BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6c15db37c36b56cf0fc5c536730327fb.SwissProt.fasta
4 sequences; 923 total letters
Query= ACIAD0794
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
P0AAR7 Inner membrane protein YbaN [Shigella flexneri] 73.6 7e-22
P0AAR6 Inner membrane protein YbaN [Escherichia coli O157:H7] 73.6 7e-22
P0AAR5 Inner membrane protein YbaN [Escherichia coli (strain K12)] 73.6 7e-22
Q21629 LDL receptor repeat-containing protein egg-2 [Caenorhabdit... 33.9 2e-06
>P0AAR7 Inner membrane protein YbaN [Shigella flexneri]
Length=125
Score = 73.6 bits (179), Expect = 7e-22
Identities = 35/104 (34%), Positives = 59/104 (57%), Gaps = 2/104 (2%)
Query 14 IILGVIGAILPGMPTTVFLILAAWAASKGWPEMDEWLLNHPKYGPTLRDWRAHGTVPRKA 73
++LG +G +LP +PTT F++LAAW ++ P WLL +G LR W+ H +PR
Sbjct 14 VVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGV 73
Query 74 KWIASIMMLIS-AIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRP 116
K A +++L++ AI + F P WV++ + + ++W P
Sbjct 74 KPRAILLILLTFAISLWFVQMP-WVRIMLLVILACLLFYMWRIP 116
Score = 20.8 bits (42), Expect = 0.029
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 10/44 (23%)
Query 75 WIASIMMLISAIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRPEP 118
W+A ++ + ++ + PF +++A W + R P
Sbjct 11 WLAVVLGTLGVVLPVLPTTPF----------ILLAAWCFARSSP 44
>P0AAR6 Inner membrane protein YbaN [Escherichia coli O157:H7]
Length=125
Score = 73.6 bits (179), Expect = 7e-22
Identities = 35/104 (34%), Positives = 59/104 (57%), Gaps = 2/104 (2%)
Query 14 IILGVIGAILPGMPTTVFLILAAWAASKGWPEMDEWLLNHPKYGPTLRDWRAHGTVPRKA 73
++LG +G +LP +PTT F++LAAW ++ P WLL +G LR W+ H +PR
Sbjct 14 VVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGV 73
Query 74 KWIASIMMLIS-AIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRP 116
K A +++L++ AI + F P WV++ + + ++W P
Sbjct 74 KPRAILLILLTFAISLWFVQMP-WVRIMLLVILACLLFYMWRIP 116
Score = 20.8 bits (42), Expect = 0.029
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 10/44 (23%)
Query 75 WIASIMMLISAIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRPEP 118
W+A ++ + ++ + PF +++A W + R P
Sbjct 11 WLAVVLGTLGVVLPVLPTTPF----------ILLAAWCFARSSP 44
>P0AAR5 Inner membrane protein YbaN [Escherichia coli (strain
K12)]
Length=125
Score = 73.6 bits (179), Expect = 7e-22
Identities = 35/104 (34%), Positives = 59/104 (57%), Gaps = 2/104 (2%)
Query 14 IILGVIGAILPGMPTTVFLILAAWAASKGWPEMDEWLLNHPKYGPTLRDWRAHGTVPRKA 73
++LG +G +LP +PTT F++LAAW ++ P WLL +G LR W+ H +PR
Sbjct 14 VVLGTLGVVLPVLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGSYLRFWQKHHAMPRGV 73
Query 74 KWIASIMMLIS-AIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRP 116
K A +++L++ AI + F P WV++ + + ++W P
Sbjct 74 KPRAILLILLTFAISLWFVQMP-WVRIMLLVILACLLFYMWRIP 116
Score = 20.8 bits (42), Expect = 0.029
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 10/44 (23%)
Query 75 WIASIMMLISAIMMLFTNAPFWVKVFTDTTMLIVAIWLWLRPEP 118
W+A ++ + ++ + PF +++A W + R P
Sbjct 11 WLAVVLGTLGVVLPVLPTTPF----------ILLAAWCFARSSP 44
>Q21629 LDL receptor repeat-containing protein egg-2 [Caenorhabditis
elegans]
Length=548
Score = 33.9 bits (76), Expect = 2e-06
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query 9 LVVIFIILGVIGAILPGMPTTVFLILAAWAASKGWPEMDEWLLNHPKYGP 58
L+V IILGVI A+ P +FL +A A S G ++ + HPK P
Sbjct 52 LIVALIILGVIIAV----PLVIFLSPSAQAMSSGTRDLSSHSIRHPKVWP 97
Lambda K H a alpha
0.330 0.141 0.493 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 89210
Database: 6c15db37c36b56cf0fc5c536730327fb.SwissProt.fasta
Posted date: May 9, 2024 4:14 AM
Number of letters in database: 923
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
