BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e0c8bee9fd0bb9137d525b1ad882addc.SwissProt.fasta
12 sequences; 5,200 total letters
Query= ACIAD0911
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
G3XCX3 Type IV pilus ATPase PilU [Pseudomonas aeruginosa (strain ... 475 1e-171
P24559 Type IV pilus retractation ATPase PilT [Pseudomonas aerugi... 241 2e-80
Q06581 Twitching motility protein [Neisseria gonorrhoeae] 220 6e-72
P52052 Uncharacterized protein YggR [Escherichia coli (strain K12)] 213 1e-69
P25953 Competence protein ComGA [Bacillus subtilis (strain 168)] 101 2e-27
Q9K919 Competence protein ComGA [Halalkalibacterium halodurans (s... 98.6 2e-26
P31741 Type II secretion system protein E [Aeromonas hydrophila] 94.4 2e-24
P31703 Type II secretion system protein E [Pectobacterium carotov... 92.8 7e-24
P45759 Putative type II secretion system protein E [Escherichia c... 92.0 1e-23
Q6FF45 Type IV pilus assembly ATPase PilB [Acinetobacter baylyi (... 92.0 1e-23
P15645 Type II secretion system protein E [Klebsiella pneumoniae] 91.3 2e-23
Q00512 Type II secretion system protein E [Pseudomonas aeruginosa... 91.3 2e-23
>G3XCX3 Type IV pilus ATPase PilU [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=382
Score = 475 bits (1222), Expect = 1e-171
Identities = 233/357 (65%), Positives = 292/357 (82%), Gaps = 1/357 (0%)
Query 1 MDFNDLLNLMAKHKASDLFITAGVEPSLKINGEITPVSKTKLDGDMIAQLIDSITTQKQR 60
M+F LL LM + SDLFITAGV PS+K+NG + PV+KT L + + + + ++QR
Sbjct 1 MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQR 60
Query 61 QEFIETHECNFAILNREKNERFRVSAFQQRDMPGMVIRRIETKIPSPDDLHLPPILKELA 120
++F E HECNFAI R RFRVSAF QR++ GMV+RRIET IP+ ++L LP ILK+LA
Sbjct 61 RDFAENHECNFAISARGIG-RFRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLA 119
Query 121 MSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVG 180
++KRG++IF GATGTGKSTSLA+MI +RN++S GHII+IEDPIE+IH+H GCI+TQREVG
Sbjct 120 LTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIEDPIEYIHQHQGCIVTQREVG 179
Query 181 IDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLER 240
+DTDSFE+ALKNTLRQAPDVI+IGE+RSRE MD+A+AFAETGHL ATLHANNANQ LER
Sbjct 180 LDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALER 239
Query 241 IIHFFDADRHQQIFMDLSLNLKAVISQQLIPTHDGQSRRAAVEVLINTPLLSDYIRQGEI 300
IIHFF ADRH Q++MDLSLNLKA+++QQL+PT DG+ RRA +EVL+NTPL +D IR+GE+
Sbjct 240 IIHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEV 299
Query 301 YKIKELMARSGELGMQTFDQALFDLYDHQHISYADALKHADSPNNLRLQIKLSEEAN 357
+++K LM RS E GMQTFDQAL+ LY I+Y DAL HADS N+LRL IKL E++
Sbjct 300 HELKPLMKRSTEQGMQTFDQALYQLYTQGEITYEDALAHADSANDLRLMIKLGSESD 356
>P24559 Type IV pilus retractation ATPase PilT [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=344
Score = 241 bits (615), Expect = 2e-80
Identities = 136/345 (39%), Positives = 207/345 (60%), Gaps = 2/345 (1%)
Query 1 MDFNDLLNLMAKHKASDLFITAGVEPSLKINGEITPVSKTKLDGDMIAQLIDSITTQKQR 60
MD +LL AK ASDL ++AG+ P ++++G++ ++ L+ + LI I KQR
Sbjct 1 MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQR 60
Query 61 QEFIETHECNFAILNREKNERFRVSAFQQRDMPGMVIRRIETKIPSPDDLHLPPILKELA 120
++F E E +F+ RFRV+AF Q G V R I +K+ + ++L + + K ++
Sbjct 61 KDFEEFLETDFSF-EVPGVARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVS 119
Query 121 MSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVG 180
RG+++ +G TG+GKST+LA+M+ + N HI+TIEDPIEF+HE C++ QREV
Sbjct 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVH 179
Query 181 IDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLER 240
DT F AL++ LR+ PD+IL+GE+R E + AL AETGHLVF TLH +A +T++R
Sbjct 180 RDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDR 239
Query 241 IIHFFDADRHQQIFMDLSLNLKAVISQQLIPTHDGQSRRAAVEVLINTPLLSDYIRQGEI 300
++ F A+ + LS +L++VISQ LI G R AA E++I TP + + IR+ ++
Sbjct 240 VVDVFPAEEKAMVRSMLSESLQSVISQTLIKKIGG-GRVAAHEIMIGTPAIRNLIREDKV 298
Query 301 YKIKELMARSGELGMQTFDQALFDLYDHQHISYADALKHADSPNN 345
++ + G LGMQT D L L IS +A + A P N
Sbjct 299 AQMYSAIQTGGSLGMQTLDMCLKGLVAKGLISRENAREKAKIPEN 343
>Q06581 Twitching motility protein [Neisseria gonorrhoeae]
Length=374
Score = 220 bits (561), Expect = 6e-72
Identities = 121/321 (38%), Positives = 191/321 (60%), Gaps = 1/321 (0%)
Query 26 PSLKINGEITPVSKTKLDGDMIAQLIDSITTQKQRQEFIETHECNFAILNREKNERFRVS 85
P ++++G++ ++ ++ + + ++ S+ QR+ + + E +F+ RFRV+
Sbjct 53 PMIRVHGDMRRINLPEMSAEEVGNMVTSVMNDHQRKIYQQNLEVDFSF-ELPNVARFRVN 111
Query 86 AFQQRDMPGMVIRRIETKIPSPDDLHLPPILKELAMSKRGIIIFSGATGTGKSTSLASMI 145
AF P V R I + + S ++L P I +++A S RG+++ +G TG+GKST+LA+MI
Sbjct 112 AFNTGRGPAAVFRTIPSTVLSLEELKAPSIFQKIAESPRGMVLVTGPTGSGKSTTLAAMI 171
Query 146 QHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGE 205
+ N+ HI+TIEDPIEF+H+ +I QRE+ T SF AL + LR+ PDVIL+GE
Sbjct 172 NYINETQPAHILTIEDPIEFVHQSKKSLINQRELHQHTLSFANALSSALREDPDVILVGE 231
Query 206 IRSREVMDYALAFAETGHLVFATLHANNANQTLERIIHFFDADRHQQIFMDLSLNLKAVI 265
+R E + AL AETGHLVF TLH A +T++RI+ F A + + LS +L AVI
Sbjct 232 MRDPETIGLALTAAETGHLVFGTLHTTGAAKTVDRIVDVFPAGEKEMVRSMLSESLTAVI 291
Query 266 SQQLIPTHDGQSRRAAVEVLINTPLLSDYIRQGEIYKIKELMARSGELGMQTFDQALFDL 325
SQ L+ THDG R A+ E+LI P + + IR+ +I +I ++ GMQT DQ+L L
Sbjct 292 SQNLLKTHDGNGRVASHEILIANPAVRNLIRENKITQINSVLQTGQASGMQTMDQSLQSL 351
Query 326 YDHQHISYADALKHADSPNNL 346
I+ A + A + ++
Sbjct 352 VRQGLIAPEAARRRAQNSESM 372
>P52052 Uncharacterized protein YggR [Escherichia coli (strain
K12)]
Length=326
Score = 213 bits (541), Expect = 1e-69
Identities = 119/329 (36%), Positives = 190/329 (58%), Gaps = 9/329 (3%)
Query 1 MDFNDLLNLMAKHKASDLFITAGVEPSLKINGEITPVSKTKLDGDMIAQLIDSITTQKQR 60
M+ +++ L KH SDL + + +I G + D + +L+ QR
Sbjct 1 MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRM---EAAPFDTPDVEELLREWLDDDQR 57
Query 61 QEFIETHECNFAILNREKNERFRVSAFQQRDMPGMVIRRIETKIPSPDDLHLPPILKELA 120
+E + +FA+ E N+R R SAF QR + +R + + P + L P +L EL
Sbjct 58 AILLENGQLDFAVSLAE-NQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELL 116
Query 121 MSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVG 180
S+ G+I+ +GATG+GKST+LA+M+ + NQH+ HI+T+EDP+E+++ C+I QRE+G
Sbjct 117 KSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIG 176
Query 181 IDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLER 240
+ +F L+ LR+ PDVIL+GE+R E + AL AETGHLV ATLH A Q +ER
Sbjct 177 LHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVER 236
Query 241 IIHFFDADRHQQIFMDLSLNLKAVISQQLIPTHDGQSRRAAVEVLINTPLLSDYIRQGEI 300
++ F A + L+ +L+AV+SQ+L + R A E+LINTP + + IR+G+
Sbjct 237 LVDSFPAQEKDPVRNQLAGSLRAVLSQKL-EVDKQEGRVALFELLINTPAVGNLIREGKT 295
Query 301 YKIKELMARSGELGMQTFDQALFDLYDHQ 329
+++ ++ ++GM TF Q+ Y H+
Sbjct 296 HQLPHVIQTGQQVGMITFQQS----YQHR 320
>P25953 Competence protein ComGA [Bacillus subtilis (strain 168)]
Length=356
Score = 101 bits (252), Expect = 2e-27
Identities = 60/174 (34%), Positives = 95/174 (55%), Gaps = 8/174 (5%)
Query 76 REKNERFRVSAFQQRDMPGMVIRRI-ETKIPSPDDLHLPP----ILKELAMSKRGIIIFS 130
+E N R+S + +VIR + + IPS D L L P L G++IF+
Sbjct 84 KEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFT 143
Query 131 GATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVGIDTDSFEIAL 190
G TG+GK+T+L S++Q+ +H +I+T+EDP+E E + + G+ ++ L
Sbjct 144 GPTGSGKTTTLYSLVQYAKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGV---TYSAGL 200
Query 191 KNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLERIIHF 244
K LR PD+I++GEIR E + A+ A TGHLV +LH +A + R++ F
Sbjct 201 KAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLHTRDAKGAIYRLLEF 254
Score = 17.3 bits (33), Expect = 10.0
Identities = 22/102 (22%), Positives = 39/102 (38%), Gaps = 14/102 (14%)
Query 226 FATLHANNANQTLERIIHFFDAD-----RHQQIFMDLSLNLKAVISQQ-----LIPTHDG 275
+A H N TLE + D D +++ + S LKA++ L D
Sbjct 160 YAKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDA 219
Query 276 QSRRAAVEVLINTPLLSDYIR----QGEIYKIKELMARSGEL 313
++ AV + L+ + +G IY++ E E+
Sbjct 220 ETAEIAVRAAMTGHLVLTSLHTRDAKGAIYRLLEFGINMNEI 261
>Q9K919 Competence protein ComGA [Halalkalibacterium halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /
C-125)]
Length=348
Score = 98.6 bits (244), Expect = 2e-26
Identities = 63/156 (40%), Positives = 90/156 (58%), Gaps = 11/156 (7%)
Query 116 LKELAMSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIIT 175
L L +G+I+ +GATG+GK+T+L +M+Q HI+TIEDPIE ++ T
Sbjct 130 LISLMTRTQGLILLTGATGSGKTTTLYAMLQKALHMQNLHIVTIEDPIEQLNP----AFT 185
Query 176 QREVGIDTD-SFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNA 234
Q E+ ++E+ LK LR PDVI+IGEIR + YA+ A TGHLV AT+H+ NA
Sbjct 186 QFEMNEKAQLTYEVGLKAALRHDPDVIMIGEIRDQTTAVYAVRAALTGHLVLATIHSANA 245
Query 235 NQTLERIIHFFDADRHQQIFMDLSLNLKAVISQQLI 270
T+ R+ A DL + A+I+Q+LI
Sbjct 246 RGTITRLCEMGVA------LHDLREVVVAIIAQELI 275
>P31741 Type II secretion system protein E [Aeromonas hydrophila]
Length=501
Score = 94.4 bits (233), Expect = 2e-24
Identities = 62/159 (39%), Positives = 92/159 (58%), Gaps = 12/159 (8%)
Query 115 ILKELAMSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCII 174
I+ EL GII+ +G TG+GKST+L + + N + +I+T+EDPIE+ E G
Sbjct 246 IISELIRKPHGIILVTGPTGSGKSTTLYAALSEINSRDR-NILTVEDPIEYDLEGVG--- 301
Query 175 TQREVGIDTD-SFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANN 233
Q +V D +F L+ LRQ PDV+++GEIR E A+ + TGHLV +TLH N
Sbjct 302 -QTQVNTKVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 360
Query 234 ANQTLERIIHFFDADRHQQIFMDLSLNLKAVISQQLIPT 272
A + R+ D + F+ LS +L AV++Q+L+ T
Sbjct 361 AIGAITRM-----RDMGIEPFL-LSSSLLAVLAQRLVRT 393
Score = 21.9 bits (45), Expect = 0.37
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query 344 NNLRLQIKLSEEANKPLDNRERMSEMERK 372
NN+RL++K + L NR +SE+ RK
Sbjct 228 NNVRLELK---QLGMTLANRNIISELIRK 253
>P31703 Type II secretion system protein E [Pectobacterium carotovorum
subsp. carotovorum]
Length=498
Score = 92.8 bits (229), Expect = 7e-24
Identities = 63/159 (40%), Positives = 92/159 (58%), Gaps = 12/159 (8%)
Query 115 ILKELAMSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCII 174
+L L GII+ +G TG+GKST+L + + N S+ +I+T+EDPIE+ E G
Sbjct 245 LLDSLIHRPHGIILVTGPTGSGKSTTLYAALSRLNA-SERNIMTVEDPIEYELEGIG--- 300
Query 175 TQREVGIDTD-SFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANN 233
Q +V D +F L+ LRQ PDV+L+GEIR E A+ + TGHLV +TLH N+
Sbjct 301 -QTQVNTKVDMTFARGLRAILRQDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNS 359
Query 234 ANQTLERIIHFFDADRHQQIFMDLSLNLKAVISQQLIPT 272
A L R+ D + F+ LS +L V++Q+L+ T
Sbjct 360 ALGALSRL-----QDMGVEPFL-LSTSLLGVLAQRLVRT 392
>P45759 Putative type II secretion system protein E [Escherichia
coli (strain K12)]
Length=493
Score = 92.0 bits (227), Expect = 1e-23
Identities = 59/156 (38%), Positives = 92/156 (59%), Gaps = 12/156 (8%)
Query 116 LKELAMSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIIT 175
L+ L GII+ +G TG+GKST+L +++ N + +I+T+EDP+E+ E G
Sbjct 234 LENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGR-NILTVEDPVEYELEGIG---- 288
Query 176 QREVGIDTD-SFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNA 234
Q +V D SF L+ LRQ PDV+++GEIR E A+ + TGHLV +TLH N+A
Sbjct 289 QTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLSTLHTNSA 348
Query 235 NQTLERIIHFFDADRHQQIFMDLSLNLKAVISQQLI 270
+ + R+ D + F+ LS +L +I+Q+L+
Sbjct 349 SGAVTRL-----RDMGVESFL-LSSSLAGIIAQRLV 378
Score = 19.2 bits (38), Expect = 2.6
Identities = 7/16 (44%), Positives = 10/16 (63%), Gaps = 0/16 (0%)
Query 227 ATLHANNANQTLERII 242
A +H N Q LER++
Sbjct 441 AAIHENVDEQALERLV 456
>Q6FF45 Type IV pilus assembly ATPase PilB [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=579
Score = 92.0 bits (227), Expect = 1e-23
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 21/213 (10%)
Query 78 KNERFRVSAFQQRDMPGMVIRRIETKIPSP-------DDLHLPPILKELAMSK----RGI 126
K + + F+ +P + +I +I P D L P K L M +G+
Sbjct 273 KMSKSKTIDFRVNSLPTLFGEKIVLRILDPASAMLGIDALGYEPEQKALFMEALNKPQGM 332
Query 127 IIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVGIDTDSF 186
++ +G TG+GK+ SL + + N +I T EDP+E E + +VG+ +F
Sbjct 333 LLITGPTGSGKTVSLYTGLNILNTEH-ANISTAEDPVEINLEGVNQVNVNPKVGL---TF 388
Query 187 EIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLERIIHFFD 246
AL++ LRQ PD+I++GEIR E + A+ A+TGHLV +TLH NNA +TL R+ +
Sbjct 389 AAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVMSTLHTNNAAETLTRLRNMGV 448
Query 247 ADRHQQIFMDLSLNLKAVISQQLIPTHDGQSRR 279
A +++ ++ VI+Q+L Q +R
Sbjct 449 AS------FNIATSVNLVIAQRLARRLCSQCKR 475
>P15645 Type II secretion system protein E [Klebsiella pneumoniae]
Length=497
Score = 91.3 bits (225), Expect = 2e-23
Identities = 70/195 (36%), Positives = 107/195 (55%), Gaps = 18/195 (9%)
Query 83 RVSAFQQRDMPGMVIRRIETKIPSPDDLHL---PPILKE---LAMSKRGIIIFSGATGTG 136
RVS +V+R ++ + D L L P +L++ L GI++ +G TG+G
Sbjct 201 RVSTLPSSYGERVVLRLLDKNSVNLDLLTLGMTPALLRQVDGLIARPHGIVLVTGPTGSG 260
Query 137 KSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCIITQREVGIDTD-SFEIALKNTLR 195
KST+L + + + + +I+TIEDPIE+ E G Q +V D +F L+ LR
Sbjct 261 KSTTLYAALSRLDARER-NIMTIEDPIEYELEGIG----QTQVNAKVDMTFARGLRAILR 315
Query 196 QAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANNANQTLERIIHFFDADRHQQIFM 255
Q PDV+L+GEIR E A+ + TGHLV +TLH N+A + R+ D + F+
Sbjct 316 QDPDVVLVGEIRDGETAQIAVQASLTGHLVLSTLHTNSALGAISRL-----QDMGVEPFL 370
Query 256 DLSLNLKAVISQQLI 270
LS +L AV+SQ+L+
Sbjct 371 -LSTSLLAVMSQRLV 384
>Q00512 Type II secretion system protein E [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=502
Score = 91.3 bits (225), Expect = 2e-23
Identities = 56/157 (36%), Positives = 94/157 (60%), Gaps = 12/157 (8%)
Query 115 ILKELAMSKRGIIIFSGATGTGKSTSLASMIQHRNQHSKGHIITIEDPIEFIHEHAGCII 174
++ E GI++ +G TG+GK+T+L + + N ++ +I+T+EDPIE+ E G
Sbjct 247 LMDETVRKPHGILLVTGPTGSGKTTTLYASLTTLNDRTR-NILTVEDPIEYHLEGIG--- 302
Query 175 TQREVGIDTD-SFEIALKNTLRQAPDVILIGEIRSREVMDYALAFAETGHLVFATLHANN 233
Q +V D +F L+ LRQ PDV+++GEIR RE + A+ + TGHLV +TLH N+
Sbjct 303 -QTQVNAKVDMTFARGLRAILRQDPDVVMVGEIRDRETAEIAVQASLTGHLVLSTLHTNS 361
Query 234 ANQTLERIIHFFDADRHQQIFMDLSLNLKAVISQQLI 270
A + R++ D + F+ LS ++ V++Q+L+
Sbjct 362 AIGAITRLV-----DMGIEPFL-LSSSMLGVLAQRLV 392
Score = 18.9 bits (37), Expect = 3.4
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 0/16 (0%)
Query 313 LGMQTFDQALFDLYDH 328
LG F+QAL Y H
Sbjct 67 LGEDAFNQALAASYQH 82
Lambda K H a alpha
0.322 0.136 0.384 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1553664
Database: e0c8bee9fd0bb9137d525b1ad882addc.SwissProt.fasta
Posted date: May 31, 2024 5:08 PM
Number of letters in database: 5,200
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
