BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 3c4c83f7fa86c8f937d5640092d6df91.SwissProt.fasta
2 sequences; 827 total letters
Query= ACIAD0907
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
O07577 Uncharacterized sodium-dependent transporter YhdH [Bacillu... 35.8 2e-06
O99256 Cytochrome b [Plasmodium chabaudi] 35.0 4e-06
>O07577 Uncharacterized sodium-dependent transporter YhdH [Bacillus
subtilis (strain 168)]
Length=451
Score = 35.8 bits (81), Expect = 2e-06
Identities = 32/126 (25%), Positives = 59/126 (47%), Gaps = 18/126 (14%)
Query 41 FWLLWLGSMVVLALPICYLEIALARRSKTTALNALSHLTRDADASARWRLVGWMAV---- 96
F+L+++ ++L P+ E RR++T A++A ++A SA W L GW+ V
Sbjct 44 FFLIFVLFTILLGYPLLVGEFIFGRRNQTNAIDAYK---KEAPRSA-WFLTGWIGVAACF 99
Query 97 ---TFIAFLAGGILSHLSLL-------LPQFTQFNVIPSFILAGLAVLAFALSFVSRQIL 146
+F + + G IL ++ L Q + S I + LA L F++ +L
Sbjct 100 LVLSFYSVIGGWILLYIVKTASGSLSGLSQAQYGALFASIIQNPVQTLAAQLVFMALTVL 159
Query 147 LLMTGI 152
++ G+
Sbjct 160 VVARGV 165
Score = 33.1 bits (74), Expect = 2e-05
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (2%)
Query 296 VLLMLWGLLLCLIYAIFAGWIMKISHLRKSMNFSNELFYNLWRIAVRIVLPLAIIVAMIS 355
VL+ LL+ L + ++ +R N FY W +R ++PLAII+ ++
Sbjct 386 VLMPSGALLISLFIPLKISKSELLAEMRNGSNAGKAFFYT-WFYLLRFIVPLAIIIVFLN 444
Query 356 VIGQL 360
+IG L
Sbjct 445 LIGIL 449
Score = 20.0 bits (40), Expect = 0.22
Identities = 12/37 (32%), Positives = 17/37 (46%), Gaps = 8/37 (22%)
Query 166 TETTPWHWTS-IEFKEWGNATVLALVASGLGMGLYWQ 201
+E P W S I F V+A S +G+G W+
Sbjct 2 SEQKPVQWASKIGF-------VMAAAGSAIGLGAIWK 31
Score = 18.5 bits (36), Expect = 0.66
Identities = 5/14 (36%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 304 LLCLIYAIFAGWIM 317
L+ Y++ GWI+
Sbjct 100 LVLSFYSVIGGWIL 113
Score = 17.7 bits (34), Expect = 1.2
Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 127 ILAGLAVLAFALSF 140
+LAGLA+ SF
Sbjct 264 LLAGLAIFPAVFSF 277
>O99256 Cytochrome b [Plasmodium chabaudi]
Length=376
Score = 35.0 bits (79), Expect = 4e-06
Identities = 35/164 (21%), Positives = 72/164 (44%), Gaps = 26/164 (16%)
Query 175 SIEFKEWGNATVLALVASGLGMGLYWQTSLQHASQSQHASSTVLPIWFAQLLAVVAF-GF 233
S++ K + N +L L+ S G+ L H + ++ V P+ Q++ F F
Sbjct 216 SLDVKGFNNILILFLIQSIFGV-----IPLSHPDNAIIVNTYVTPL---QIVPEWYFLPF 267
Query 234 MSIQHALPMWTWAVAAIMASALLIQLAKEQ------------LAQRQIALPIQWMILIVA 281
++ +P + ++AS L+ L EQ + R+ ++PI W +
Sbjct 268 YAMLKTIPSKNAGLVIVVASLQLLFLLAEQRNLTTIIQFKMVFSAREYSVPIIWFMCSFY 327
Query 282 VLIWMIPNLQQQFFVLLMLWGLLLCLIYAIFAGWIMKISHLRKS 325
L+W+ L Q F+ L+G L +++ F+ + + H +++
Sbjct 328 ALLWIGCQLPQDIFI---LYGRLFIILF--FSSGLFALVHYKRT 366
Score = 20.4 bits (41), Expect = 0.16
Identities = 17/82 (21%), Positives = 35/82 (43%), Gaps = 12/82 (15%)
Query 229 VAFGFMSIQHAL-PMWT-W------AVAAIMASALLIQLAKEQLAQRQIALPIQWMILIV 280
+++ + SIQH L +W+ W A A + L L + LP+ W+ ++
Sbjct 54 ISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRGLNYSYLYLPLSWISGLI 113
Query 281 AVLIWMIPNLQQQFFVLLMLWG 302
++++ F ++ WG
Sbjct 114 IFALFIV----TAFIGYVLPWG 131
Score = 20.4 bits (41), Expect = 0.16
Identities = 21/76 (28%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query 127 ILAGL--AVLAFALSFVSRQILLLMTGIGVILSLILAQVSGTETTPWHWTSIEFKEWGNA 184
IL GL + L LS++S I+ + + + +L PW S WG A
Sbjct 93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVL---------PWGQMSY----WG-A 138
Query 185 TVLALVASGLGMGLYW 200
TV+ + SG+ + W
Sbjct 139 TVITNLLSGIPALVIW 154
Score = 16.2 bits (30), Expect = 3.5
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (4%)
Query 114 LPQFTQFNVIPSFILAGLAVLAFALSFV 141
LP + IPS AGL ++ +L +
Sbjct 265 LPFYAMLKTIPS-KNAGLVIVVASLQLL 291
Lambda K H a alpha
0.332 0.139 0.446 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 248296
Database: 3c4c83f7fa86c8f937d5640092d6df91.SwissProt.fasta
Posted date: May 9, 2024 11:17 AM
Number of letters in database: 827
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
