BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: ebdca21c1680e243e9d39160ede3b5b5.SwissProt.fasta
5 sequences; 816 total letters
Query= ACIAD0878
Length=151
Score E
Sequences producing significant alignments: (Bits) Value
Q9ZJD5 Protoporphyrinogen IX oxidase [Helicobacter pylori (strain... 120 5e-40
O26018 Protoporphyrinogen IX oxidase [Helicobacter pylori (strain... 114 2e-37
P72793 Protoporphyrinogen IX oxidase [Synechocystis sp. (strain P... 105 3e-33
Q9ZC85 Protoporphyrinogen IX oxidase [Rickettsia prowazekii (stra... 100 7e-32
Q53229 Protoporphyrinogen IX oxidase [Cereibacter sphaeroides (st... 95.9 5e-30
>Q9ZJD5 Protoporphyrinogen IX oxidase [Helicobacter pylori (strain
J99 / ATCC 700824)]
Length=148
Score = 120 bits (302), Expect = 5e-40
Identities = 67/153 (44%), Positives = 96/153 (63%), Gaps = 11/153 (7%)
Query 1 MDAPSDAFLWVKALHIIAVVCWFAALFYLPRLYVYHAMSEDDTSHRR-----FEVMERKL 55
M+ S FLWVKA H+IAV+ W AALFYLPRL+VYHA + +H++ ++ E+KL
Sbjct 1 MEFLSGYFLWVKAFHVIAVISWMAALFYLPRLFVYHA----ENAHKKEFVGVVQIQEKKL 56
Query 56 YRGIMWPSMIATLITAHFLVDWGDATRHYHEALWFYIKVGLVGLLVIYHFVCGYYRKKLI 115
Y I P+M TLIT ++ A + W + K+ LV LL+IYHF C ++L
Sbjct 57 YSFIASPAMGFTLITGILMLLI--APEMFKSGGWLHAKLALVVLLLIYHFYCKKCMRELE 114
Query 116 GNAHYKSHKFWRYFNEMPTLILFAVVILVVVKP 148
+ K+ +F+R FNE+PT+++ +VILVVVKP
Sbjct 115 KDPTGKNARFYRVFNEIPTILMILIVILVVVKP 147
>O26018 Protoporphyrinogen IX oxidase [Helicobacter pylori (strain
ATCC 700392 / 26695)]
Length=148
Score = 114 bits (285), Expect = 2e-37
Identities = 62/146 (42%), Positives = 90/146 (62%), Gaps = 11/146 (8%)
Query 8 FLWVKALHIIAVVCWFAALFYLPRLYVYHAMSEDDTSHRR-----FEVMERKLYRGIMWP 62
FLWVKA H+IAV+ W AALFYLPRL+VYHA + +H++ ++ E+KLY I P
Sbjct 8 FLWVKAFHVIAVISWMAALFYLPRLFVYHA----ENAHKKEFVGVVQIQEKKLYSFIASP 63
Query 63 SMIATLITAHFLVDWGDATRHYHEALWFYIKVGLVGLLVIYHFVCGYYRKKLIGNAHYKS 122
+M TLIT ++ + W + K+ LV LL+ YHF C ++L + ++
Sbjct 64 AMGFTLITGILMLLIEPTL--FKSGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRRN 121
Query 123 HKFWRYFNEMPTLILFAVVILVVVKP 148
+F+R FNE PT+++ +VILVVVKP
Sbjct 122 ARFYRVFNEAPTILMILIVILVVVKP 147
>P72793 Protoporphyrinogen IX oxidase [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=210
Score = 105 bits (262), Expect = 3e-33
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 9/147 (6%)
Query 7 AFLWVKALHIIAVVCWFAALFYLPRLYVYHAMSEDDTS------HRRFEVMERKLYRGIM 60
A+ W KA H+I +V WFA LFYL RL+VYHA ++ + +++E+ME++LY I
Sbjct 19 AYYWFKAFHLIGIVVWFAGLFYLVRLFVYHAEADQEPEPAKTILKKQYELMEKRLYNIIT 78
Query 61 WPSMIATLITAHFLVDWGDATRHYHEALWFYIKVGLVGLLVIYHFVCGYYRKKLIGNAHY 120
P M+ T+ A L+ ++ W +IK+ V LL++YHF CG KKL
Sbjct 79 TPGMVVTVAMAIGLIF---TEPEILKSGWLHIKLTFVALLLLYHFYCGRVMKKLAQGESQ 135
Query 121 KSHKFWRYFNEMPTLILFAVVILVVVK 147
S + +R NE PT++L +V+L V K
Sbjct 136 WSGQQFRALNEAPTILLVVIVLLAVFK 162
Score = 16.2 bits (30), Expect = 1.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query 4 PSDAFLWVKALHIIAVVCWFAALFYL 29
P DA W+ I+A+V AA L
Sbjct 166 PLDATTWL----IVALVIAMAASIQL 187
>Q9ZC85 Protoporphyrinogen IX oxidase [Rickettsia prowazekii (strain
Madrid E)]
Length=145
Score = 100 bits (248), Expect = 7e-32
Identities = 55/146 (38%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query 8 FLWVKALHIIAVVCWFAALFYLPRLYVYHAMSEDDTS-HRRFEVMERKLYRGIMWPSMIA 66
+LW K+ H+I+ +CW A L YLPR+YVYH ++ + +VME KL R IM P+MI+
Sbjct 5 YLWFKSAHLISAICWMAGLLYLPRIYVYHTKAKIGSELDSTLQVMELKLLRFIMNPAMIS 64
Query 67 TLITAHFLVDWGDATRHYHEAL----WFYIKVGLVGLLVIYHFVCGYYRKKLIGNAHYKS 122
T I +G H + + WF K+ V +LVI+H + +RK + S
Sbjct 65 TFI-------FGLINAHIYGFVALDTWFQFKMFAVLILVIFHGLLARWRKDFAKGKNVHS 117
Query 123 HKFWRYFNEMPTLILFAVVILVVVKP 148
KF+R NE+P + + VI+V+VKP
Sbjct 118 KKFYRIVNEIPAICMVIAVIMVIVKP 143
>Q53229 Protoporphyrinogen IX oxidase [Cereibacter sphaeroides
(strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG
2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)]
Length=165
Score = 95.9 bits (237), Expect = 5e-30
Identities = 54/151 (36%), Positives = 79/151 (52%), Gaps = 16/151 (11%)
Query 5 SDAFLWVKALHIIAVVCWFAALFYLPRLYVYHA--MSEDDTSHRRFEVMERKLYRGIMWP 62
+D +LW K+LH+I+V+ W A LFYLPRL+VYHA + + F+ MER+L R IM P
Sbjct 17 ADYYLWTKSLHVISVLAWMAGLFYLPRLFVYHAEVVKAGTETDALFQTMERRLLRAIMNP 76
Query 63 SMIAT------LITAHFLVDWGDATRHYHEALWFYIKVGLVGLLVIYHFVCGYYRKKLIG 116
+MIAT L+ +VDW LW + K V + +H R+
Sbjct 77 AMIATWIFGLLLVFTPGIVDW--------SMLWPWTKAACVLAMTGFHMWLAARRRDFAA 128
Query 117 NAHYKSHKFWRYFNEMPTLILFAVVILVVVK 147
A+ + +R NE+PTL++ +V V K
Sbjct 129 GANRHKGRTYRMMNELPTLLMLVIVFSAVAK 159
Lambda K H a alpha
0.337 0.146 0.509 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 84444
Database: ebdca21c1680e243e9d39160ede3b5b5.SwissProt.fasta
Posted date: May 29, 2024 5:18 PM
Number of letters in database: 816
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
