BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: df57d565255e1029d9e3c7920f6efe16.SwissProt.fasta
           5 sequences; 1,393 total letters



Query= ACIAD0838

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P64432 Inner membrane protein YpjD [Escherichia coli (strain K12)]    112     9e-34
P64433 Inner membrane protein YpjD [Escherichia coli O6:H1 (strai...  112     9e-34
P64434 Inner membrane protein YpjD [Escherichia coli O157:H7]         112     9e-34
P45674 Uncharacterized 28.8 kDa protein in nifR3-like 5'region [A...  79.7    2e-21
B0CBA0 Cytochrome c biogenesis protein CcsA [Acaryochloris marina...  41.6    3e-08


>P64432 Inner membrane protein YpjD [Escherichia coli (strain 
K12)]
Length=263

 Score = 112 bits (281),  Expect = 9e-34
 Identities = 77/266 (29%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query  8    YTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDV  67
            + +LAL+AY+ S   +   L+ K    +  + ++  +  L+   +     + P G +   
Sbjct  4    FALLALVAYSVSLALIVPGLLQKNG-GWRRMAIISAVIALVCHAIALEARILPDGDSGQN  62

Query  68   FNLISFTSGLMLLLSLLFSTFRPVLALN-----LIGIPVAATGLILGYAFSRPDQYIE--  120
             +L++  S    L+SL+  T   ++A       L+ I  A   + L  A   P++YI   
Sbjct  63   LSLLNVGS----LVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHL  118

Query  121  QHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKKQKHRFWVNLLPPFQAMESLL  180
            + + G+  HI LSL +YA L++A ++A+ L + D +LK K+    +   +PP  ++E  +
Sbjct  119  EATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLA--FNQEMPPLMSIERKM  176

Query  181  FDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK  240
            F + + G  LLT+ L  G F + N  S     K V SI++WF+Y  LL GH   GWRG++
Sbjct  177  FHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRR  236

Query  241  AIRFTLMGFILLAIGFIGSKMILELI  266
             + F + G ++L + + GS+++ +LI
Sbjct  237  VVWFNVAGAVILTLAYFGSRIVQQLI  262


>P64433 Inner membrane protein YpjD [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=263

 Score = 112 bits (281),  Expect = 9e-34
 Identities = 77/266 (29%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query  8    YTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDV  67
            + +LAL+AY+ S   +   L+ K    +  + ++  +  L+   +     + P G +   
Sbjct  4    FALLALVAYSVSLALIVPGLLQKNG-GWRRMAIISAVIALVCHAIALEARILPDGDSGQN  62

Query  68   FNLISFTSGLMLLLSLLFSTFRPVLALN-----LIGIPVAATGLILGYAFSRPDQYIE--  120
             +L++  S    L+SL+  T   ++A       L+ I  A   + L  A   P++YI   
Sbjct  63   LSLLNVGS----LVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHL  118

Query  121  QHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKKQKHRFWVNLLPPFQAMESLL  180
            + + G+  HI LSL +YA L++A ++A+ L + D +LK K+    +   +PP  ++E  +
Sbjct  119  EATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLA--FNQEMPPLMSIERKM  176

Query  181  FDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK  240
            F + + G  LLT+ L  G F + N  S     K V SI++WF+Y  LL GH   GWRG++
Sbjct  177  FHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRR  236

Query  241  AIRFTLMGFILLAIGFIGSKMILELI  266
             + F + G ++L + + GS+++ +LI
Sbjct  237  VVWFNVAGAVILTLAYFGSRIVQQLI  262


>P64434 Inner membrane protein YpjD [Escherichia coli O157:H7]
Length=263

 Score = 112 bits (281),  Expect = 9e-34
 Identities = 77/266 (29%), Positives = 139/266 (52%), Gaps = 14/266 (5%)

Query  8    YTILALIAYTTSFWYLFMHLMSKRDPNYWFIGLVLGLGLLLHTGVLYNNMMTPIGINYDV  67
            + +LAL+AY+ S   +   L+ K    +  + ++  +  L+   +     + P G +   
Sbjct  4    FALLALVAYSVSLALIVPGLLQKNG-GWRRMAIISAVIALVCHAIALEARILPDGDSGQN  62

Query  68   FNLISFTSGLMLLLSLLFSTFRPVLALN-----LIGIPVAATGLILGYAFSRPDQYIE--  120
             +L++  S    L+SL+  T   ++A       L+ I  A   + L  A   P++YI   
Sbjct  63   LSLLNVGS----LVSLMICTVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHL  118

Query  121  QHSLGLDAHIILSLSAYAVLLMATIHAILLWFQDRELKKKQKHRFWVNLLPPFQAMESLL  180
            + + G+  HI LSL +YA L++A ++A+ L + D +LK K+    +   +PP  ++E  +
Sbjct  119  EATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLA--FNQEMPPLMSIERKM  176

Query  181  FDLLRTGFALLTIALIFGFFTVDNFLSQHLAHKTVFSIISWFIYGSLLIGHTKFGWRGQK  240
            F + + G  LLT+ L  G F + N  S     K V SI++WF+Y  LL GH   GWRG++
Sbjct  177  FHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRR  236

Query  241  AIRFTLMGFILLAIGFIGSKMILELI  266
             + F + G ++L + + GS+++ +LI
Sbjct  237  VVWFNVAGAVILTLAYFGSRIVQQLI  262


>P45674 Uncharacterized 28.8 kDa protein in nifR3-like 5'region 
[Azospirillum brasilense]
Length=271

 Score = 79.7 bits (195),  Expect = 2e-21
 Identities = 71/281 (25%), Positives = 123/281 (44%), Gaps = 24/281 (9%)

Query  2    ISLPLAYTILALIAYTTSFWYLFMHLMSKRDPN---YWFIGLVLGLG------LLLHTGV  52
            +S  + Y++ AL+A   +  Y +  +  +       Y++  LVLG        L    G 
Sbjct  1    MSQNIVYSLTALMALLPASIYPYHRIAGQGADGRSAYFWGALVLGFAGPAAWALTQVAGR  60

Query  53   LYNNMMTPIGINYDVFNLISFTSGLMLLLSLLFSTFRPVLALNLIGIPVAAT-GLILGYA  111
             +  + T + I           +  MLL   + +  R    L+ + +P   T G     A
Sbjct  61   WHTGLSTALWITI---------AACMLLFMAMSALTRSAWRLSPLLLPYLLTVGAFATLA  111

Query  112  FSRPDQYIEQHSLGL--DAHIILSLSAYAVLLMATIHAILLWFQDRELKKKQKHRFWVNL  169
               P   +   + G+  D HI +S+  YA+L MA + ++  + Q+R LK K+        
Sbjct  112  QQAPAPVVRGGAPGIWIDLHIAVSVITYALLTMAAVASLAAFLQERALKSKRPTPL-TRF  170

Query  170  LPPFQAMESLLFDLLRTGFALLTIALIFGFFTV--DNFLSQHLAHKTVFSIISWFIYGSL  227
            LPP    E +   LL    A+L   L  G   +  +        HKT+ S+ S+ + G L
Sbjct  171  LPPVTESERMQLHLLGASEAVLGAGLATGMAVLYYETGALLRADHKTLLSVASFVVIGGL  230

Query  228  LIGHTKFGWRGQKAIRFTLMGFILLAIGFIGSKMILELILG  268
            L+ H + G RG+ A R  L+ ++LL + + G K + +++LG
Sbjct  231  LLAHARTGVRGRMAARLVLIAYLLLTLAYPGVKFVTDVLLG  271


>B0CBA0 Cytochrome c biogenesis protein CcsA [Acaryochloris marina 
(strain MBIC 11017)]
Length=333

 Score = 41.6 bits (96),  Expect = 3e-08
 Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 2/104 (2%)

Query  161  QKHRFWVNLLPPFQAMESLLFDLLRTGFALLTIALIFGFFTVDNFLSQHLAH--KTVFSI  218
            Q   F +N +   +++++L + ++  GF LLT+ +I G    +       +   K  +++
Sbjct  219  QAPSFSLNRMSLAESLDNLSYRMIGLGFPLLTVGIIAGAVWANEAWGAPWSWDPKETWAL  278

Query  219  ISWFIYGSLLIGHTKFGWRGQKAIRFTLMGFILLAIGFIGSKMI  262
            I+W ++ + L      GW+G++       GF ++ + ++G  ++
Sbjct  279  ITWLVFAAYLHARITRGWQGRRPAYLATGGFFVVWVCYLGVNLL  322


 Score = 16.9 bits (32),  Expect = 2.4
 Identities = 5/13 (38%), Positives = 8/13 (62%), Gaps = 0/13 (0%)

Query  97   IGIPVAATGLILG  109
            +G P+   G+I G
Sbjct  244  LGFPLLTVGIIAG  256


 Score = 15.0 bits (27),  Expect = 9.6
 Identities = 5/16 (31%), Positives = 7/16 (44%), Gaps = 0/16 (0%)

Query  142  MATIHAILLWFQDREL  157
            + TIH +  W     L
Sbjct  82   VTTIHLLAEWLSRSRL  97



Lambda      K        H        a         alpha
   0.335    0.148    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 283842


  Database: df57d565255e1029d9e3c7920f6efe16.SwissProt.fasta
    Posted date:  May 19, 2024  8:15 PM
  Number of letters in database: 1,393
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40