [Pseudomonas aeruginosa (...  36.2    7e-07


>P35646 Fimbrial protein EcpB [Eikenella corrodens]
Length=159

 Score = 38.5 bits (88),  Expect = 1e-07
 Identities = 18/37 (49%), Positives = 23/37 (62%), Gaps = 0/37 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTI  43
           GFTLIE + V AII IL ++ LP Y  HMA  +   +
Sbjct  6   GFTLIELMIVIAIIGILAAIALPLYQDHMAKAQINRV  42


>P36647 Prepilin peptidase-dependent protein D [Escherichia coli 
(strain K12)]
Length=146

 Score = 37.7 bits (86),  Expect = 2e-07
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 12/79 (15%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTIPHILTIHIQKAKSEAVMYRHNVI  66
           GFTLIE + V  IIAIL ++G+PAY  ++  ++A     + T          V YR  V 
Sbjct  6   GFTLIELMVVIGIIAILSAIGIPAYQNYL--RKAALTDMLQTF---------VPYRTAVE  54

Query  67  ICP-SHDTQTCSDDWSNGL  84
           +C   H      D  SNG+
Sbjct  55  LCALEHGGLDTCDGGSNGI  73


>Q07565 Fimbrial protein EcpD [Eikenella corrodens]
Length=152

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 23/67 (34%), Positives = 32/67 (48%), Gaps = 4/67 (6%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTIPHILTIHIQKAKSEAVMYRHNVI  66
           GFTLIE + V AII IL ++ LPAY  + A  +      ++       KS       N +
Sbjct  7   GFTLIELMIVIAIIGILAAIALPAYQSYTARAQVSEAISLM----DGLKSSVADNYFNSM  62

Query  67  ICPSHDT  73
           IC  + T
Sbjct  63  ICADNQT  69


>P17826 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=158

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P02975 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=158

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P17822 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=160

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P27691 Fimbrial protein [Dichelobacter nodosus]
Length=160

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P27690 Fimbrial protein [Dichelobacter nodosus]
Length=160

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P27688 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=160

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P27906 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=161

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P17827 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=161

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P17825 Fimbrial protein [Dichelobacter nodosus]
Length=161

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>P27689 Type IV major fimbrial protein FimA [Dichelobacter nodosus]
Length=161

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 17/34 (50%), Positives = 24/34 (71%), Gaps = 0/34 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEA  40
           GFTLIE + V AII IL +  +PAY+ ++A  +A
Sbjct  7   GFTLIELMIVVAIIGILAAFAIPAYNDYIARSQA  40


>Q07564 Fimbrial protein EcpC [Eikenella corrodens]
Length=153

 Score = 36.6 bits (83),  Expect = 5e-07
 Identities = 17/33 (52%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQE  39
           GFTLIE + V AII IL ++ LPAY  ++A  +
Sbjct  8   GFTLIELMIVIAIIGILAAIALPAYQDYVARSQ  40


>Q00045 Type IV major pilin protein PilE1 [Neisseria gonorrhoeae]
Length=214

 Score = 37.0 bits (84),  Expect = 6e-07
 Identities = 35/123 (28%), Positives = 55/123 (45%), Gaps = 16/123 (13%)

Query  7    GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTIPHILTIHIQKAKSEAVMYRHNV-  65
            GFTLIE + V AI+ IL ++ LPAY  + A   A+    IL    QK+        H + 
Sbjct  7    GFTLIELMIVIAIVGILAAVALPAYQDYTA--RAQVSEAILLAEGQKSAVTEYYLNHGIW  64

Query  66   -------IICPSHDTQ---TCSDDWSNGLIMFLDRNRNRERDLDEKILSATQWNTR-YGS  114
                   +  P+ D +     S   +NG++    ++    +++  K LS   W  R  GS
Sbjct  65   PENNPAGVASPASDIKGKYVQSVTVANGVVTAQMKSDGVNKEIKNKKLSL--WARREAGS  122

Query  115  LHW  117
            + W
Sbjct  123  VKW  125


>P11764 Type IV major pilin protein PilE [Neisseria gonorrhoeae]
Length=167

 Score = 36.6 bits (83),  Expect = 6e-07
 Identities = 38/126 (30%), Positives = 54/126 (43%), Gaps = 22/126 (17%)

Query  7    GFTLIEFITVSAIIAILVSLGLPAYHRHMA-AQEARTIPHILTIHIQKAKSEAVMYRHNV  65
            GFTLIE + V AI+ IL ++ LPAY  + A AQ +  I     +  +  KS    Y  N 
Sbjct  7    GFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAI-----LLAEGQKSAVTEYYLNH  61

Query  66   IICPSHDTQTCSDDWS-------------NGLIMFLDRNRNRERDLDEKILSATQWNTRY  112
             I P  +T       S             NG++     + N  +++  K LS   W  R 
Sbjct  62   GIWPKDNTSAGVASSSSIKGKYVKEVKVENGVVTATMNSSNVNKEIQGKKLSL--WAKRQ  119

Query  113  -GSLHW  117
             GS+ W
Sbjct  120  DGSVKW  125


>P04739 Type IV major pilin protein PilA [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / 
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=149

 Score = 36.2 bits (82),  Expect = 7e-07
 Identities = 21/56 (38%), Positives = 31/56 (55%), Gaps = 2/56 (4%)

Query  7   GFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTIPHILTIHIQKAKSEAVMYR  62
           GFTLIE + V AII IL ++ +P Y  ++A  E  +   + TI+  K   E  + R
Sbjct  6   GFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASA--LATINPLKTTVEESLSR  59



Lambda      K        H        a         alpha
   0.327    0.137    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 291536


  Database: f34158a285da70d06a1ab5901c4d2b77.SwissProt.fasta
    Posted date:  May 20, 2024  1:12 AM
  Number of letters in database: 2,740
  Number of sequences in database:  17



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40