BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5862004722088e43ae64b287e4bcc552.SwissProt.fasta
21 sequences; 15,108 total letters
Query= ACIAD0900
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
Q9L6S1 ATP-dependent DNA helicase Rep [Salmonella typhimurium (st... 666 0.0
P09980 ATP-dependent DNA helicase Rep [Escherichia coli (strain K... 666 0.0
P44804 ATP-dependent DNA helicase Rep [Haemophilus influenzae (st... 665 0.0
P57654 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.... 526 0.0
O51889 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.... 523 0.0
Q89A21 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.... 505 3e-174
P56255 ATP-dependent DNA helicase PcrA [Geobacillus stearothermop... 460 5e-156
Q8CRT9 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidi... 457 5e-155
Q5HN29 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidi... 456 1e-154
Q6GFF2 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 455 6e-154
P64319 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 455 6e-154
P64318 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 455 6e-154
Q5HEL7 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 455 6e-154
Q53727 ATP-dependent DNA helicase PcrA [Staphylococcus aureus (st... 455 6e-154
O34580 ATP-dependent DNA helicase PcrA [Bacillus subtilis (strain... 441 1e-148
P03018 DNA helicase II [Escherichia coli (strain K12)] 418 9e-140
Q05311 DNA helicase II [Salmonella typhimurium (strain LT2 / SGSC... 414 4e-138
P9WMQ1 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculos... 394 6e-130
Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907... 374 1e-122
P45612 Probable DNA helicase II homolog [Mycoplasma capricolum su... 367 3e-120
Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe... 274 1e-83
>Q9L6S1 ATP-dependent DNA helicase Rep [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=674
Score = 666 bits (1718), Expect = 0.0
Identities = 336/671 (50%), Positives = 473/671 (70%), Gaps = 6/671 (1%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN QQ A+++ GP LVLAGAGSGKT VIT KIA+L++ C A I A+TFTNKAARE
Sbjct 3 LNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
MKERV + L R++A+GL +STFHT GL++++ E +K+NFS+ D D +L +L +
Sbjct 63 MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELTE 122
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
+ K L+ + + IS+WKNDL P QA + + D FAH Y LY+ +++A N
Sbjct 123 G---LIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERDRIFAHCYGLYDAHMKACN 179
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
+DFDDLI+LPT LLQ N EVR++WQN+ RYLLVDEYQDTNT+QY LVKLLVG +FT
Sbjct 180 VLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFTV 239
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY+WRGA+P+N+ LL +DFP L+VIKLEQNYRS+ RILKAAN +I NNPH+F+
Sbjct 240 VGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFE 299
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
K+L+S+ G+G +++++ N++ E+ERV +L+ H +N +KDYA+LYRGN Q+RV E
Sbjct 300 KRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFE 359
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L Q +IPYK+SGG SFF+R EIKD+++YLR++ NP+DDSAFLRI+NTPKR IGP TL+
Sbjct 360 KFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLQ 419
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
KLG ++ + SL A+ D LS + + L F ++ R L + EPV VR
Sbjct 420 KLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQR--LAEREPVAAVRD 477
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
+++ Y ++ E + +P + ++ N+ LFS + +L E + + V+ + L
Sbjct 478 LIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLR 537
Query 547 DMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEEERRLMY 606
DM+E+ + EE+ D+V L+TLHA+KGLEFP+VY++G+EE LPH++SI D IEEERRL Y
Sbjct 538 DMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIEEERRLAY 597
Query 607 VGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKKKLAGNVDPKEQA 666
VGITRA++ LT TL ++R+ G++ + PSRFL ELPQD+L W +++K+ + ++
Sbjct 598 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIW-EQERKVVSAEERMQKG 656
Query 667 QQYLANLKALL 677
Q +LANLKA++
Sbjct 657 QSHLANLKAMM 667
>P09980 ATP-dependent DNA helicase Rep [Escherichia coli (strain
K12)]
Length=673
Score = 666 bits (1718), Expect = 0.0
Identities = 335/671 (50%), Positives = 473/671 (70%), Gaps = 6/671 (1%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN QQ+A+++ GP LVLAGAGSGKT VIT KIA+L++ C A I A+TFTNKAARE
Sbjct 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
MKERV + L R++A+GL +STFHT GL++++ E +K NFS+ D D +L +L +
Sbjct 63 MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE 122
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
+ K L+ + + IS+WKNDL P QA ++ D FAH Y LY+ +L+A N
Sbjct 123 G---LIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACN 179
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
+DFDDLI+LPT LLQ N EVR +WQN+ RYLLVDEYQDTNT+QY LVKLLVG +FT
Sbjct 180 VLDFDDLILLPTLLLQRNEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTV 239
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY+WRGA+P+N+ LL +DFP LKVIKLEQNYRS+ RILKAAN +I NNPH+F+
Sbjct 240 VGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFE 299
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
K+L+S+ G+G +++++ N++ E+ERV +L+ H +N +KDYA+LYRGN Q+RV E
Sbjct 300 KRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFE 359
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L Q +IPYK+SGG SFF+R EIKD+++YLR++ NP+DDSAFLRI+NTPKR IGP TL+
Sbjct 360 KFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLK 419
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
KLG ++ + S+ A+ D LS + + L F ++ R L + EP+ VR
Sbjct 420 KLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQR--LAEREPIAAVRD 477
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
+++ Y ++ E + +P + ++ N+ LFS + +L +E + + V+ + L
Sbjct 478 LIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLR 537
Query 547 DMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEEERRLMY 606
DM+E+ + EE+ D+V L+TLHA+KGLEFP+VY++G+EE LPH++SI D I+EERRL Y
Sbjct 538 DMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAY 597
Query 607 VGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKKKLAGNVDPKEQA 666
VGITRA++ LT TL ++R+ G++ + PSRFL ELPQD+L W +++K+ + ++
Sbjct 598 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIW-EQERKVVSAEERMQKG 656
Query 667 QQYLANLKALL 677
Q +LANLKA++
Sbjct 657 QSHLANLKAMM 667
>P44804 ATP-dependent DNA helicase Rep [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=670
Score = 665 bits (1717), Expect = 0.0
Identities = 342/672 (51%), Positives = 465/672 (69%), Gaps = 5/672 (1%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN +QQ+A++Y GP LVLAGAGSGKT VI KIA+L+++C +I A+TFTNKAARE
Sbjct 3 LNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAARE 62
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
MKERVA + +E +KGL VSTFHT G ++L+ E K K+N ++ D D +L +L
Sbjct 63 MKERVAHSIGKEQSKGLLVSTFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTA 122
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
D L E K+L+ + + IS+WKNDLI P+QA + + FA Y+ Y +R YN
Sbjct 123 -DVLK--EDKDLLRELISVISNWKNDLISPKQAFALARDAKYQTFAKCYERYATQIRTYN 179
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
A+DFDDLI+LPT L ++N EVR KWQ + RYLLVDEYQDTNT+QY L+KLLVG FT
Sbjct 180 ALDFDDLIMLPTLLFKQNEEVRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGDRACFTV 239
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY+WRGA+PENM L++DFP L VIKLEQNYRST RIL AN +I+NN H+FD
Sbjct 240 VGDDDQSIYSWRGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHCANILIDNNEHVFD 299
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
KKL+S G GE + +I +N++ E+ER+V +L+ H+ +KDYA+LYRGN Q+R+LE
Sbjct 300 KKLFSTIGKGEKLLVIEAKNEEHEAERIVAELIAHRFSRKTKYKDYAILYRGNHQSRLLE 359
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L Q +IPYK+SGG SFF+RAEIKD+M+YLRL++N +DD+AFLRI+NTPKR IG TL+
Sbjct 360 KVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGTATLQ 419
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
KLG +QE H+SL A + L I KA L +F +I E + EP VR
Sbjct 420 KLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE-IQRSEPERAVRS 478
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
M++ Y +Y+ E A +P + + N+ +LF + ++L E + N+ V+ +L L
Sbjct 479 MLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPMNLNQVVTRLTLR 538
Query 547 DMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEEERRLMY 606
DMLE+ ++++D+D+V L+TLHA+KGLEFP+VY++G+EE +LPH+ SI D +EEERRL Y
Sbjct 539 DMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSIDEDNVEEERRLAY 598
Query 607 VGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKKKLAGNVDPKEQA 666
VGITRA++ LT +L +R+ G++ + PSRFL ELP D++ W K KL +E+
Sbjct 599 VGITRAQKELTFSLCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLT-TEQKQEKT 657
Query 667 QQYLANLKALLK 678
Q L L+A+LK
Sbjct 658 QNQLDRLRAILK 669
>P57654 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS)]
Length=645
Score = 526 bits (1356), Expect = 0.0
Identities = 267/643 (42%), Positives = 415/643 (65%), Gaps = 5/643 (1%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN Q+ A++ T GP L+LAGAGSGKT VI KI YL+ C+ I A+TFTNKAA E
Sbjct 3 LNFSQKNAVELTNGPCLILAGAGSGKTKVIINKIIYLINHCQYEPDNIAAVTFTNKAAYE 62
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
M+ R++K L+ + K + +STFH+ GL +++ E+ L NNF++LD D +L + +
Sbjct 63 MRIRLSKYLNIPEIKKIIISTFHSLGLEIIKKEIDALELNNNFTLLDEKDQILLLKKICK 122
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
++ + + L+ K IS WKN + P Q ++ ++ FA++Y+ Y L N
Sbjct 123 KEIKNNIQ---LLKKLNFMISYWKNKFLTPLQVQLLAKSSQEKDFAYVYEQYTNYLYKAN 179
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
+DFDDLI +PT LL+ N +++ +WQ + YLLVDEYQDTN +QY L+K+L FT
Sbjct 180 ILDFDDLICMPTLLLKNNKKIKIRWQKKISYLLVDEYQDTNNSQYELIKMLANKNSDFTL 239
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY+WRGA P+N+ LLK+DFPNLK+IK+E NYRS+ RILKAAN++I NN H +
Sbjct 240 VGDDDQSIYSWRGANPQNIFLLKKDFPNLKIIKMEHNYRSSGRILKAANSLIANNIHYLE 299
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
KKL+S +G +I+++ +N+++E++++VK +++ ++D+A+LYRGN+Q+R+LE
Sbjct 300 KKLFSQLKYGNLIKVLIGKNEENEAQKIVKKIISQYAKKKIKYRDFAILYRGNYQSRILE 359
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L + IPY +S SFF+R EIKD++SYLR++IN +D+ AF+RI+N P R IG TL+
Sbjct 360 KALIKENIPYNISEKSSFFSRPEIKDLLSYLRVVINRDDNHAFMRIVNIPSRQIGKTTLK 419
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
KL ++ + H+SL A+ + + + + ++ F I FT +P +
Sbjct 420 KLEEWANKKHVSLFQASNNIEIKKFLNENTIKKIKNFISKIEKFT--AWSCLKPSNIIDD 477
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
++++ Y ++ + P + K ++N+ +L +N++ + + ++ ++ +
Sbjct 478 IVDDLEYEKWLSKFLKDPNKIKNSINNVHTLSQWFKNMIKGDDFEKPMTLFQIVTRMTIR 537
Query 547 DMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEEERRLMY 606
D+L+ +E D+V L+TLHA+KGLEFP V+I+G+ E +LP++ SI D IEEERRL Y
Sbjct 538 DILDDNIIKEQQDRVQLMTLHASKGLEFPAVFIIGMCEGILPNQKSIDNDNIEEERRLTY 597
Query 607 VGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649
VGITRA++ L T +R GQ+ M PSRFL ELPQ++L+W
Sbjct 598 VGITRAKKQLFFTYCYKRTQYGQILDMLPSRFLFELPQEDLKW 640
>O51889 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg)]
Length=658
Score = 523 bits (1348), Expect = 0.0
Identities = 280/647 (43%), Positives = 413/647 (64%), Gaps = 11/647 (2%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN Q+ A++ GP L+LAGAGSGKT VI KI YL+ C+ I A+TFTNKAA E
Sbjct 3 LNFNQKNAIELINGPCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFTNKAAHE 62
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
+K R+AK L+ K + +STFH+ GL +++ E+ +NFS+ D D +L +
Sbjct 63 IKVRLAKHLNLLQIKKMIISTFHSLGLEIIKKEINTLKFNSNFSLFDERDQMMLLKKICS 122
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
+ S +L+ K + IS WKN + P Q + ++ + FA Y+ Y +LR N
Sbjct 123 K---SIKNDTKLLKKLVFMISFWKNKFLTPLQVQLSAQSNLEKDFAFFYKQYTFHLRKSN 179
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
+DFDDLI +PT LL+ N ++++WQ + YLLVDEYQDTN +QY L+K+L V FT
Sbjct 180 ILDFDDLICIPTSLLKNNQIIQNRWQKKISYLLVDEYQDTNNSQYELIKMLTNVNSNFTL 239
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY+WRGAKP+N+ L+K+DFPNLK+IK+EQNYRS RILKAAN +I NN H F
Sbjct 240 VGDDDQSIYSWRGAKPQNLFLIKKDFPNLKIIKMEQNYRSYGRILKAANKLISNNLHYFK 299
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNG-KNWKDYAVLYRGNFQARVL 365
KKL+S+ +G I++I +N+ +E+E++ D + H+ N +KDYA+LYRGN+Q+++L
Sbjct 300 KKLFSNLEYGNKIKVIIGKNEKNEAEKIA-DKIIHECSNDIMQYKDYAILYRGNYQSQIL 358
Query 366 ETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTL 425
E + IPY +S SFF+R EIKD++SYLRLI+NP+D+ AF+RI+N P R IG TL
Sbjct 359 EKTFLKKNIPYDISTNSSFFSRPEIKDLLSYLRLIVNPDDNHAFIRILNIPHRQIGLTTL 418
Query 426 EKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR-ELLDDDEPVPKV 484
KL + + + SL + D + ++ ++ ++ +F +I + LL +D + K+
Sbjct 419 NKLEELASKKNKSLFQISNDIEIKKILRERTVKKIKDFIYWIKKIIKLSLLKEDIILDKI 478
Query 485 RQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLV 544
+N+ Y ++ + P + KT ++NI +L + ++ +L E N+ +++K+
Sbjct 479 ---INDIKYELWLTKILKEPKKIKTSINNIYTLSNWLKEMLRGNEFEKPMNLLQIVKKMT 535
Query 545 LLDMLEQ--QQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADTIEEER 602
L D+LE+ Q E ++V L+TLH++KGLEF V+I+G+ E +LP+ SI D IEEER
Sbjct 536 LRDILEKKIQINEIPKNRVQLMTLHSSKGLEFSSVFIIGMNEGILPNIKSINNDNIEEER 595
Query 603 RLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649
RL YVG+TRAR+ L T + R GQ PSRFL ELPQ++L+W
Sbjct 596 RLTYVGMTRARKELFFTYCQTRIQYGQKLYTAPSRFLFELPQEDLQW 642
>Q89A21 ATP-dependent DNA helicase Rep [Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp)]
Length=670
Score = 505 bits (1300), Expect = 3e-174
Identities = 278/676 (41%), Positives = 417/676 (62%), Gaps = 16/676 (2%)
Query 8 NDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAREM 67
N+ Q++A+ Y GP L+LAGAGSGKT VI KI +L+K C ITA+TFTNKAA EM
Sbjct 4 NEHQKKAISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAACEM 63
Query 68 KERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQR 127
K R+ +LS + + +STFH GL +++ E++ +K+NF+I D D IL +++ +
Sbjct 64 KSRILNVLSVNVSNLVKISTFHALGLEIIKSEIELLNIKSNFTIFDEQDQISILQEIVSK 123
Query 128 DNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYNA 187
E + + + + IS+WKN L+ P Q + + + +F Y+LY L++ N
Sbjct 124 ------EDRSFVRQIRQSISNWKNKLLCPNQVNKISNSSIEFKFFRYYELYNAYLKSSNI 177
Query 188 VDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTAV 247
+DFDDLI LPT LL++N R++W ++ +YLLVDEYQDTN QY L+KLL FT V
Sbjct 178 LDFDDLIFLPTILLRDNKLSRERWNDKIKYLLVDEYQDTNFIQYKLIKLLSSKRSNFTLV 237
Query 248 GDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFDK 307
GDDDQSIY+WRGA N LK D+PNL+ I ++ NYRS+ RILK ANA+I NN H F+K
Sbjct 238 GDDDQSIYSWRGANIHNFESLKHDYPNLRTIIMQHNYRSSGRILKVANALISNNLHFFNK 297
Query 308 KLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLET 367
KL+S+ +G ++ II+ +N++DE+ +++ LM HK +KDYA+LYR N+Q ++ E
Sbjct 298 KLFSNLDYGSIVEIISAKNEEDEARVILQTLMLHKSNYNAQYKDYAILYRSNYQVKIFEK 357
Query 368 QLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLEK 427
L + +IPYK+ SFF+R EIKD+++YLRLIINP+D++AFLR++N P R IG VTL+K
Sbjct 358 FLIKFKIPYKILANISFFSRPEIKDLIAYLRLIINPDDNAAFLRVVNRPLRGIGAVTLQK 417
Query 428 LGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQM 487
L +S++ + S A+ D L ++P L EF I T + ++ P+ + ++
Sbjct 418 LKEWSKKRNQSFFMASLDIGLESILPVHNLKSLQEFVYLIQTISYQI--QLNPIEVLEKL 475
Query 488 MNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLLD 547
+ Y ++ + NI + + I N L +K + + ++
Sbjct 476 VATIKYEKWLMRSLKFSKLYVASIKNISIVLNWIINELKYKIMNSKKFVMKYLIDIISEF 535
Query 548 MLEQQQEEE---DTDKVNLLTLHAAKGLEFPFVYIMGLEEELLP-HKNSIAADTIEEERR 603
+L+ E+ + D V L+TLHA+KGLEF +V+I+G+EE +LP ++N+ + I+EERR
Sbjct 536 ILQNSLNEDIVINNDYVQLMTLHASKGLEFLYVFIVGVEEGVLPYYRNTTMENNIDEERR 595
Query 604 LMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKKKLAGNVDPK 663
L YVGITRA++ L L+ A QR G + PSRFL ELPQ ++ W +K K+ N++ K
Sbjct 596 LAYVGITRAQKKLFLSYAIQRCQYGVVINTKPSRFLRELPQSDILW--QKSKIL-NLNEK 652
Query 664 EQAQQYLANLKALLKK 679
+ A K+L KK
Sbjct 653 NNF-LFKAYKKSLKKK 667
>P56255 ATP-dependent DNA helicase PcrA [Geobacillus stearothermophilus]
Length=724
Score = 460 bits (1183), Expect = 5e-156
Identities = 265/655 (40%), Positives = 403/655 (62%), Gaps = 16/655 (2%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+HLN +QQEA++ T+GPLL++AGAGSGKT V+T +IAYL+ + + I A+TFTNKAA
Sbjct 10 AHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REM+ERV LL A+ + +STFH+ + +LR ++ + NFSILD D ++ +
Sbjct 70 REMRERVQSLLGGA-AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTI 128
Query 125 MQRDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRA 184
++ N+ + + + IS KN+L+ PEQ T + + +YQ Y++ L
Sbjct 129 LKEKNIDPKKFEP--RTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLR 186
Query 185 YNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQF 244
+++DFDDLI+ +L +V +Q + +Y+ +DEYQDTN AQY LVK L
Sbjct 187 NHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNI 246
Query 245 TAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHI 304
AVGD DQSIY WRGA +N+ + D+PN KVI LEQNYRST RIL+AAN VIE+N +
Sbjct 247 CAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNR 306
Query 305 FDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARV 364
K++W++ G+ I N+ DE++ V + + ++D+AVLYR N Q+RV
Sbjct 307 KPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRV 366
Query 365 LETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVT 424
+E L + IPY++ GG F+ R EIKD+++YLR+I NP+DD + LRIIN PKR IG T
Sbjct 367 MEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGAST 426
Query 425 LEKLGLFSQENHLSLLAAAADQRLSMV-IPKKAASQLHEFADFITTFTRELLDDDEPVPK 483
++KL ++ ++ LSL A + L M+ + KAA L F + +T +L +
Sbjct 427 IDKLVRYAADHELSLFEALGE--LEMIGLGAKAAGALAAFRSQLEQWT-QLQEYVSVTEL 483
Query 484 VRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKL 543
V ++++++GY + ++ + AQ ++L+N++ S ++ N + D+K++ + + L
Sbjct 484 VEEVLDKSGYREMLKAERTIEAQ--SRLENLDEFLSVTKHFENVS---DDKSLIAFLTDL 538
Query 544 VL---LDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIA-ADTIE 599
L LD L+ ++ + D V L+TLHAAKGLEFP V+++G+EE + PH S+ D +E
Sbjct 539 ALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEME 598
Query 600 EERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKK 654
EERRL YVGITRA + L LT A+ R G ++ PSRFL+E+P LE R++
Sbjct 599 EERRLAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRRQ 653
>Q8CRT9 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
(strain ATCC 12228 / FDA PCI 1200)]
Length=729
Score = 457 bits (1177), Expect = 5e-155
Identities = 271/682 (40%), Positives = 410/682 (60%), Gaps = 27/682 (4%)
Query 6 HLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAR 65
++N +Q EA++ T+GPLL++AGAGSGKT V+T +IAYL+ + + + I A+TFTNKAA+
Sbjct 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66
Query 66 EMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLM 125
EMK RV L+ E+A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D++
Sbjct 67 EMKARVEHLVG-EEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVL 125
Query 126 QRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRA 184
+ +N+ +SK + + IS+ KN+L PE A A +Y+ Y+R L
Sbjct 126 KSENI---DSKRFEPRMFIGAISNLKNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSR 182
Query 185 YNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQF 244
A+DFDDLI+ L + E + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 183 NEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNL 242
Query 245 TAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHI 304
VGD DQSIY WRGA +N+ +ED+P K I LEQNYRST IL AAN VI++N
Sbjct 243 CVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER 302
Query 305 FDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARV 364
K LW+ G+ I+ + DE+E VVK++M H+ +GK + + A+LYR N Q+RV
Sbjct 303 KPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQ-RSGKKYSEMAILYRTNAQSRV 361
Query 365 LETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVT 424
LE + IPY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR IGP +
Sbjct 362 LEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSS 421
Query 425 LEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPVP 482
+EK+ ++ +N++S+ A A+ + + KK + F + I + E L+ E V
Sbjct 422 VEKIQTYALQNNISMFDALAEVDF-IGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVD 480
Query 483 KVRQMMNEAGYIDYI-REQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY D + REQ+ + +++L+N++ F S+ ++E +S+I
Sbjct 481 EVLQ---KSGYRDMLDREQS---IESRSRLENLDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE-WLGRKKKLA 657
EEERR+ YV ITRA + L +T A R G+ + PSRFL E+P+D L+ G+K++
Sbjct 591 EEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQ-- 648
Query 658 GNVDPKEQAQQYLANLKALLKK 679
+ PK Q ++ + KK
Sbjct 649 -TISPKSQPKRGFSKRTTSTKK 669
>Q5HN29 ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
(strain ATCC 35984 / RP62A)]
Length=729
Score = 456 bits (1174), Expect = 1e-154
Identities = 271/682 (40%), Positives = 410/682 (60%), Gaps = 27/682 (4%)
Query 6 HLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAR 65
++N +Q EA++ T+GPLL++AGAGSGKT V+T +IAYL+ + + + I A+TFTNKAA+
Sbjct 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66
Query 66 EMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLM 125
EMK RV L+ E+A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D++
Sbjct 67 EMKARVEHLVG-EEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVL 125
Query 126 QRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRA 184
+ +N+ +SK + + IS+ KN+L PE A A +Y+ Y+R L
Sbjct 126 KSENI---DSKRFEPRMFIGAISNLKNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSR 182
Query 185 YNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQF 244
A+DFDDLI+ L + E + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 183 NEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFKNL 242
Query 245 TAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHI 304
VGD DQSIY WRGA +N+ +ED+P K I LEQNYRST IL AAN VI++N
Sbjct 243 CVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEVIKHNSER 302
Query 305 FDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARV 364
K LW+ G+ I+ + DE+E VVK++M H+ +GK + + A+LYR N Q+RV
Sbjct 303 KPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQ-RSGKKYSEMAILYRTNAQSRV 361
Query 365 LETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVT 424
LE + IPY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR IGP +
Sbjct 362 LEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSS 421
Query 425 LEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPVP 482
+EK+ ++ +N++S+ A A+ + + KK + F + I + E L+ E V
Sbjct 422 VEKIQTYALQNNISMFDALAEVDF-IGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVD 480
Query 483 KVRQMMNEAGYIDYI-REQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY D + REQ+ + +++L+N++ F S+ ++E +S+I
Sbjct 481 EVLQ---KSGYRDMLDREQS---IESRSRLENLDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE-WLGRKKKLA 657
EEERR+ YV ITRA + L +T A R G+ + PSRFL E+P+D L+ G+K++
Sbjct 591 EEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQ-- 648
Query 658 GNVDPKEQAQQYLANLKALLKK 679
+ PK Q ++ + KK
Sbjct 649 -TIYPKSQPKRGFSKRTTSTKK 669
>Q6GFF2 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain MRSA252)]
Length=730
Score = 455 bits (1170), Expect = 6e-154
Identities = 260/650 (40%), Positives = 394/650 (61%), Gaps = 21/650 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+H+N +Q EA+K T+GPLL++AGAGSGKT V+T +IAYL+ + + + + A+TFTNKAA
Sbjct 6 NHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAA 65
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV KL+ + A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D+
Sbjct 66 REMKERVQKLVG-DQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ +N+ +SK+ + + IS+ KN+L P A A +Y Y+R L
Sbjct 125 LKNENI---DSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLS 181
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
A+DFDDLI+ L + EV + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 182 RNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKN 241
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA +N+ ++D+P I LEQNYRST IL AAN VI+NN
Sbjct 242 LCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSE 301
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW+ +GE I + DE+E V++++M H+ NGK ++D A+LYR N Q+R
Sbjct 302 RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQ-RNGKKYQDMAILYRTNAQSR 360
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
VLE + +PY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR +GP
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPV 481
++EK+ ++ +N++S+ A + + + KK + F + I + + E L+ E V
Sbjct 421 SVEKVQNYALQNNISMFDALGEADF-IGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIV 479
Query 482 PKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY + + + + +++L+NI+ F S+ ++E +S+I
Sbjct 480 DEVLQ---KSGYREMLERE--NTLESRSRLENIDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEGDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
+EERR+ YV ITRA + L +T A R G+ + PSRFL E+P+ LE
Sbjct 591 QEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLE 640
>P64319 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain N315)]
Length=730
Score = 455 bits (1170), Expect = 6e-154
Identities = 260/650 (40%), Positives = 394/650 (61%), Gaps = 21/650 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+H+N +Q EA+K T+GPLL++AGAGSGKT V+T +IAYL+ + + + + A+TFTNKAA
Sbjct 6 NHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAA 65
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV KL+ + A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D+
Sbjct 66 REMKERVQKLVG-DQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ +N+ +SK+ + + IS+ KN+L P A A +Y Y+R L
Sbjct 125 LKNENI---DSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLS 181
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
A+DFDDLI+ L + EV + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 182 RNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKN 241
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA +N+ ++D+P I LEQNYRST IL AAN VI+NN
Sbjct 242 LCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSE 301
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW+ +GE I + DE+E V++++M H+ NGK ++D A+LYR N Q+R
Sbjct 302 RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQ-RNGKKYQDMAILYRTNAQSR 360
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
VLE + +PY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR +GP
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPV 481
++EK+ ++ +N++S+ A + + + KK + F + I + + E L+ E V
Sbjct 421 SVEKVQNYALQNNISMFDALGEADF-IGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIV 479
Query 482 PKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY + + + + +++L+NI+ F S+ ++E +S+I
Sbjct 480 DEVLQ---KSGYREMLERE--NTLESRSRLENIDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
+EERR+ YV ITRA + L +T A R G+ + PSRFL E+P+ LE
Sbjct 591 QEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLE 640
>P64318 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain Mu50 / ATCC 700699)]
Length=730
Score = 455 bits (1170), Expect = 6e-154
Identities = 260/650 (40%), Positives = 394/650 (61%), Gaps = 21/650 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+H+N +Q EA+K T+GPLL++AGAGSGKT V+T +IAYL+ + + + + A+TFTNKAA
Sbjct 6 NHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAA 65
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV KL+ + A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D+
Sbjct 66 REMKERVQKLVG-DQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ +N+ +SK+ + + IS+ KN+L P A A +Y Y+R L
Sbjct 125 LKNENI---DSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLS 181
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
A+DFDDLI+ L + EV + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 182 RNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKN 241
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA +N+ ++D+P I LEQNYRST IL AAN VI+NN
Sbjct 242 LCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSE 301
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW+ +GE I + DE+E V++++M H+ NGK ++D A+LYR N Q+R
Sbjct 302 RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQ-RNGKKYQDMAILYRTNAQSR 360
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
VLE + +PY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR +GP
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPV 481
++EK+ ++ +N++S+ A + + + KK + F + I + + E L+ E V
Sbjct 421 SVEKVQNYALQNNISMFDALGEADF-IGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIV 479
Query 482 PKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY + + + + +++L+NI+ F S+ ++E +S+I
Sbjct 480 DEVLQ---KSGYREMLERE--NTLESRSRLENIDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
+EERR+ YV ITRA + L +T A R G+ + PSRFL E+P+ LE
Sbjct 591 QEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLE 640
>Q5HEL7 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain COL)]
Length=730
Score = 455 bits (1170), Expect = 6e-154
Identities = 260/650 (40%), Positives = 394/650 (61%), Gaps = 21/650 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+H+N +Q EA+K T+GPLL++AGAGSGKT V+T +IAYL+ + + + + A+TFTNKAA
Sbjct 6 NHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAA 65
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV KL+ + A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D+
Sbjct 66 REMKERVQKLVG-DQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ +N+ +SK+ + + IS+ KN+L P A A +Y Y+R L
Sbjct 125 LKNENI---DSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLS 181
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
A+DFDDLI+ L + EV + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 182 RNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKN 241
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA +N+ ++D+P I LEQNYRST IL AAN VI+NN
Sbjct 242 LCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSE 301
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW+ +GE I + DE+E V++++M H+ NGK ++D A+LYR N Q+R
Sbjct 302 RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQ-RNGKKYQDMAILYRTNAQSR 360
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
VLE + +PY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR +GP
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPV 481
++EK+ ++ +N++S+ A + + + KK + F + I + + E L+ E V
Sbjct 421 SVEKVQNYALQNNISMFDALGEADF-IGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIV 479
Query 482 PKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY + + + + +++L+NI+ F S+ ++E +S+I
Sbjct 480 DEVLQ---KSGYREMLERE--NTLESRSRLENIDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
+EERR+ YV ITRA + L +T A R G+ + PSRFL E+P+ LE
Sbjct 591 QEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLE 640
>Q53727 ATP-dependent DNA helicase PcrA [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=730
Score = 455 bits (1170), Expect = 6e-154
Identities = 260/650 (40%), Positives = 394/650 (61%), Gaps = 21/650 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
+H+N +Q EA+K T+GPLL++AGAGSGKT V+T +IAYL+ + + + + A+TFTNKAA
Sbjct 6 NHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAA 65
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV KL+ + A+ + +STFH+ + +LR + ++ NF+I+D D K ++ D+
Sbjct 66 REMKERVQKLVG-DQAEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDV 124
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ +N+ +SK+ + + IS+ KN+L P A A +Y Y+R L
Sbjct 125 LKNENI---DSKKFEPRMFIGAISNLKNELKTPADAQKEATDYHSQMVATVYSGYQRQLS 181
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
A+DFDDLI+ L + EV + +QN+ +Y+ VDEYQDTN AQY LVKLL
Sbjct 182 RNEALDFDDLIMTTINLFERVPEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKN 241
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA +N+ ++D+P I LEQNYRST IL AAN VI+NN
Sbjct 242 LCVVGDSDQSIYGWRGADIQNILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSE 301
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW+ +GE I + DE+E V++++M H+ NGK ++D A+LYR N Q+R
Sbjct 302 RKPKGLWTANTNGEKIHYYEAMTERDEAEFVIREIMKHQ-RNGKKYQDMAILYRTNAQSR 360
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
VLE + +PY + GGQ F+ R EIKD++SYLR+I N DD + RIIN PKR +GP
Sbjct 361 VLEETFMKSNMPYTMVGGQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPS 420
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR--ELLDDDEPV 481
++EK+ ++ +N++S+ A + + + KK + F + I + + E L+ E V
Sbjct 421 SVEKVQNYALQNNISMFDALGEADF-IGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIV 479
Query 482 PKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIR 541
+V Q ++GY + + + + +++L+NI+ F S+ ++E +S+I
Sbjct 480 DEVLQ---KSGYREMLERE--NTLESRSRLENIDE-FMSVPKDYEENTPLEE---QSLIN 530
Query 542 KLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAAD---TI 598
L L ++ E + + V L+T+H+AKGLEFP V+IMG+EE L PH +I ++ +
Sbjct 531 FLTDLSLVADIDEADTENGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEM 590
Query 599 EEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
+EERR+ YV ITRA + L +T A R G+ + PSRFL E+P+ LE
Sbjct 591 QEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPESLLE 640
>O34580 ATP-dependent DNA helicase PcrA [Bacillus subtilis (strain
168)]
Length=739
Score = 441 bits (1135), Expect = 1e-148
Identities = 267/671 (40%), Positives = 389/671 (58%), Gaps = 19/671 (3%)
Query 5 SHLNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAA 64
S LN QQEA+K T GPLL++AGAGSGKT V+T +IAYL+ + + I A+TFTNKAA
Sbjct 10 SGLNPVQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query 65 REMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDL 124
REMKERV +L A + +STFH+ + +LR ++ + NFSILD+ D ++ +
Sbjct 70 REMKERVESILG-PGADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGI 128
Query 125 MQRDNLSGAESKELIAKA-MKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
++ NL + K+ ++ + IS KN+L PE+ D + +Y Y++ L
Sbjct 129 LKERNL---DPKKFDPRSILGTISSAKNELTEPEEFSKVAGGYYDQVVSDVYADYQKKLL 185
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
++DFDDLI+ +L EV + +Q + +Y+ VDEYQDTN AQY+LVK L
Sbjct 186 KNQSLDFDDLIMTTIKLFDRVPEVLEFYQRKFQYIHVDEYQDTNRAQYMLVKQLAERFQN 245
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGD DQSIY WRGA N+ ++D+PN VI LEQNYRST RIL+AAN VI+NN +
Sbjct 246 LCVVGDSDQSIYRWRGADITNILSFEKDYPNASVILLEQNYRSTKRILRAANEVIKNNSN 305
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW++ G I N+ E + V + + D A+LYR N Q+R
Sbjct 306 RKPKNLWTENDEGIKISYYRGDNEFGEGQFVAGKIHQLHSTGKRKLSDIAILYRTNAQSR 365
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
V+E L + + Y + GG F+ R EIKD+++YLRL+ NP+DD +F RI+N PKR +G
Sbjct 366 VIEETLLKAGLNYNIVGGTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGAT 425
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMV-IPKKAASQLHEFADFITTFTRELLDDDEPVP 482
+LEK+ ++ N LS A Q++ + + KAA+ L F I T + D
Sbjct 426 SLEKIASYAAINGLSFFQAI--QQVDFIGVSAKAANALDSFRQMIENLT-NMQDYLSITE 482
Query 483 KVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRK 542
+++++ Y + ++ + + AQ ++L+NI+ S +N ++ED K + + +
Sbjct 483 LTEEILDKTEYREMLKAEKSIEAQ--SRLENIDEFLSVTKNFEQKSED---KTLVAFLTD 537
Query 543 LVL---LDMLEQQQEEE-DTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSIAADT- 597
L L +D L+Q++EE D + L+TLHAAKGLEFP V++MGLEE + PH S+ +
Sbjct 538 LALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAE 597
Query 598 IEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEWLGRKKKLA 657
+EEERRL YVGITRA Q L LT A+ R G+ SRF+ E+P D LE L KK+
Sbjct 598 MEEERRLAYVGITRAEQELYLTNAKMRTLFGRTNMNPESRFIAEIPDDLLENLNEKKETR 657
Query 658 GNVDPKEQAQQ 668
K Q ++
Sbjct 658 ATSARKMQPRR 668
>P03018 DNA helicase II [Escherichia coli (strain K12)]
Length=720
Score = 418 bits (1074), Expect = 9e-140
Identities = 261/645 (40%), Positives = 366/645 (57%), Gaps = 15/645 (2%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LNDKQ+EA+ + LLVLAGAGSGKT V+ +IA+L+ + I A+TFTNKAA E
Sbjct 10 LNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAE 69
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
M+ R+ +L+ G+ V TFH LLR L +F ILDS+D R+L L++
Sbjct 70 MRHRIGQLMGTSQG-GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIK 128
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
NL E + +AM I+ K++ + P S VE + +YQ Y+
Sbjct 129 AMNLD--EKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQT-WQKVYQAYQEACDRAG 185
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
VDF +L++ L + ++ R +LVDE+QDTN QY ++LL G G+
Sbjct 186 LVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY WRGA+ EN+ DFP + I+LEQNYRSTS IL AANA+IENN
Sbjct 246 VGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLG 305
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
KKLW+D GE I + N+ DE+ VV + T + NG + A+LYR N Q+RVLE
Sbjct 306 KKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQ-DNGGALAECAILYRSNAQSRVLE 364
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L Q +PY++ GG FF R EIKD +SYLRLI N DD+AF R++NTP R IG TL+
Sbjct 365 EALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLD 424
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
+ S++ L+L A + + +AAS L F + I +E D V R
Sbjct 425 VVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRV 484
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
+ + Y +E+ + +T+++N+E L ++ + ED D +++ +
Sbjct 485 IKDSGLRTMYEQEKG---EKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAA-- 539
Query 547 DMLEQQQEEEDT--DKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSI-AADTIEEERR 603
LE + + DT D V L+TLH+AKGLEFP V+I+G+EE + P + S+ +EEERR
Sbjct 540 --LEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERR 597
Query 604 LMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
L YVG+TRA Q LTLT AE R+ G+ PSRF+ ELP++ +E
Sbjct 598 LAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVE 642
>Q05311 DNA helicase II [Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720)]
Length=720
Score = 414 bits (1063), Expect = 4e-138
Identities = 260/645 (40%), Positives = 364/645 (56%), Gaps = 15/645 (2%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LNDKQ+EA+ + +LVLAGAGSGKT V+ +IA+L+ + I A+TFTNKAA E
Sbjct 10 LNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAE 69
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
M+ R+ +L+ G+ V TFH LLR L +F ILDS+D R+L L++
Sbjct 70 MRHRIGQLMGTSQG-GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIK 128
Query 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRAYN 186
NL E + +AM I+ K++ + P S VE + +YQ Y+
Sbjct 129 AMNLD--EKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQT-WQKVYQAYQEACDRAG 185
Query 187 AVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQFTA 246
VDF +L++ L + ++ R +LVDE+QDTN QY V+LL G G+
Sbjct 186 LVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDTGKVMI 245
Query 247 VGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHIFD 306
VGDDDQSIY WRGA+ EN+ DFP + I+LEQNYRSTS IL AANA+IENN
Sbjct 246 VGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENNNGRLG 305
Query 307 KKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARVLE 366
KKLW+D GE I + N+ DE+ VV + T + NG A+LYR N Q+RVLE
Sbjct 306 KKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQ-DNGGALAQCAILYRSNAQSRVLE 364
Query 367 TQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPVTLE 426
L Q +PY++ GG FF R EIKD +SYLRLI N DD+AF R++NTP R IG TL+
Sbjct 365 EALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLD 424
Query 427 KLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPKVRQ 486
+ S++ L+L + + +AAS L F + I +E D V R
Sbjct 425 VVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRV 484
Query 487 MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKLVLL 546
+ + Y +E+ + +T+++N+E L ++ + ED D +++ +
Sbjct 485 IKDSGLRTMYEQEKG---EKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAA-- 539
Query 547 DMLEQQQEEEDT--DKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSI-AADTIEEERR 603
LE + + DT D V L+TLH+AKGLEFP V+I+G+EE + P + S+ +EEERR
Sbjct 540 --LEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERR 597
Query 604 LMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELE 648
L YVG+TRA Q LTLT AE R+ G+ PSRF+ ELP++ +E
Sbjct 598 LAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVE 642
>P9WMQ1 ATP-dependent DNA helicase UvrD1 [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=771
Score = 394 bits (1012), Expect = 6e-130
Identities = 263/669 (39%), Positives = 383/669 (57%), Gaps = 35/669 (5%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LN +Q++A+ + PLL++AGAGSGKT+V+T++IAYL+ + +I A+TFTNKAA E
Sbjct 23 LNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAE 82
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTP-LKNNFSILDSDDCKRILMDLM 125
M+ERV L+ E A+ + VSTFH+ + +LR + L +NFSI D+DD +R+L ++
Sbjct 83 MRERVVGLVG-EKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQ-MV 140
Query 126 QRDNLSGAESKELIAKAMKK-ISDWKNDLIVPEQAHS-TCETVEDVQ--FAHLYQLYERN 181
RD G + K + + IS+ KN+LI P QA + E +D+ A +Y Y+R
Sbjct 141 GRD--LGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRR 198
Query 182 LRAYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVG-- 239
LRA NA+DFDDLI +LQ ++ ++ R R++LVDEYQDTN AQY+LV+ LVG
Sbjct 199 LRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRD 258
Query 240 -----VMGQFTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAA 294
G+ VGD DQSIYA+RGA N+ + D+P+ + I LEQNYRST IL AA
Sbjct 259 SNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAA 318
Query 295 NAVIENNPHIFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAV 354
N+VI N +K+LW+D G GE+I N+ DE+ V +++ + + D AV
Sbjct 319 NSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAV 378
Query 355 LYRGNFQARVLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIIN 414
YR N +R LE L + IPYK+ GG F+ R EI+D+++YLR++ NP D + RI+N
Sbjct 379 FYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILN 438
Query 415 TPKRAIGPVTLEKLGLFSQENHLSL---LAAAADQRLSMVIPKKAASQLHEFADFITTFT 471
TP+R IG + ++++ + L AAA ++ M + +A + F +
Sbjct 439 TPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPM-LNTRAEKAIAGFVEMFDELR 497
Query 472 RELLDDDEPVPKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDV 531
L DD+ V ++ GY + +A+T QE +LDN+ L S E+
Sbjct 498 GRL--DDDLGELVEAVLERTGYRREL--EASTDPQELARLDNLNELVSVAHEFSTDRENA 553
Query 532 DE--KNIESVIRKLVLLDMLEQQQEEEDTDK--------VNLLTLHAAKGLEFPFVYIMG 581
+ E V VL D LE+ D D+ V L+TLH AKGLEFP V++ G
Sbjct 554 AALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTG 613
Query 582 LEEELLPHKNSIAADT-IEEERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLD 640
E+ + PH ++ T + EERRL YVGITRARQ L ++ A R + GQ SRFL
Sbjct 614 WEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLR 673
Query 641 ELPQDELEW 649
E+PQ+ ++W
Sbjct 674 EIPQELIDW 682
>Q02322 DNA helicase II [Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd)]
Length=727
Score = 374 bits (959), Expect = 1e-122
Identities = 237/646 (37%), Positives = 366/646 (57%), Gaps = 20/646 (3%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LNDKQ+E + G LVLAGAGSGKT V+T +IA+L+ I I A+TFTNKAA E
Sbjct 11 LNDKQRERVAAPLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVTFTNKAAAE 70
Query 67 MKERVAKLLSREDAK---GLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMD 123
M+ R+ L++ G+ + TFH+ LLR L +F ILDS+D R++
Sbjct 71 MRHRIQSTLAKHAQHQLFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQLRLIKR 130
Query 124 LMQRDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLR 183
L++ N E +A I++ K++ + P + E ++ +YQ+Y+
Sbjct 131 LLKLHNFD--EKAFPPKQACWYINNKKDEGLRPNDIEDFNDRQER-EWIKIYQIYQDTCD 187
Query 184 AYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQ 243
VDF +L++ L ++ + ++Q R +++LVDE+QDTN QY +K+L G GQ
Sbjct 188 RAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVDEFQDTNKIQYKWIKILAGKTGQ 247
Query 244 FTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPH 303
VGDDDQSIY WRGA+ EN+ +DF + I+LEQNYRST+ IL +AN +I NN
Sbjct 248 VMIVGDDDQSIYGWRGAQIENIQKFLKDF-KAETIRLEQNYRSTANILNSANELIANNSD 306
Query 304 IFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQAR 363
K LW++ G+ + I + N+ DE++ V + GK D AVLYR N Q+R
Sbjct 307 RLGKNLWTEGEKGDPVGIYSAFNELDEAKFVASQIQDWVEHGGK-LDDCAVLYRSNSQSR 365
Query 364 VLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIINTPKRAIGPV 423
V+E L + QIPY++ GG FF R EIKD ++YLRLI N +DD+AF R+INTP R IG
Sbjct 366 VIEEALIRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQDDAAFERVINTPTRGIGDR 425
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPK 483
TL+ L ++E ++L A ++ +A++ L F + I + L D +P
Sbjct 426 TLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQELINS----LQLDTAEMPL 481
Query 484 VRQ---MMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVI 540
Q ++ +G + +++ + +++N+E L ++ + + + ++ +E +
Sbjct 482 FAQTDFVIKHSGLYEMYQQEKGEKGE--VRIENLEELVTATREFI-KPDNAEEMTELTAF 538
Query 541 RKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNSI-AADTIE 599
L+ E+Q + V ++TLH+AKGLEFP V+++G+EE L P S +E
Sbjct 539 LTHASLEAGEEQASPHQS-CVEMMTLHSAKGLEFPRVFMVGVEEGLFPSFRSFEEPGRLE 597
Query 600 EERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQD 645
EERRL YVGITRA++ LT++ AE R+ + ++ PSRF+ ELP++
Sbjct 598 EERRLAYVGITRAKKKLTISYAESRRLYAKEERHLPSRFIAELPRE 643
>P45612 Probable DNA helicase II homolog [Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 / NCTC
10154)]
Length=722
Score = 367 bits (942), Expect = 3e-120
Identities = 227/650 (35%), Positives = 367/650 (56%), Gaps = 22/650 (3%)
Query 7 LNDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAARE 66
LND+Q A+ P+ ++AGAGSGKT VIT KIAYL+++ I RI A+TFTNKAA+E
Sbjct 10 LNDQQLAAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKE 69
Query 67 MKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDDCKRILMDLMQ 126
MKERV ++ + K +STFH++ +LR++ KH L++ F I+DSDD KRI+ ++
Sbjct 70 MKERVLQI-TNNSFKSPFISTFHSWCSKVLRIDGKHIGLEDKFLIIDSDDQKRIIKSALK 128
Query 127 RDN--LSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQFAHLYQLYERNLRA 184
N LS + K K + KI +WK +L+ P +A + + FA +Y+LY+ L
Sbjct 129 ESNIELSENDKKTFDKKILYKIKEWKEELVDPSEAILNATSTLEKNFAVIYRLYQNTLLK 188
Query 185 YNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLVGVMGQF 244
N++DFDDL + RL ++N E+ +KW+N Y+LVDE+QDTN Q+ L+K L
Sbjct 189 NNSLDFDDLQIYVYRLFKQNNEILNKWRNAYDYVLVDEFQDTNELQFSLIKFLTINTNHL 248
Query 245 TAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYRSTSRILKAANAVIENNPHI 304
T VGD DQ+IY+WRGAK + + + + N I L QNYRST +IL +N+ I+NN
Sbjct 249 TVVGDPDQTIYSWRGAKLDIILNFNKTYSNAISIVLNQNYRSTKQILDISNSFIKNNKFR 308
Query 305 FDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMNGKNWKDYAVLYRGNFQARV 364
K+++++ G+ + + C + E+ V + + G ++KD +LYR N ++
Sbjct 309 EHKEIFTNNKSGKKVVLKECNSKTSEAS-YVSSKIKELVKQGYHYKDIFILYRMNAWSQE 367
Query 365 LETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRIIN-TPKRAIGPV 423
E +L +IP++L GG F R IKD M++L++ I+ +D+ + R++ PK IG +
Sbjct 368 FEKELANKKIPFQLIGGIKFRERKVIKDAMAFLKM-ISIKDNLSSQRVLGLIPK--IGNI 424
Query 424 TLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTRELLDDDEPVPK 483
T+EK+ + NHL++ ++ +++ L E + T + LD+
Sbjct 425 TIEKIINTANLNHLNIFDLITNEDKTLL--HSITKNLDELIEVFKTAHQLYLDNTNIEEI 482
Query 484 VRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVDEKNIESVIRKL 543
++ ++ ++GY E +E+ L+NI +L+ ++ ED D K + +
Sbjct 483 LKYLLIQSGY-----ENKLKIRKEQDDLENINALYDQLKRF---DEDFDPKYYSEENKLI 534
Query 544 VLLD---MLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHK-NSIAADTIE 599
L + E E DKV+LLT+HAAKGLE V+I GL + + P + + + + +E
Sbjct 535 AFLQEEALTSDIDEAEQIDKVSLLTVHAAKGLENKVVFITGLNQGIFPSRISETSINELE 594
Query 600 EERRLMYVGITRARQGLTLTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649
EERR +YV +TRA+ L LT + + ++ PS+F+ EL +D E+
Sbjct 595 EERRALYVALTRAKDELFLTYVKGDYSHIMQSELKPSKFIHELDKDLYEF 644
>Q10213 ATP-dependent DNA helicase srs2 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=887
Score = 274 bits (700), Expect = 1e-83
Identities = 206/649 (32%), Positives = 333/649 (51%), Gaps = 53/649 (8%)
Query 7 LNDKQ----QEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNK 62
LN++Q Q KYTQ +LAG GSGKT V+T ++AYL+++ I A + TFTNK
Sbjct 11 LNEEQRISVQSPHKYTQ----ILAGPGSGKTRVLTARVAYLLQKNHIAAEDLIIATFTNK 66
Query 63 AAREMKERVAKLLSREDAKGLSVSTFHTFGLNLLRLELKHTPLKNNFSILDSDD----CK 118
AA E+K R+ +L +A L TFH+ L KH L +N+ I D +D K
Sbjct 67 AANEIKLRIEAILGNSEASKLISGTFHSIAYKYLVKYGKHIGLSSNWLIADRNDTQAIMK 126
Query 119 RILMDLMQRDN--LSGAESKELIAK-AMKKISDWKND--LIVPEQAHSTC--------ET 165
R+L L + N SG +EL + A+ +I+ K++ L+ P + +
Sbjct 127 RLLDSLKKAKNPIASGIRGQELTPQNALNRITKLKSNGLLVKPGMDQLSLINGLEEPPKE 186
Query 166 VEDVQFAHLYQLYERNLRAYNAVDFDDLIVLPTRLLQENAEVRDKWQNRTRYLLVDEYQD 225
++ Q LY+LY+ +L N DFDDL++ LLQ+ + +++L+DE+QD
Sbjct 187 LQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDC----VRNIKHILIDEFQD 242
Query 226 TNTAQYILVKLLVGVMGQFTAVGDDDQSIYAWRGAKPENMALLKEDFPNLKVIKLEQNYR 285
T+ QY LVKLL T VGD DQSIY +R A+ N+ + EDF +V+ LE+NYR
Sbjct 243 TSKIQYFLVKLLALQNSDITIVGDPDQSIYGFRSAEIRNLNQMSEDFEGTQVLHLERNYR 302
Query 286 STSRILKAANAVIENNPHIFDKKLWSDKGHGEVIRIITCRNDDDESERVVKDLMTHKLMN 345
S IL+ A ++I + K L S+ ++ ES + +++ K +
Sbjct 303 SAKPILELALSIISQDKSRPKKGLKSNHISSLKPHYRLFETNNKESYWIAREI---KRIV 359
Query 346 GK-----NWKDYAVLYRGNFQARVLETQLRQMQIPYKLSGGQSFFARAEIKDVMSYLRLI 400
G + D A+L R + R LE L ++ +PY++ G FF R EI+D+++YLR++
Sbjct 360 GSCPELIFYNDIAILVRSSSLTRSLEHALSELGVPYRMVGVNKFFDREEIRDLIAYLRVL 419
Query 401 INPEDDSAFLRIINTPKRAIGPVTLEKLGLFSQENHLSLLAAAADQR-----LSMVIPKK 455
N +D ++ +R+IN P R IG ++++ S+ L+ + + LS K
Sbjct 420 AN-KDSTSLIRVINVPPRNIGKTKIDRIIFESERRGLTFWQTLNEVKNENILLSQRNDKS 478
Query 456 AASQLHEFADFITTFTRELLDDDEPV---PKVRQMMNEAGYIDYIREQAATPAQEKTKLD 512
L F I+ L + + +++E Y +Y+ + +E K +
Sbjct 479 FLKSLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEE--KWE 536
Query 513 NIESLFSSIQNLLNRTEDVDEKNIESVIRK--LVLLDMLEQQQEEEDTDKVNLLTLHAAK 570
N+ L N+ ++D K V+ + L + ++ ++Q+E ++ KV + TLHAAK
Sbjct 537 NVMELVQQSDNISCIFYELDYKISTIVLLQNFLTQIALVNEEQKEGESQKVTISTLHAAK 596
Query 571 GLEFPFVYIMGLEEELLPHKNSIAADTIEEERRLMYVGITRARQGLTLT 619
GLE+P V++ L E ++PH S D ++EERRL+YVG TRA+ L L+
Sbjct 597 GLEWPVVFLPCLCENIIPHSRS---DDLDEERRLLYVGATRAQALLYLS 642
Lambda K H a alpha
0.318 0.134 0.375 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 8585760
Database: 5862004722088e43ae64b287e4bcc552.SwissProt.fasta
Posted date: May 30, 2024 6:16 PM
Number of letters in database: 15,108
Number of sequences in database: 21
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
