BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 34e15dede708acc7f18111e30eb474b7.SwissProt.fasta
10 sequences; 2,541 total letters
Query= ACIAD0795
Length=168
Score E
Sequences producing significant alignments: (Bits) Value
Q65K99 Putative L,D-transpeptidase YkuD [Bacillus licheniformis (... 46.2 2e-10
O34816 Putative L,D-transpeptidase YkuD [Bacillus subtilis (strai... 45.1 5e-10
Q5WC42 Putative L,D-transpeptidase YkuD [Shouchella clausii (stra... 43.9 1e-09
P54539 Putative L,D-transpeptidase YqjB [Bacillus subtilis (strai... 41.2 1e-08
P0AAX9 Probable L,D-transpeptidase YbiS [Escherichia coli O6:H1 (... 41.6 2e-08
P0AAY0 Probable L,D-transpeptidase YbiS [Escherichia coli O157:H7] 41.6 2e-08
P0AAX8 Probable L,D-transpeptidase YbiS [Escherichia coli (strain... 41.6 2e-08
P39176 Probable L,D-transpeptidase ErfK/SrfK [Escherichia coli (s... 40.8 3e-08
P40680 Probable L,D-transpeptidase ErfK/SrfK [Salmonella typhimur... 39.7 7e-08
P76193 Probable L,D-transpeptidase YnhG [Escherichia coli (strain... 33.1 1e-05
>Q65K99 Putative L,D-transpeptidase YkuD [Bacillus licheniformis
(strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC
12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)]
Length=165
Score = 46.2 bits (108), Expect = 2e-10
Identities = 23/41 (56%), Positives = 29/41 (71%), Gaps = 1/41 (2%)
Query 112 TKQRYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
+KQ Y IHGT + +G A+S GCIRM NRDV+EL +VP
Sbjct 117 SKQHY-GIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVP 156
>O34816 Putative L,D-transpeptidase YkuD [Bacillus subtilis (strain
168)]
Length=164
Score = 45.1 bits (105), Expect = 5e-10
Identities = 23/41 (56%), Positives = 29/41 (71%), Gaps = 1/41 (2%)
Query 112 TKQRYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
+KQ Y IHGT + +G A+S GCIRM N+DVIEL +VP
Sbjct 116 SKQHY-GIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVP 155
>Q5WC42 Putative L,D-transpeptidase YkuD [Shouchella clausii (strain
KSM-K16)]
Length=165
Score = 43.9 bits (102), Expect = 1e-09
Identities = 20/34 (59%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
Query 119 IHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
IHGT D +G ++SHGCIRM N+DV EL VP
Sbjct 123 IHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVP 156
>P54539 Putative L,D-transpeptidase YqjB [Bacillus subtilis (strain
168)]
Length=176
Score = 41.2 bits (95), Expect = 1e-08
Identities = 20/56 (36%), Positives = 31/56 (55%), Gaps = 0/56 (0%)
Query 112 TKQRYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVPEYALVYLSEQRLTLD 167
T R IHGT E +G +S+GCIRM N +V+ LF +P V +++ + +
Sbjct 103 TDGRIYGIHGTNREESVGKFVSNGCIRMHNDEVVHLFQTIPVGTRVLITDDNRSFE 158
>P0AAX9 Probable L,D-transpeptidase YbiS [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=306
Score = 41.6 bits (96), Expect = 2e-08
Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 115 RYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
R IHGT +G+ +SHGC+R+RN D+ LF+ VP
Sbjct 189 RLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVP 226
>P0AAY0 Probable L,D-transpeptidase YbiS [Escherichia coli O157:H7]
Length=306
Score = 41.6 bits (96), Expect = 2e-08
Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 115 RYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
R IHGT +G+ +SHGC+R+RN D+ LF+ VP
Sbjct 189 RLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVP 226
>P0AAX8 Probable L,D-transpeptidase YbiS [Escherichia coli (strain
K12)]
Length=306
Score = 41.6 bits (96), Expect = 2e-08
Identities = 18/38 (47%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 115 RYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
R IHGT +G+ +SHGC+R+RN D+ LF+ VP
Sbjct 189 RLYAIHGTNANFGIGLRVSHGCVRLRNEDIKFLFEKVP 226
>P39176 Probable L,D-transpeptidase ErfK/SrfK [Escherichia coli
(strain K12)]
Length=310
Score = 40.8 bits (94), Expect = 3e-08
Identities = 21/48 (44%), Positives = 28/48 (58%), Gaps = 0/48 (0%)
Query 115 RYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVPEYALVYLSEQ 162
R IHGT +G+ +S GCIR+RN D+ LFD VP V + +Q
Sbjct 186 RLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQ 233
>P40680 Probable L,D-transpeptidase ErfK/SrfK [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=309
Score = 39.7 bits (91), Expect = 7e-08
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 115 RYIYIHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLVP 152
R IHGT +G+ +S GCIR+RN D+ LFD VP
Sbjct 186 RLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDHVP 223
>P76193 Probable L,D-transpeptidase YnhG [Escherichia coli (strain
K12)]
Length=334
Score = 33.1 bits (74), Expect = 1e-05
Identities = 15/33 (45%), Positives = 20/33 (61%), Gaps = 0/33 (0%)
Query 119 IHGTPDTEPMGIAMSHGCIRMRNRDVIELFDLV 151
IHGT + +G+ +S GCIRM D+ LF V
Sbjct 192 IHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSV 224
Lambda K H a alpha
0.323 0.141 0.438 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 287892
Database: 34e15dede708acc7f18111e30eb474b7.SwissProt.fasta
Posted date: May 9, 2024 10:00 AM
Number of letters in database: 2,541
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
