Comparative Genomics

ACIAD0851 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8d03678a7d3e8e30212a373f8395d70c.TrEMBL.fasta
           11 sequences; 2,035 total letters



Query= ACIAD0851

Length=67
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FDV7 PDZ domain-containing protein [Acinetobacter baylyi (strai...  127     2e-44
A0A7G2SJX0 PDZ domain-containing protein [Acinetobacter sp]           127     2e-44
N9QYX0 PDZ domain-containing protein [Acinetobacter colistiniresi...  92.0    1e-28
N9Q047 PDZ domain-containing protein [Acinetobacter courvalinii]      89.7    1e-27
N9N5H3 PDZ domain-containing protein [Acinetobacter sp. CIP 64.2]     88.6    3e-27
N9RX68 PDZ domain-containing protein [Acinetobacter sp. NIPH 2100]    86.3    4e-27
N8PJA0 PDZ domain-containing protein [Acinetobacter modestus]         80.1    4e-25
A0A3S0ZMT3 PDZ domain-containing protein [Acinetobacter sp]           79.3    8e-25
N9NGZ3 PDZ domain-containing protein [Acinetobacter modestus]         80.1    5e-24
A0A0M3AA24 PDZ domain-containing protein [Acinetobacter sp. AG1]      80.1    5e-24
D4XJZ5 PDZ domain-containing protein [Acinetobacter haemolyticus ...  77.4    1e-23


>Q6FDV7 PDZ domain-containing protein [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=66

 Score = 127 bits (318),  Expect = 2e-44
 Identities = 65/66 (98%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

Query  1   VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
           +KVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM
Sbjct  1   MKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60

Query  61  KEIIIL  66
           KEIIIL
Sbjct  61  KEIIIL  66


>A0A7G2SJX0 PDZ domain-containing protein [Acinetobacter sp]
Length=66

 Score = 127 bits (318),  Expect = 2e-44
 Identities = 65/66 (98%), Positives = 66/66 (100%), Gaps = 0/66 (0%)

Query  1   VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
           +KVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM
Sbjct  1   MKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60

Query  61  KEIIIL  66
           KEIIIL
Sbjct  61  KEIIIL  66


>N9QYX0 PDZ domain-containing protein [Acinetobacter colistiniresistens]
Length=258

 Score = 92.0 bits (227),  Expect = 1e-28
 Identities = 44/65 (68%), Positives = 56/65 (86%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            VKVKVI   SPAF +++ +DI+LK+NDI VRDV++FVDIS+YLKKG I+ EILRKGQK+ 
Sbjct  193  VKVKVISKKSPAFGEILADDIILKINDIVVRDVSNFVDISNYLKKGTIKFEILRKGQKVT  252

Query  61   KEIII  65
            KEI+I
Sbjct  253  KEILI  257


>N9Q047 PDZ domain-containing protein [Acinetobacter courvalinii]
Length=258

 Score = 89.7 bits (221),  Expect = 1e-27
 Identities = 43/65 (66%), Positives = 54/65 (83%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            VK KVI   SPAF +++E+DI+LK+NDI VRDV+HFVDIS+YLKK  ++ EILRKGQK+ 
Sbjct  193  VKAKVISKKSPAFGEILEDDIILKMNDIVVRDVSHFVDISNYLKKETVKFEILRKGQKMT  252

Query  61   KEIII  65
            KEI I
Sbjct  253  KEISI  257


>N9N5H3 PDZ domain-containing protein [Acinetobacter sp. CIP 64.2]
Length=267

 Score = 88.6 bits (218),  Expect = 3e-27
 Identities = 43/65 (66%), Positives = 55/65 (85%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            VKVKVI   SPAF +++ +DI+LK+NDI VRDV++FVDIS+YL KG I+ EILRKGQK++
Sbjct  202  VKVKVISKKSPAFGEILADDIILKINDIVVRDVSNFVDISNYLNKGTIKFEILRKGQKMV  261

Query  61   KEIII  65
            KEI I
Sbjct  262  KEISI  266


>N9RX68 PDZ domain-containing protein [Acinetobacter sp. NIPH 
2100]
Length=172

 Score = 86.3 bits (212),  Expect = 4e-27
 Identities = 41/65 (63%), Positives = 53/65 (82%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            +K KVI   S AF +++E+DI+LK+NDI VRDV+HFVDIS+YLKK  ++ EILRKGQK+ 
Sbjct  107  IKAKVISKKSAAFGEILEDDIILKINDIVVRDVSHFVDISNYLKKETVKFEILRKGQKMT  166

Query  61   KEIII  65
            KEI I
Sbjct  167  KEISI  171


>N8PJA0 PDZ domain-containing protein [Acinetobacter modestus]
Length=130

 Score = 80.1 bits (196),  Expect = 4e-25
 Identities = 36/65 (55%), Positives = 55/65 (85%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            +K K I   SP+ + ++E+DI+LK+++I VRDV++FVDIS+YLK G ++LEILRKGQK++
Sbjct  65   IKAKYISKNSPSTDVILEDDIILKIDNIVVRDVSNFVDISNYLKNGKVELEILRKGQKLV  124

Query  61   KEIII  65
            KEI++
Sbjct  125  KEILL  129


>A0A3S0ZMT3 PDZ domain-containing protein [Acinetobacter sp]
Length=130

 Score = 79.3 bits (194),  Expect = 8e-25
 Identities = 36/65 (55%), Positives = 55/65 (85%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            +K K I   SP+ + ++E+DI+LK+++I VRDV++FVDIS+YLK G ++LEILRKGQK++
Sbjct  65   IKAKYISKNSPSTDVVLEDDIILKIDNIVVRDVSNFVDISNYLKHGKVELEILRKGQKLV  124

Query  61   KEIII  65
            KEI++
Sbjct  125  KEILL  129


>N9NGZ3 PDZ domain-containing protein [Acinetobacter modestus]
Length=255

 Score = 80.1 bits (196),  Expect = 5e-24
 Identities = 36/65 (55%), Positives = 55/65 (85%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            +K K I   SP+ + ++E+DI+LK+++I VRDV++FVDIS+YLK G ++LEILRKGQK++
Sbjct  190  IKAKYISKNSPSTDVILEDDIILKIDNIVVRDVSNFVDISNYLKNGKVELEILRKGQKLV  249

Query  61   KEIII  65
            KEI++
Sbjct  250  KEILL  254


>A0A0M3AA24 PDZ domain-containing protein [Acinetobacter sp. AG1]
Length=255

 Score = 80.1 bits (196),  Expect = 5e-24
 Identities = 36/65 (55%), Positives = 55/65 (85%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            +K K I   SP+ + ++E+DI+LK+++I VRDV++FVDIS+YLK G ++LEILRKGQK++
Sbjct  190  IKAKYISKNSPSTDVILEDDIILKIDNIVVRDVSNFVDISNYLKNGKVELEILRKGQKLV  249

Query  61   KEIII  65
            KEI++
Sbjct  250  KEILL  254


>D4XJZ5 PDZ domain-containing protein [Acinetobacter haemolyticus 
ATCC 19194]
Length=178

 Score = 77.4 bits (189),  Expect = 1e-23
 Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 0/65 (0%)

Query  1    VKVKVIKNLSPAFNQLIENDILLKLNDIEVRDVNHFVDISSYLKKGNIQLEILRKGQKIM  60
            VK KVI   SPAF  ++E+DI+LK N   +RDV++FVDIS+YL  G ++ EILRKGQK+ 
Sbjct  113  VKAKVIYKDSPAFGTILEDDIILKTNGNTIRDVSNFVDISNYLNSGTVEFEILRKGQKLN  172

Query  61   KEIII  65
            KEI I
Sbjct  173  KEISI  177


 Score = 13.5 bits (23),  Expect = 8.4
 Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 0/15 (0%)

Query  37   VDISSYLKKGNIQLE  51
            +D+S   K    QLE
Sbjct  97   IDLSDLDKSKTGQLE  111



Lambda      K        H        a         alpha
   0.331    0.150    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 71709


  Database: 8d03678a7d3e8e30212a373f8395d70c.TrEMBL.fasta
    Posted date:  May 30, 2024  12:13 PM
  Number of letters in database: 2,035
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40