BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: acb29243a935a67a018095c840998f09.SwissProt.fasta
           17 sequences; 5,294 total letters



Query= ACIAD0746

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ACR5 Uncharacterized HTH-type transcriptional regulator YeiE [E...  218     2e-73
P0ACR6 Uncharacterized HTH-type transcriptional regulator YeiE [E...  218     2e-73
P0ACR4 Uncharacterized HTH-type transcriptional regulator YeiE [E...  218     2e-73
Q85G62 Probable RuBisCO transcriptional regulator [Cyanidioschyzo...  139     2e-42
P25544 RuBisCO operon transcriptional regulator [Allochromatium v...  133     2e-40
Q06610 RuBisCO operon transcriptional regulator [Acidithiobacillu...  131     1e-39
P73123 Probable RuBisCO transcriptional regulator [Synechocystis ...  131     3e-39
Q55459 HTH-type transcriptional activator CmpR [Synechocystis sp....  129     8e-39
Q8YQ82 Probable RuBisCO transcriptional regulator [Nostoc sp. (st...  127     6e-38
P39647 HTH-type transcriptional regulator CysL [Bacillus subtilis...  126     8e-38
Q3MCB5 Probable RuBisCO transcriptional regulator [Trichormus var...  125     5e-37
Q6B936 Probable RuBisCO transcriptional regulator [Gracilaria ten...  124     5e-37
Q9F1R2 HTH-type transcriptional activator CmpR [Synechococcus elo...  119     5e-35
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat...  108     7e-31
P52595 HTH-type transcriptional regulator CbbR [Rhodospirillum ru...  102     9e-29
P25545 HTH-type transcriptional regulator CbbR [Xanthobacter flavus]  102     1e-28
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ...  101     2e-28


>P0ACR5 Uncharacterized HTH-type transcriptional regulator YeiE 
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=293

 Score = 218 bits (556),  Expect = 2e-73
 Identities = 120/291 (41%), Positives = 178/291 (61%), Gaps = 4/291 (1%)

Query  1    MRMTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLN  60
            M +TLRQL VF  V + G+ T+AS  + L+QSA S AL DLE  LG  LFDR+GKRL +N
Sbjct  1    MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN  60

Query  61   DLGRFLLPQALEILGRCEAFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
            + GR L P+AL +L +    EQ  + +  +I  R+ A+ TI +Y++P ++A +   +PQ 
Sbjct  61   EHGRLLYPRALALLEQAVEIEQLFREDNGAI--RIYASSTIGNYILPAVIARYRHDYPQL  118

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             ++L VGN++ +++AV  F++D+  IEG CH  ++    W  DEL V  AP  PLA+   
Sbjct  119  PIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLAR--G  176

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
            P+T +      WILRE GSGTRE+ D  +L  +P   + + LG++EAI   V  GLG+SC
Sbjct  177  PVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISC  236

Query  241  ISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNFCE  291
            +SR  IE  ++ G L  +  P   L R L  + HRQK+    L+ F+++C+
Sbjct  237  LSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCD  287


>P0ACR6 Uncharacterized HTH-type transcriptional regulator YeiE 
[Escherichia coli O157:H7]
Length=293

 Score = 218 bits (556),  Expect = 2e-73
 Identities = 120/291 (41%), Positives = 178/291 (61%), Gaps = 4/291 (1%)

Query  1    MRMTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLN  60
            M +TLRQL VF  V + G+ T+AS  + L+QSA S AL DLE  LG  LFDR+GKRL +N
Sbjct  1    MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN  60

Query  61   DLGRFLLPQALEILGRCEAFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
            + GR L P+AL +L +    EQ  + +  +I  R+ A+ TI +Y++P ++A +   +PQ 
Sbjct  61   EHGRLLYPRALALLEQAVEIEQLFREDNGAI--RIYASSTIGNYILPAVIARYRHDYPQL  118

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             ++L VGN++ +++AV  F++D+  IEG CH  ++    W  DEL V  AP  PLA+   
Sbjct  119  PIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLAR--G  176

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
            P+T +      WILRE GSGTRE+ D  +L  +P   + + LG++EAI   V  GLG+SC
Sbjct  177  PVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISC  236

Query  241  ISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNFCE  291
            +SR  IE  ++ G L  +  P   L R L  + HRQK+    L+ F+++C+
Sbjct  237  LSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCD  287


>P0ACR4 Uncharacterized HTH-type transcriptional regulator YeiE 
[Escherichia coli (strain K12)]
Length=293

 Score = 218 bits (556),  Expect = 2e-73
 Identities = 120/291 (41%), Positives = 178/291 (61%), Gaps = 4/291 (1%)

Query  1    MRMTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLN  60
            M +TLRQL VF  V + G+ T+AS  + L+QSA S AL DLE  LG  LFDR+GKRL +N
Sbjct  1    MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVN  60

Query  61   DLGRFLLPQALEILGRCEAFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
            + GR L P+AL +L +    EQ  + +  +I  R+ A+ TI +Y++P ++A +   +PQ 
Sbjct  61   EHGRLLYPRALALLEQAVEIEQLFREDNGAI--RIYASSTIGNYILPAVIARYRHDYPQL  118

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             ++L VGN++ +++AV  F++D+  IEG CH  ++    W  DEL V  AP  PLA+   
Sbjct  119  PIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLEDELVVFAAPTSPLAR--G  176

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
            P+T +      WILRE GSGTRE+ D  +L  +P   + + LG++EAI   V  GLG+SC
Sbjct  177  PVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISC  236

Query  241  ISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNFCE  291
            +SR  IE  ++ G L  +  P   L R L  + HRQK+    L+ F+++C+
Sbjct  237  LSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCD  287


>Q85G62 Probable RuBisCO transcriptional regulator [Cyanidioschyzon 
merolae (strain NIES-3377 / 10D)]
Length=303

 Score = 139 bits (349),  Expect = 2e-42
 Identities = 96/300 (32%), Positives = 158/300 (53%), Gaps = 12/300 (4%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +F A+  EG+  KA+ ++ ++Q A S+ + +LE  L APLFDR  ++ +L + G
Sbjct  7    TLDQLRIFQAIVVEGSFQKAAQSLYISQPAVSLQIQNLEQQLNAPLFDRSHRKAKLTEAG  66

Query  64   RFLLPQALEILGRCEAFEQAAKG--ELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
            +     A  IL  CE   +A +    LQ+  L +GA+ TI  YL+P L+  F Q +P   
Sbjct  67   QVFFKYASRILALCEETCRALEDLHHLQAGSLIIGASQTIGTYLMPGLIGLFRQKYPHIC  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCH---LPQLQCIHWRNDELAVCCAPDHPLAKL  178
            +QLQV +TR++  +V +  +D+A+I G+     +P L    +  DEL +   PDHP A+L
Sbjct  127  VQLQVHSTRRIAWSVAKGHIDVAVIGGAIPTELIPLLSIQPFAEDELTLIVPPDHPFARL  186

Query  179  GRPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDAN---IRLTLGHNEAILKIVAGG  235
             + +  +D   + ++  +  S  R+V D  + Q+  D N   + + L   EAI   V  G
Sbjct  187  SK-IQKEDLYRLRFVSLDRHSTIRKVIDQILHQNGIDTNRLKMEMELNSIEAIKNAVQWG  245

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNFCENRVN  295
            LG + +S  AI   +E   +  +E     + R L+ + +  +YQ    KA   FC+  +N
Sbjct  246  LGAAFVSVCAIAKELELNLVREVEIEAISIKRQLYQITNPNRYQS---KAAFTFCQQMLN  302


>P25544 RuBisCO operon transcriptional regulator [Allochromatium 
vinosum]
Length=302

 Score = 133 bits (335),  Expect = 2e-40
 Identities = 94/292 (32%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query  1    MRMTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLN  60
            M ++LRQL VF AVA+  + T+A++ + L+Q A SM +  LED +G  LF+RLGK++ L 
Sbjct  1    MHVSLRQLRVFEAVARHNSYTRAAEELHLSQPAVSMQVRQLEDEIGLSLFERLGKQVVLT  60

Query  61   DLGR--FLLPQAL-EILGRCEAFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIH  117
            + GR  F   +A+ + L   E   ++ KG  +   LR+    T+ +Y  P LMA F Q H
Sbjct  61   EAGREVFHYSRAIGQSLREMEEVLESLKGVSRG-SLRIAVASTV-NYFAPRLMAIFQQRH  118

Query  118  PQAHLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAK  177
                L+L V N   +++ ++   +DL L+       +++   + ++ L V   PDHPLA 
Sbjct  119  SGIGLRLDVTNRESLVQMLDSNSVDLVLMGVPPRNVEVEAEAFMDNPLVVIAPPDHPLAG  178

Query  178  LGRPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLG  237
              R ++        +++REEGSGTR+  +    +        + +  NEA+ + V  GLG
Sbjct  179  -ERAISLARLAEETFVMREEGSGTRQAMERFFSERGQTIRHGMQMTRNEAVKQAVRSGLG  237

Query  238  MSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNF  289
            +S +S   IE  +E  +LV L+   +   R  +L+  R K   P   AF  F
Sbjct  238  LSVVSLHTIELELETRRLVTLDVEGFPDRRQWYLVYRRGKRLSPAAGAFREF  289


>Q06610 RuBisCO operon transcriptional regulator [Acidithiobacillus 
ferrooxidans]
Length=309

 Score = 131 bits (330),  Expect = 1e-39
 Identities = 92/288 (32%), Positives = 145/288 (50%), Gaps = 4/288 (1%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +F AVA+  +  +A++ + LT  A S+ +  L + +G PLFD++GK++ L   G
Sbjct  7    TLHQLKIFAAVARHMSFARAAEELHLTPPALSIQVRQLAEAVGQPLFDQIGKKIYLTAAG  66

Query  64   RFLLPQALEILGRCEAFEQ--AAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
              L     +IL R E F Q  AA   L+   L++ ATL+ + Y IP ++  F   HP   
Sbjct  67   EALTSACHDILDRLEYFTQEIAALQGLEKGSLKV-ATLSTTKYFIPRMLGGFCTEHPGVA  125

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGRP  181
              L +GN   ++E + + Q DL ++        +    + ++ L V    DHPL +  + 
Sbjct  126  TVLFIGNREVLLERLARNQDDLYILGQPPEHMNVVAEAFADNPLVVVARLDHPLTQ-EKD  184

Query  182  LTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSCI  241
            +      +V +ILRE GSGTR   +    Q       R+  G NEA+ + VAGGLG++ +
Sbjct  185  IEPSRLRDVPFILREPGSGTRLAAEKFFEQHGVILKTRMEFGSNEAVKQSVAGGLGITVL  244

Query  242  SRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNF  289
            S   I   +  G+L IL+   + L R  + +    K   P  KAFM +
Sbjct  245  SASTIRAELASGKLAILDVRGFPLERKWYAVYPAGKRISPRTKAFMEY  292


>P73123 Probable RuBisCO transcriptional regulator [Synechocystis 
sp. (strain PCC 6803 / Kazusa)]
Length=345

 Score = 131 bits (330),  Expect = 3e-39
 Identities = 94/292 (32%), Positives = 148/292 (51%), Gaps = 9/292 (3%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +  A+A EG+  +A+D + ++Q A S+ + +LE  L  PLFDR G++ QL + G
Sbjct  7    TLDQLRILKAIASEGSFKRAADTLYVSQPAVSLQVQNLEKQLSVPLFDRGGRKAQLTEAG  66

Query  64   RFLLPQALEILGRCEAFEQAAKG--ELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
              LL    +I+  C+   +A +    LQ   L +GA+ T   YL+P ++  F Q +P   
Sbjct  67   HLLLNYGEKIITLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPRMIGMFRQQYPDVT  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCHL---PQLQCIHWRNDELAVCCAPDHPLAKL  178
            +QLQV +TR+    V   Q+DLA+I G         L  + +  DELA+     HPLA+ 
Sbjct  127  VQLQVHSTRRTAWGVANGQVDLAIIGGEVPAELQETLTVLPYAEDELALILPVLHPLAQ-  185

Query  179  GRPLTAQDFLNVEWILREEGSGTREVFDNAILQ---DVPDANIRLTLGHNEAILKIVAGG  235
               +  +D   +++I  +  S  R+V D  + Q   D     I + L   EAI   V  G
Sbjct  186  AETIQKEDLYKLKFISLDSQSTIRKVIDKVLSQGEIDTKRLKIEMELNSIEAIKNAVQSG  245

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFM  287
            LG + +S  AIE  +E   L I      E+ R L ++++  +Y+     AF+
Sbjct  246  LGAAFVSTTAIEKELEMNVLHIAPIKNVEIRRVLSVIINPNRYRSKASAAFI  297


>Q55459 HTH-type transcriptional activator CmpR [Synechocystis 
sp. (strain PCC 6803 / Kazusa)]
Length=304

 Score = 129 bits (324),  Expect = 8e-39
 Identities = 83/291 (29%), Positives = 153/291 (53%), Gaps = 10/291 (3%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL Q  VF A+A+ G+ TKA++ + LTQ   S  +  L   +G PL++++G+++ L + G
Sbjct  5    TLHQFEVFAAIARTGSFTKAAEELFLTQPTVSQQMKQLTKAIGVPLYEQIGRKIYLTEAG  64

Query  64   RFLLPQALEILGRCEAFEQAAKGELQSI---DLRLGATLTISDYLIPDLMADFLQIHPQA  120
            + +L  +  I    +  ++    +LQ +   +LRL AT+T   Y +P L+ +F Q +P  
Sbjct  65   QAVLDASKNITSCLDQLQEVI-ADLQGLKKGNLRL-ATITTGKYFVPRLLGEFRQQYPGI  122

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             + LQ+GN +Q++E +     DL  +        +   H+  + L V  +  HPL K  +
Sbjct  123  SISLQIGNRQQILERLANNLDDLYFLGKPPSNLDINIRHFLENPLVVIASRQHPLVK-EK  181

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
             ++ +  +N   I+RE GSGTR   +    ++    N+ + +  NEAI + V GGLG+S 
Sbjct  182  KISLERLVNEPLIMRESGSGTRMAVEEFFSENRLKMNVEMEISSNEAIKQAVYGGLGISI  241

Query  241  IS--RLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNF  289
            +S   LA+E +   G L +L+   + L +  +++  + K      + F+++
Sbjct  242  LSLYSLALEGI--NGPLAVLDVEGFPLQKHWYIIYQKSKQLSIVAQTFLDY  290


>Q8YQ82 Probable RuBisCO transcriptional regulator [Nostoc sp. 
(strain PCC 7120 / SAG 25.82 / UTEX 2576)]
Length=337

 Score = 127 bits (320),  Expect = 6e-38
 Identities = 93/291 (32%), Positives = 146/291 (50%), Gaps = 9/291 (3%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +  A+A EG+  +A+D++ ++Q A S+ + +LE  L  PLFDR G+R QL + G
Sbjct  7    TLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAG  66

Query  64   RFLLPQALEILGRCEAFEQAAKG--ELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
              LL    +IL  C+   +A +    LQ   L +GA+ T   YL+P ++  F Q +P   
Sbjct  67   HLLLSYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVA  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCH---LPQLQCIHWRNDELAVCCAPDHPLAKL  178
            +QL V +TR+   +V   Q+DLA+I G         L+ I +  DELA+     HP  KL
Sbjct  127  VQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPFTKL  186

Query  179  GRPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDA---NIRLTLGHNEAILKIVAGG  235
               +  +D   +++I  +  S  R+V D  + +   D     I + L   EAI   V  G
Sbjct  187  D-TIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQSG  245

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAF  286
            LG + +S  AI   ++ G L         + R L L+ +  +Y+    +AF
Sbjct  246  LGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAF  296


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 20/84 (24%), Positives = 32/84 (38%), Gaps = 5/84 (6%)

Query  82   QAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAHLQLQVGNTRQMIEAVNQFQL  141
            +A K  +QS    LGA    +  +  +L    L   P   + ++   T  +I   N+++ 
Sbjct  236  EAIKNAVQS---GLGAAFVSTSAIAKELQMGVLHCTPIDGVVIK--RTLWLIFNPNRYRS  290

Query  142  DLALIEGSCHLPQLQCIHWRNDEL  165
              A       LPQ     W  D L
Sbjct  291  KAAEAFSQEILPQFATPDWNQDVL  314


>P39647 HTH-type transcriptional regulator CysL [Bacillus subtilis 
(strain 168)]
Length=299

 Score = 126 bits (317),  Expect = 8e-38
 Identities = 76/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (5%)

Query  8    LAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLGRFLL  67
            L  F+AV +E   TKA++ + ++Q + S+ + +LE      L +R  K       G  L 
Sbjct  6    LKTFIAVVEEKNFTKAAEKLMISQPSVSLHIKNLEKEFQTALLNRSPKHFTTTPTGDILY  65

Query  68   PQALEILGRCE-------AFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
             +A +++   E       A     KGEL     ++ A+ TI +Y++P L+A   +++P+ 
Sbjct  66   QRAKQMVFLYEQAKAEIYAHHHYVKGEL-----KIAASFTIGEYILPPLLAQLQKLYPEL  120

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
            +L + +GNT ++ E V   Q D+ LIEG  +  +L+   +  DE+ +     HPLA   +
Sbjct  121  NLDVMIGNTEEVSERVRMLQADIGLIEGHTNENELEIEPFMEDEMCIAAPNQHPLAG-RK  179

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
             ++  D  N  W+ RE+GSGTRE  D+ +  +        T+  N+ + + V  G+G+S 
Sbjct  180  EISISDLQNEAWVTREKGSGTREYLDHVLSSNGLRPKSMFTISSNQGVKEAVINGMGLSV  239

Query  241  ISRLAIEPLIEKGQLVILETPFWELTRPL  269
            +SR  +   +   ++ IL    + L R L
Sbjct  240  LSRSVLRKDLIHREISILHINNFSLKRKL  268


>Q3MCB5 Probable RuBisCO transcriptional regulator [Trichormus 
variabilis (strain ATCC 29413 / PCC 7937)]
Length=337

 Score = 125 bits (314),  Expect = 5e-37
 Identities = 92/291 (32%), Positives = 145/291 (50%), Gaps = 9/291 (3%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +  A+A EG+  +A+D++ ++Q A S+ + +LE  L  PLFDR G+R QL + G
Sbjct  7    TLDQLRILKAIAVEGSFKRAADSLYVSQPAVSLQVQNLERQLDVPLFDRGGRRAQLTEAG  66

Query  64   RFLLPQALEILGRCEAFEQAAKG--ELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
              LL    +IL  C+   +A +    LQ   L +GA+ T   YL+P ++  F Q +P   
Sbjct  67   HLLLNYGEKILSLCQETCRAIEDLQNLQGGTLIVGASQTTGTYLLPKMIGMFRQKYPDVA  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCH---LPQLQCIHWRNDELAVCCAPDHPLAKL  178
            +QL V +TR+   +V   Q+DLA+I G         L+ I +  DELA+     HP  K 
Sbjct  127  VQLHVHSTRRTAWSVANGQVDLAIIGGEIPGELTESLEIIPYAEDELALILPVFHPFTK-  185

Query  179  GRPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDA---NIRLTLGHNEAILKIVAGG  235
               +  +D   +++I  +  S  R+V D  + +   D     I + L   EAI   V  G
Sbjct  186  QETIQKEDLYKLQFITLDSQSTIRKVIDQVLSRSEIDTRRFKIEMELNSIEAIKNAVQSG  245

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAF  286
            LG + +S  AI   ++ G L         + R L L+ +  +Y+    +AF
Sbjct  246  LGAAFVSTSAIAKELQMGVLHCTPIDGVVIKRTLWLIFNPNRYRSKAAEAF  296


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 20/84 (24%), Positives = 32/84 (38%), Gaps = 5/84 (6%)

Query  82   QAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAHLQLQVGNTRQMIEAVNQFQL  141
            +A K  +QS    LGA    +  +  +L    L   P   + ++   T  +I   N+++ 
Sbjct  236  EAIKNAVQS---GLGAAFVSTSAIAKELQMGVLHCTPIDGVVIK--RTLWLIFNPNRYRS  290

Query  142  DLALIEGSCHLPQLQCIHWRNDEL  165
              A       LPQ     W  D L
Sbjct  291  KAAEAFSQEILPQFATPDWNQDVL  314


>Q6B936 Probable RuBisCO transcriptional regulator [Gracilaria 
tenuistipitata var. liui]
Length=309

 Score = 124 bits (312),  Expect = 5e-37
 Identities = 92/291 (32%), Positives = 149/291 (51%), Gaps = 9/291 (3%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TL QL +  A+ +EG+  +A+D++ ++Q A S+ + +LE  L  PLF+R  K+  L + G
Sbjct  7    TLDQLRILKAIVKEGSFKRAADSLYVSQPAISLQIQNLEKQLNIPLFERSNKKATLTEAG  66

Query  64   RFLLPQALEILGRCEAFEQAAKG--ELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
              LL     IL  CE   +A +    LQ  +L +GA+ T   YL+P L+  F Q +PQ +
Sbjct  67   NLLLRYGGRILALCEETCRALEDVQNLQGGNLVIGASQTTGTYLMPRLIGLFRQRYPQVN  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCH---LPQLQCIHWRNDELAVCCAPDHPLAKL  178
            +QLQV +TR +  +V   Q+DLA+I G         LQ   +  DELA+     H  +KL
Sbjct  127  VQLQVHSTRLISWSVANGQVDLAVIGGEVPNELKDTLQVTSYAEDELALILPTSHVFSKL  186

Query  179  GRPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDAN---IRLTLGHNEAILKIVAGG  235
               +  +D   + +I  +  S  R+V D  ++Q   D++   I + L   EAI   V  G
Sbjct  187  -PDIQKEDLYRLRFIALDTQSTIRKVIDKILIQHDIDSSRFKIEMELNSIEAIKNAVQSG  245

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAF  286
            LG + +S  AI   +E G L   +     + R L ++++  +Y+    + F
Sbjct  246  LGAAFVSVSAIAKELELGILHWAKIENVTIKRMLSIIINPNRYKSKAAETF  296


>Q9F1R2 HTH-type transcriptional activator CmpR [Synechococcus 
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=323

 Score = 119 bits (299),  Expect = 5e-35
 Identities = 85/290 (29%), Positives = 142/290 (49%), Gaps = 6/290 (2%)

Query  3    MTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDL  62
            +TL QL VF A A+  + T+A++ + LTQ   S+ +  L   +G PLF+++GKRL L + 
Sbjct  4    LTLHQLKVFEAAARHSSFTRAAEELYLTQPTVSIQVKQLTKAVGLPLFEQIGKRLYLTEA  63

Query  63   GRFLLPQALEILGRCEAFEQAAKGELQSI---DLRLGATLTISDYLIPDLMADFLQIHPQ  119
            GR L     ++  + E  +     +LQ +    LRL A +T + Y IP L+  F Q +P 
Sbjct  64   GRQLYKTTRQVFEQLEQLDMTI-ADLQGMKQGQLRL-AVITTAKYFIPRLIGPFCQRYPG  121

Query  120  AHLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLG  179
             ++ L+V N   +I  +N    DL ++        +    + ++ L V     HPLA   
Sbjct  122  INVSLKVTNHEGLINRINDNLDDLYVLSRPPSGFDITVQPFLDNPLVVVGPASHPLAN-Q  180

Query  180  RPLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMS  239
            R ++ +      +ILRE GSGTRE  +        + N++L LG NEAI + + GGLG++
Sbjct  181  RGISLERLAQEPFILRERGSGTREATEQLFAAHNLNLNVKLDLGSNEAIKQAILGGLGLA  240

Query  240  CISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNF  289
             +S   +       +L + E   + + R  H +    K        F+++
Sbjct  241  VLSYHTLTSAGATPELKMFEVEGFPIHRQWHAVYPAGKQLSTVAATFLDY  290


>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator 
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 
/ H16 / Stanier 337)]
Length=317

 Score = 108 bits (270),  Expect = 7e-31
 Identities = 81/290 (28%), Positives = 138/290 (48%), Gaps = 7/290 (2%)

Query  3    MTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDL  62
            +TLRQL +FV VA+  +  +A++ + LTQ A SM +  LE  +G  LF+R+  +L L + 
Sbjct  8    LTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEP  67

Query  63   GRFLLPQALEILGRCEAFEQA--AKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
            G  LL  A  ILG  +  E+   A  +++   + +G  ++ S Y  P L+A F  +HP  
Sbjct  68   GDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIG-LISTSKYFAPKLLAGFTALHPGV  126

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             L++  GN   ++  +    +DLAL+                    +  +P HPL    +
Sbjct  127  DLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPRHPLHD-AK  185

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
                Q+  +  ++LRE GSGTR V +      +      +TLG NE I + V  G+G+S 
Sbjct  186  GFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMGISL  245

Query  241  ISRLAIEPLIEKGQLVILE---TPFWELTRPLHLLVHRQKYQGPGLKAFM  287
            +S   +   +  G++ +L+   TP   +    H+   R        +A++
Sbjct  246  LSLHTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYL  295


>P52595 HTH-type transcriptional regulator CbbR [Rhodospirillum 
rubrum]
Length=298

 Score = 102 bits (254),  Expect = 9e-29
 Identities = 80/288 (28%), Positives = 140/288 (49%), Gaps = 9/288 (3%)

Query  5    LRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLGR  64
            LRQ+ +F AVA+  + + A+  + LTQ A S+ +  +E   G PLF+++G+ L L   G 
Sbjct  9    LRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPLFEQMGRVLLLTQAGT  68

Query  65   FLLPQALEILGR---CEAFEQAAKGELQSIDLRLGATLTISDYLIPDLMADFLQIHPQAH  121
             LL     IL      +    A KG+ ++  LR+G   T + Y  P L++ F   +P   
Sbjct  69   ILLGHVRTILAAVTDADKAMDALKGK-RAGALRIGVVST-AKYFAPRLLSVFTAGYPGVE  126

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGRP  181
            L L V N  Q++  + +  LDL ++      P ++      + + +  A DH    + R 
Sbjct  127  LGLTVANREQILGMIQENALDLFIMGRPPTEPAVRA-ELAPNPMVMVAASDH---LVRRK  182

Query  182  LTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSCI  241
            LT  D     +++RE GSGTR + +  +       +  + +  NE I + V  G+G+S +
Sbjct  183  LTFHDLSGETFLMREPGSGTRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISLL  242

Query  242  SRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNF  289
            SR  +   +  G+LVIL+     + R  ++++   K+  P  +A + F
Sbjct  243  SRNTMSLELSVGRLVILDVEGLPIQRDWYVVIREGKHLAPVAEAMVAF  290


>P25545 HTH-type transcriptional regulator CbbR [Xanthobacter 
flavus]
Length=333

 Score = 102 bits (255),  Expect = 1e-28
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 14/296 (5%)

Query  4    TLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDLG  63
            TLRQL +    A  G+  KA+  + L+  A +  +  LE+ +G P+F+R+  RL+    G
Sbjct  6    TLRQLRLVALAAASGSYAKAAQDMGLSPPAVTAQMKALEEDIGVPMFERVDGRLRPTAAG  65

Query  64   RFLLPQALEILGRCEAFEQAAKGELQSIDLR--LGATLTISDYLIPDLMADFLQIHPQAH  121
            + LL  A E + R  +  + A   L+S +    +   ++ + Y  P  +A F +  P+  
Sbjct  66   QELL-SAQERIARALSEAERAIAALKSPERGSVVVGVVSTAKYFAPMALAAFRRRRPEIE  124

Query  122  LQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQC-IHWRNDELAVCCAP-DHPLAKLG  179
            L+L +GN   +I  +     D+A++      P L+       D   +  AP DHPL K  
Sbjct  125  LRLIIGNREDIIRGIVSLDFDVAIM--GRPPPALEAETRLIGDHPHIVVAPVDHPLFKRR  182

Query  180  RPLTAQDFLNVEWILREEGSGTR----EVFDNAILQDVPDANIRLTLGHNEAILKIVAGG  235
            + +T  D      ++RE GSGTR     VF+ A     P+  I + +G NE I + V  G
Sbjct  183  KRITPADLTRESLLVREPGSGTRILMERVFEEA---GAPNPPIAMEIGSNETIKQSVMAG  239

Query  236  LGMSCISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMNFCE  291
            LG++ IS   +   +  G+L +LE     + R    +  R K   P  +A M+F E
Sbjct  240  LGLAFISAHTVAAEVADGRLRVLEVEGLPVVRQWLAVRARDKRLLPAGQALMDFLE  295


 Score = 19.2 bits (38),  Expect = 1.9
 Identities = 14/49 (29%), Positives = 18/49 (37%), Gaps = 5/49 (10%)

Query  138  QFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGRPLTAQD  186
            Q  +D    EG+  LPQ+        E   C  PDH          A+D
Sbjct  288  QALMDFLEREGASFLPQMP-----GGEGGRCYLPDHVSGSTPAKAVARD  331


>P27111 HTH-type transcriptional regulator CynR [Escherichia coli 
(strain K12)]
Length=299

 Score = 101 bits (252),  Expect = 2e-28
 Identities = 80/288 (28%), Positives = 135/288 (47%), Gaps = 6/288 (2%)

Query  3    MTLRQLAVFVAVAQEGTVTKASDAVRLTQSAASMALADLEDGLGAPLFDRLGKRLQLNDL  62
            M  R +  F+AVA+ G+ T+A+ A+ ++Q A S  +  LE+ LG PLFDR G+ ++L D 
Sbjct  1    MLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDA  60

Query  63   GRFLLPQALEILGRCEAFEQAAK--GELQSIDLRLGATLTISDYLIPDLMADFLQIHPQA  120
            G      A   L    A ++A     +L    LR+  T T + Y I  LMADF   +P  
Sbjct  61   GEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSI  120

Query  121  HLQLQVGNTRQMIEAVNQFQLDLALIEGSCHLPQLQCIHWRNDELAVCCAPDHPLAKLGR  180
             LQLQ  +  ++ + + + +LD+ +     H P+L+ I    + LA+  A  HPLA +  
Sbjct  121  TLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPLA-VHE  179

Query  181  PLTAQDFLNVEWILREEGSGTREVFDNAILQDVPDANIRLTLGHNEAILKIVAGGLGMSC  240
             +      + + +L      TRE  D+   +      + +      A+L+++     +S 
Sbjct  180  QVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIR-RTSLST  238

Query  241  ISRLAIEPLIEKGQLVILETPFWELTRPLHLLVHRQKYQGPGLKAFMN  288
            +   AI    +  + + L  P   L R   LL  +  +Q    KAF++
Sbjct  239  LLPAAIATQHDGLKAISLAPPL--LERTAVLLRRKNSWQTAAAKAFLH  284



Lambda      K        H        a         alpha
   0.326    0.140    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1128000


  Database: acb29243a935a67a018095c840998f09.SwissProt.fasta
    Posted date:  May 20, 2024  6:16 AM
  Number of letters in database: 5,294
  Number of sequences in database:  17



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40