BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 883508dbab4fc81003812ee89d980c31.SwissProt.fasta
           6 sequences; 674 total letters



Query= ACIAD0719

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AFJ4 Protein YjdM [Shigella flexneri]                               174     4e-62
P0AFJ2 Protein YjdM [Escherichia coli O6:H1 (strain CFT073 / ATCC...  174     4e-62
P0AFJ3 Protein YjdM [Escherichia coli O157:H7]                        174     4e-62
P0AFJ1 Protein YjdM [Escherichia coli (strain K12)]                   174     4e-62
Q02419 Protein YjdM [Streptococcus mutans serotype c (strain ATCC...  148     4e-52
P44479 Protein YjdM homolog [Haemophilus influenzae (strain ATCC ...  127     9e-44


>P0AFJ4 Protein YjdM [Shigella flexneri]
Length=111

 Score = 174 bits (440),  Expect = 4e-62
 Identities = 81/113 (72%), Positives = 93/113 (82%), Gaps = 3/113 (3%)

Query  1    MSLPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENEIIKDANGNILADGDPVTV  60
            MSLPHCPKC SEYTY+DN + ICPECAYEW + E A   +  I+KDANGN+LADGD VT+
Sbjct  1    MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI  60

Query  61   IKDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKK  113
            IKDLK+KGSSS++K+GTKVKNIRLV      HNIDCKIDG G +KLKSEFVKK
Sbjct  61   IKDLKVKGSSSMLKIGTKVKNIRLV---EGDHNIDCKIDGFGPMKLKSEFVKK  110


>P0AFJ2 Protein YjdM [Escherichia coli O6:H1 (strain CFT073 / 
ATCC 700928 / UPEC)]
Length=111

 Score = 174 bits (440),  Expect = 4e-62
 Identities = 81/113 (72%), Positives = 93/113 (82%), Gaps = 3/113 (3%)

Query  1    MSLPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENEIIKDANGNILADGDPVTV  60
            MSLPHCPKC SEYTY+DN + ICPECAYEW + E A   +  I+KDANGN+LADGD VT+
Sbjct  1    MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI  60

Query  61   IKDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKK  113
            IKDLK+KGSSS++K+GTKVKNIRLV      HNIDCKIDG G +KLKSEFVKK
Sbjct  61   IKDLKVKGSSSMLKIGTKVKNIRLV---EGDHNIDCKIDGFGPMKLKSEFVKK  110


>P0AFJ3 Protein YjdM [Escherichia coli O157:H7]
Length=111

 Score = 174 bits (440),  Expect = 4e-62
 Identities = 81/113 (72%), Positives = 93/113 (82%), Gaps = 3/113 (3%)

Query  1    MSLPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENEIIKDANGNILADGDPVTV  60
            MSLPHCPKC SEYTY+DN + ICPECAYEW + E A   +  I+KDANGN+LADGD VT+
Sbjct  1    MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI  60

Query  61   IKDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKK  113
            IKDLK+KGSSS++K+GTKVKNIRLV      HNIDCKIDG G +KLKSEFVKK
Sbjct  61   IKDLKVKGSSSMLKIGTKVKNIRLV---EGDHNIDCKIDGFGPMKLKSEFVKK  110


>P0AFJ1 Protein YjdM [Escherichia coli (strain K12)]
Length=111

 Score = 174 bits (440),  Expect = 4e-62
 Identities = 81/113 (72%), Positives = 93/113 (82%), Gaps = 3/113 (3%)

Query  1    MSLPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENEIIKDANGNILADGDPVTV  60
            MSLPHCPKC SEYTY+DN + ICPECAYEW + E A   +  I+KDANGN+LADGD VT+
Sbjct  1    MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIVKDANGNLLADGDSVTI  60

Query  61   IKDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKK  113
            IKDLK+KGSSS++K+GTKVKNIRLV      HNIDCKIDG G +KLKSEFVKK
Sbjct  61   IKDLKVKGSSSMLKIGTKVKNIRLV---EGDHNIDCKIDGFGPMKLKSEFVKK  110


>Q02419 Protein YjdM [Streptococcus mutans serotype c (strain 
ATCC 700610 / UA159)]
Length=110

 Score = 148 bits (374),  Expect = 4e-52
 Identities = 73/113 (65%), Positives = 85/113 (75%), Gaps = 4/113 (4%)

Query  1    MSLPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENEIIKDANGNILADGDPVTV  60
            MSLP+CPKCQSEY Y+D  LL+CPECAYEW   E    +E  ++ DANG  LADGD VT+
Sbjct  1    MSLPNCPKCQSEYVYEDGILLVCPECAYEWNPAEVEK-EEGLVVIDANGKQLADGDTVTL  59

Query  61   IKDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKK  113
            IKDLK+KG+   +K GT+VKNIRLV      HNIDCKIDG G +KLKSEFVKK
Sbjct  60   IKDLKVKGAPKDLKQGTRVKNIRLV---EGDHNIDCKIDGFGAMKLKSEFVKK  109


>P44479 Protein YjdM homolog [Haemophilus influenzae (strain ATCC 
51907 / DSM 11121 / KW20 / Rd)]
Length=120

 Score = 127 bits (320),  Expect = 9e-44
 Identities = 63/113 (56%), Positives = 82/113 (73%), Gaps = 9/113 (8%)

Query  3    LPHCPKCQSEYTYQDNDLLICPECAYEWKEGEAAALDENE-IIKDANGNILADGDPVTVI  61
            +P+CPKCQSEY Y D+   +CP+C  EW   E    D+++ I+KD+NGN+LA+GD V +I
Sbjct  16   MPNCPKCQSEYVYHDSINFVCPDCGNEWDNNEIQESDDDQLIVKDSNGNLLAEGDNVLLI  75

Query  62   KDLKIKGSSSVVKVGTKVKNIRLVPDSSDGHNIDCKIDGIGQIKLKSEFVKKA  114
            KDLK+KGSS V+K GTK KNIRLV   +  HN+DC     G+I LKSEF+KKA
Sbjct  76   KDLKLKGSSEVLKKGTKFKNIRLV---NGDHNVDC-----GKIMLKSEFLKKA  120



Lambda      K        H        a         alpha
   0.318    0.138    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 48230


  Database: 883508dbab4fc81003812ee89d980c31.SwissProt.fasta
    Posted date:  May 30, 2024  7:09 AM
  Number of letters in database: 674
  Number of sequences in database:  6



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40