BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 4472434d733b86ce97a328210bb1c6a7.SwissProt.fasta
           1 sequences; 189 total letters



Query= ACIAD0757

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O34643 Uncharacterized HTH-type transcriptional regulator YvkB [B...  33.9    5e-07


>O34643 Uncharacterized HTH-type transcriptional regulator YvkB 
[Bacillus subtilis (strain 168)]
Length=189

 Score = 33.9 bits (76),  Expect = 5e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query  24  LLEAAVEMFKTHGMMVPL-QVIIDHANVGRATFYRNFADRKMLVYALLEQ  72
           +L+AA+++    G      + I + ANV  AT +RNF +++ LV ALL Q
Sbjct  8   ILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQ  57


 Score = 18.1 bits (35),  Expect = 0.087
 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 0/15 (0%)

Query  183  DLLLNGICLNQEESH  197
            DLL  G CL +E  H
Sbjct  76   DLLHIGTCLLEELEH  90


 Score = 13.1 bits (22),  Expect = 3.7
 Identities = 4/13 (31%), Positives = 8/13 (62%), Gaps = 0/13 (0%)

Query  14  IKRAAKNREDLLE  26
           + + + NR  +LE
Sbjct  55  LSQHSSNRGSILE  67


 Score = 11.9 bits (19),  Expect = 8.8
 Identities = 7/29 (24%), Positives = 17/29 (59%), Gaps = 6/29 (21%)

Query  19   KNREDLLEAAVEMFKTHGMMVPLQVIIDH  47
            ++R+D+++ +   F+   M    Q +I+H
Sbjct  89   EHRKDIIKIS---FREPAMF---QDVINH  111



Lambda      K        H        a         alpha
   0.329    0.139    0.405    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 30251


  Database: 4472434d733b86ce97a328210bb1c6a7.SwissProt.fasta
    Posted date:  May 8, 2024  10:26 PM
  Number of letters in database: 189
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40