BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ea8f2b0cbb58fca7b9af5de5b6f74b48.SwissProt.fasta
           2 sequences; 514 total letters



Query= ACIAD0815

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76559 Uncharacterized protein YpfG [Escherichia coli (strain K12)]   65.5    3e-16
Q11PK7 Ribosome maturation factor RimP [Cytophaga hutchinsonii (s...  35.8    7e-07


>P76559 Uncharacterized protein YpfG [Escherichia coli (strain 
K12)]
Length=347

 Score = 65.5 bits (158),  Expect = 3e-16
 Identities = 79/318 (25%), Positives = 124/318 (39%), Gaps = 49/318 (15%)

Query  34   DWEVYCSNTGTCRAAGYQSDDGSQQPASILLTREAGSKQPVQAEFALAGDDQETFAANKI  93
            DW+V C+N   C A     + G      + L+R AG+           G      +  +I
Sbjct  30   DWQVTCNNQNFCVAR----NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEI  85

Query  94   KNIRFYVNGKDLGTVSVKGVDSP-LMGKLSTAQVNGLLQQATQKVDIVFKNNHYVWKISD  152
               R  ++G+ L     K   SP L+    TA +   LQ   +   I  ++      IS 
Sbjct  86   AP-RLLLDGEPLALSGDKWRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQT--ISL  142

Query  153  SGMTAALLKVDDFQKRIGTVGALVKKGKSDDSKVLMPQPKLVIKKVKTADQPYLTLNPKN  212
            SG+ AALL +D  QKR+G+  A +KKG      V  P P L    V       L+L  +N
Sbjct  143  SGLKAALLFIDAQQKRVGSETAWIKKGDEPPLSV-PPAPALKEVAVVNPTPTPLSLEERN  201

Query  213  K--QYAS--LYKLLMAAQPTPKEDGFCEGVYDFDSDAITAQSIELYKLTNNKVLATTLCW  268
                Y +  +  L  +  P  +E                   + +  LT++K L    C 
Sbjct  202  DLLDYGNWRMNGLRCSLDPLRRE-------------------VNVTALTDDKALMMISCE  242

Query  269  RGAYNEGYGAWVLNQSL--------------TGPATY---ITQSASDIASGIISSAQKGR  311
             GAYN    AW++++                 G  T    +  +  D  S  + +  KGR
Sbjct  243  AGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQETNELELMNATFDEKSRELVTLAKGR  302

Query  312  GIGDCWMSQSWIWNGQKY  329
            G+ DC +   W ++GQ++
Sbjct  303  GLSDCGIQARWRFDGQRF  320


>Q11PK7 Ribosome maturation factor RimP [Cytophaga hutchinsonii 
(strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / 
NCIMB 9469 / D465)]
Length=167

 Score = 35.8 bits (81),  Expect = 7e-07
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 10/91 (11%)

Query  140  VFKNNHYVWKISDSGMTAALLKVDDFQKRIG-TVGALVKKGK---------SDDSKVLMP  189
            +F +N YV ++S  GM   LL    +++RIG T+  L+  G          S++  V+MP
Sbjct  69   LFGDNAYVLEVSSPGMDRPLLVSRQYKRRIGNTLSFLLNDGTQFDAVLESVSEEGVVVMP  128

Query  190  QPKLVIKKVKTADQPYLTLNPKNKQYASLYK  220
             P+ V K  K      + + P+  ++  + K
Sbjct  129  APQKVKKSNKKEAVVDVAIEPRKLRFEEIKK  159



Lambda      K        H        a         alpha
   0.318    0.133    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 148708


  Database: ea8f2b0cbb58fca7b9af5de5b6f74b48.SwissProt.fasta
    Posted date:  May 20, 2024  12:18 AM
  Number of letters in database: 514
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40