BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 43a4be6ae69d5e9082e0729152334460.SwissProt.fasta
3 sequences; 888 total letters
Query= ACIAD0800
Length=187
Score E
Sequences producing significant alignments: (Bits) Value
Q02E04 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aerug... 34.7 2e-06
B7V5P9 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aerug... 34.7 2e-06
Q9HTK0 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aerug... 34.7 2e-06
>Q02E04 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aeruginosa
(strain UCBPP-PA14)]
Length=296
Score = 34.7 bits (78), Expect = 2e-06
Identities = 21/53 (40%), Positives = 34/53 (64%), Gaps = 3/53 (6%)
Query 33 STNKISTK-AWIIMAVVLALSIAGIILLKNYSTIFCWVAIIGVV-LYYVLRKY 83
+T KIS + AWI AV++ALS G++LL N +T++ + V LY +++Y
Sbjct 93 ATGKISVREAWITFAVLVALSF-GLVLLTNATTVWLSFGAVAVASLYPFMKRY 144
Score = 15.0 bits (27), Expect = 4.0
Identities = 12/54 (22%), Positives = 22/54 (41%), Gaps = 13/54 (24%)
Query 36 KISTKAWIIMAVVLALSIAGIILLKNYSTIFCWVA-------------IIGVVL 76
++ +AW + +V GI LL + W+A ++GV+L
Sbjct 11 RLHPRAWDFVQLVRLDRPIGIYLLLWPTLWSLWIAADGVPELKNLLIFVLGVIL 64
>B7V5P9 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aeruginosa
(strain LESB58)]
Length=296
Score = 34.7 bits (78), Expect = 2e-06
Identities = 21/53 (40%), Positives = 34/53 (64%), Gaps = 3/53 (6%)
Query 33 STNKISTK-AWIIMAVVLALSIAGIILLKNYSTIFCWVAIIGVV-LYYVLRKY 83
+T KIS + AWI AV++ALS G++LL N +T++ + V LY +++Y
Sbjct 93 ATGKISVREAWITFAVLVALSF-GLVLLTNATTVWLSFGAVAVASLYPFMKRY 144
Score = 15.0 bits (27), Expect = 4.0
Identities = 12/54 (22%), Positives = 22/54 (41%), Gaps = 13/54 (24%)
Query 36 KISTKAWIIMAVVLALSIAGIILLKNYSTIFCWVA-------------IIGVVL 76
++ +AW + +V GI LL + W+A ++GV+L
Sbjct 11 RLHPRAWDFVQLVRLDRPIGIYLLLWPTLWSLWIAADGVPELKNLLIFVLGVIL 64
>Q9HTK0 4-hydroxybenzoate octaprenyltransferase [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=296
Score = 34.7 bits (78), Expect = 2e-06
Identities = 21/53 (40%), Positives = 34/53 (64%), Gaps = 3/53 (6%)
Query 33 STNKISTK-AWIIMAVVLALSIAGIILLKNYSTIFCWVAIIGVV-LYYVLRKY 83
+T KIS + AWI AV++ALS G++LL N +T++ + V LY +++Y
Sbjct 93 ATGKISVREAWITFAVLVALSF-GLVLLTNATTVWLSFGAVAVASLYPFMKRY 144
Score = 15.0 bits (27), Expect = 4.0
Identities = 12/54 (22%), Positives = 22/54 (41%), Gaps = 13/54 (24%)
Query 36 KISTKAWIIMAVVLALSIAGIILLKNYSTIFCWVA-------------IIGVVL 76
++ +AW + +V GI LL + W+A ++GV+L
Sbjct 11 RLHPRAWDFVQLVRLDRPIGIYLLLWPTLWSLWIAADGVPELKNLLIFVLGVIL 64
Lambda K H a alpha
0.327 0.140 0.440 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 125286
Database: 43a4be6ae69d5e9082e0729152334460.SwissProt.fasta
Posted date: May 30, 2024 8:51 AM
Number of letters in database: 888
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
