BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2f55935bd36da4907fdb7f30d733ba8f.SwissProt.fasta
22 sequences; 4,696 total letters
Query= ACIAD0935
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
P45215 Probable RNA polymerase sigma factor HI_1459 [Haemophilus ... 168 2e-56
Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis (s... 56.2 2e-13
P44790 ECF RNA polymerase sigma-E factor [Haemophilus influenzae ... 55.8 3e-13
P9WGG5 ECF RNA polymerase sigma factor SigG [Mycobacterium tuberc... 54.7 2e-12
P9WGG4 ECF RNA polymerase sigma factor SigG [Mycobacterium tuberc... 54.7 2e-12
P0AGB7 ECF RNA polymerase sigma-E factor [Escherichia coli O6:H1 ... 50.8 2e-11
P0AGB8 ECF RNA polymerase sigma-E factor [Escherichia coli O157:H7] 50.8 2e-11
P0AGB9 ECF RNA polymerase sigma-E factor [Shigella flexneri] 50.8 2e-11
P0AGB6 ECF RNA polymerase sigma-E factor [Escherichia coli (strai... 50.8 2e-11
P0A2F1 ECF RNA polymerase sigma-E factor [Salmonella typhi] 49.7 5e-11
P0A2F0 ECF RNA polymerase sigma-E factor [Salmonella typhimurium ... 49.7 5e-11
D0ZSY9 ECF RNA polymerase sigma-E factor [Salmonella typhimurium ... 49.7 5e-11
A0QTP2 ECF RNA polymerase sigma factor SigH [Mycolicibacterium sm... 43.5 9e-09
P9WGH9 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberc... 38.9 3e-07
P9WGH8 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberc... 38.9 3e-07
P66808 ECF RNA polymerase sigma factor SigH [Mycobacterium bovis ... 38.9 3e-07
P9WGG8 ECF RNA polymerase sigma factor SigD [Mycobacterium tuberc... 38.5 4e-07
P66812 ECF RNA polymerase sigma factor SigD [Mycobacterium bovis ... 38.5 4e-07
P9WGG9 ECF RNA polymerase sigma factor SigD [Mycobacterium tuberc... 38.5 4e-07
P37978 RNA polymerase sigma factor CnrH [Cupriavidus metalliduran... 37.7 7e-07
P94370 RNA polymerase sigma factor SigY [Bacillus subtilis (strai... 37.4 9e-07
B3Q6P8 ECF RNA polymerase sigma factor EcfG [Rhodopseudomonas pal... 37.0 1e-06
>P45215 Probable RNA polymerase sigma factor HI_1459 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=194
Score = 168 bits (426), Expect = 2e-56
Identities = 90/197 (46%), Positives = 125/197 (63%), Gaps = 4/197 (2%)
Query 1 MSSASAHHKKDLLDQVNNPVFLQDLRQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDS 60
MS S K + V + + LQ +R QM+ FA LQ+ AED+VQ+A SAF++L +
Sbjct 1 MSFISYISFKGIKMNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLAN 60
Query 61 FTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEA 120
F ++AFKTW+FAILKNKIID +RQK R V SEL E E + ++ FD GHW
Sbjct 61 FKRQSAFKTWIFAILKNKIIDYLRQKGRFVLESEL----EDENTNNSFFDEKGHWKPEYH 116
Query 121 PQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFN 180
P EE + +FW+IF+ CLN LPAK A++FM+RE +EL+S EIC++ LT S+ +
Sbjct 117 PSELQGEEETVYSDEFWLIFETCLNCLPAKQAKIFMMREFLELSSEEICQETHLTSSNLH 176
Query 181 VLMYRSRTRLRECLENK 197
+YR+R +L+ CL K
Sbjct 177 TTLYRARLQLQNCLSKK 193
>Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis
(strain 168)]
Length=187
Score = 56.2 bits (134), Expect = 2e-13
Identities = 45/175 (26%), Positives = 78/175 (45%), Gaps = 20/175 (11%)
Query 26 RQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQ 85
+ ++ + L ++ AED+ Q+A A+ ++DSF F TW++ I N ID IR+
Sbjct 28 KDKIYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRK 87
Query 86 KSRLVSMSELFKDEE----SELSIDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFD 141
K + + D E L++ + A G + PE+ + +
Sbjct 88 KK-----PDYYLDAEVAGTEGLTMYSQIVADG-----------VLPEDAVVSLELSNTIQ 131
Query 142 ACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRECLEN 196
+ LP KY V +L+ + EL+ EI E L + V ++R R LR+ L +
Sbjct 132 QKILKLPDKYRTVIVLKYIDELSLIEIGEILNIPVGTVKTRIHRGREALRKQLRD 186
>P44790 ECF RNA polymerase sigma-E factor [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=189
Score = 55.8 bits (133), Expect = 3e-13
Identities = 38/153 (25%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ++ A++ ++SF G +AF TW++ I N + + + R ++ ++
Sbjct 48 DVVQESFIKAYRSIESFRGESAFYTWLYRIAVNTAKNYLTAQGRRPPNEDILAEDAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
+D H + P+ EM+ + I+FD +++LP LRE+ L+
Sbjct 106 ----YDVGTHLRDVDTPE-----NEMLSSELERIVFDT-IHNLPEDLKTAITLRELEGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
+I E ++ V ++R+ RE +ENK
Sbjct 156 YEDIAEIMDCPVGTVRSRIFRA----REMIENK 184
>P9WGG5 ECF RNA polymerase sigma factor SigG [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=370
Score = 54.7 bits (130), Expect = 2e-12
Identities = 40/178 (22%), Positives = 80/178 (45%), Gaps = 22/178 (12%)
Query 26 RQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQ 85
R++++ SL AED+VQ+ L A++ + F G+++ +TW+ I N + +
Sbjct 66 RRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEG 125
Query 86 KSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSP------------EEMMEQ 133
+ R + L + D SG + +WL P + +
Sbjct 126 RRRRPLPTGLGRPSA---------DPSGELVE-RREVSWLEPLPDVTDDPADPSTIVGNR 175
Query 134 QDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLR 191
+ + F A L HL + V +LR+V++ S+E+ + + + N L+ R+R++L+
Sbjct 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
Score = 16.9 bits (32), Expect = 5.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 0/31 (0%)
Query 88 RLVSMSELFKDEESELSIDALFDASGHWHKY 118
RL+ +S L ++ E + + D S H Y
Sbjct 35 RLIDVSVLAENSGREPADERRGDFSAHTEPY 65
>P9WGG4 ECF RNA polymerase sigma factor SigG [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=370
Score = 54.7 bits (130), Expect = 2e-12
Identities = 40/178 (22%), Positives = 80/178 (45%), Gaps = 22/178 (12%)
Query 26 RQQMIKFAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQ 85
R++++ SL AED+VQ+ L A++ + F G+++ +TW+ I N + +
Sbjct 66 RRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEG 125
Query 86 KSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLSP------------EEMMEQ 133
+ R + L + D SG + +WL P + +
Sbjct 126 RRRRPLPTGLGRPSA---------DPSGELVE-RREVSWLEPLPDVTDDPADPSTIVGNR 175
Query 134 QDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLR 191
+ + F A L HL + V +LR+V++ S+E+ + + + N L+ R+R++L+
Sbjct 176 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKSAEVADAIGTSTVAVNSLLQRARSQLQ 233
Score = 16.9 bits (32), Expect = 5.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 0/31 (0%)
Query 88 RLVSMSELFKDEESELSIDALFDASGHWHKY 118
RL+ +S L ++ E + + D S H Y
Sbjct 35 RLIDVSVLAENSGREPADERRGDFSAHTEPY 65
>P0AGB7 ECF RNA polymerase sigma-E factor [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=191
Score = 50.8 bits (120), Expect = 2e-11
Identities = 41/153 (27%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ+A A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>P0AGB8 ECF RNA polymerase sigma-E factor [Escherichia coli O157:H7]
Length=191
Score = 50.8 bits (120), Expect = 2e-11
Identities = 41/153 (27%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ+A A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>P0AGB9 ECF RNA polymerase sigma-E factor [Shigella flexneri]
Length=191
Score = 50.8 bits (120), Expect = 2e-11
Identities = 41/153 (27%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ+A A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>P0AGB6 ECF RNA polymerase sigma-E factor [Escherichia coli (strain
K12)]
Length=191
Score = 50.8 bits (120), Expect = 2e-11
Identities = 41/153 (27%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ+A A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>P0A2F1 ECF RNA polymerase sigma-E factor [Salmonella typhi]
Length=191
Score = 49.7 bits (117), Expect = 5e-11
Identities = 40/153 (26%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ++ A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>P0A2F0 ECF RNA polymerase sigma-E factor [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=191
Score = 49.7 bits (117), Expect = 5e-11
Identities = 40/153 (26%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ++ A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>D0ZSY9 ECF RNA polymerase sigma-E factor [Salmonella typhimurium
(strain 14028s / SGSC 2262)]
Length=191
Score = 49.7 bits (117), Expect = 5e-11
Identities = 40/153 (26%), Positives = 70/153 (46%), Gaps = 16/153 (10%)
Query 45 DVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESELS 104
DVVQ++ A++ LDSF G +AF TW++ I N + + + R S++ E
Sbjct 48 DVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAEN-- 105
Query 105 IDALFDASGHWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVIELN 164
F++ G + P+ + EE+ + I+F + LP LRE+ L+
Sbjct 106 ----FESGGALKEISNPENLMLSEELRQ-----IVF-RTIESLPEDLRMAITLRELDGLS 155
Query 165 SSEICEKLELTVSHFNVLMYRSRTRLRECLENK 197
EI ++ V ++R+ RE ++NK
Sbjct 156 YEEIAAIMDCPVGTVRSRIFRA----REAIDNK 184
>A0QTP2 ECF RNA polymerase sigma factor SigH [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=215
Score = 43.5 bits (101), Expect = 9e-09
Identities = 38/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (8%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
AED++Q+ + A+ SF K W++ IL N I+ R+K R S + + +
Sbjct 51 AEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPSEYPTDEITDWQ 110
Query 103 LSIDALFDASG-HWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVI 161
L+ +A ++G + EA +A E A L LP ++ +V
Sbjct 111 LASNAEHSSTGLRSAEVEALEALPDTE-----------IKAALQALPEEFRMAVYYADVE 159
Query 162 ELNSSEICEKLELTVSHFNVLMYRSRTRLRECL 194
EI E +E + ++R R +LR+ L
Sbjct 160 GFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLL 192
>P9WGH9 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=216
Score = 38.9 bits (89), Expect = 3e-07
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (8%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
AED++Q+ + A+ SF K W++ IL N I+ R+K R + + + +
Sbjct 54 AEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQ 113
Query 103 LSIDALFDASG-HWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVI 161
L+ +A ++G + EA +A L E+ E L LP ++ +V
Sbjct 114 LASNAEHSSTGLRSAEVEALEA-LPDTEIKE----------ALQALPEEFRMAVYYADVE 162
Query 162 ELNSSEICEKLELTVSHFNVLMYRSRTRLRECL 194
EI E ++ + ++R R +LR L
Sbjct 163 GFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195
>P9WGH8 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=216
Score = 38.9 bits (89), Expect = 3e-07
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (8%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
AED++Q+ + A+ SF K W++ IL N I+ R+K R + + + +
Sbjct 54 AEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQ 113
Query 103 LSIDALFDASG-HWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVI 161
L+ +A ++G + EA +A L E+ E L LP ++ +V
Sbjct 114 LASNAEHSSTGLRSAEVEALEA-LPDTEIKE----------ALQALPEEFRMAVYYADVE 162
Query 162 ELNSSEICEKLELTVSHFNVLMYRSRTRLRECL 194
EI E ++ + ++R R +LR L
Sbjct 163 GFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195
>P66808 ECF RNA polymerase sigma factor SigH [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=216
Score = 38.9 bits (89), Expect = 3e-07
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (8%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLVSMSELFKDEESE 102
AED++Q+ + A+ SF K W++ IL N I+ R+K R + + + +
Sbjct 54 AEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQ 113
Query 103 LSIDALFDASG-HWHKYEAPQAWLSPEEMMEQQDFWIIFDACLNHLPAKYAQVFMLREVI 161
L+ +A ++G + EA +A L E+ E L LP ++ +V
Sbjct 114 LASNAEHSSTGLRSAEVEALEA-LPDTEIKE----------ALQALPEEFRMAVYYADVE 162
Query 162 ELNSSEICEKLELTVSHFNVLMYRSRTRLRECL 194
EI E ++ + ++R R +LR L
Sbjct 163 GFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLL 195
>P9WGG8 ECF RNA polymerase sigma factor SigD [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=212
Score = 38.5 bits (88), Expect = 4e-07
Identities = 37/179 (21%), Positives = 73/179 (41%), Gaps = 31/179 (17%)
Query 22 LQDLRQQMIKFAVLQLASLPH----AEDVVQDALASAFQHLDSFTGRAA-FKTWVFAILK 76
L+ +R ++++ ++ ++ A+DV Q+ + L + R F +++ I
Sbjct 48 LETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAA 107
Query 77 NKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLS---PEEMMEQ 133
+K+ D R R D + A P+ W + PE+M +
Sbjct 108 HKVADAHRAAGR-----------------DRAYPAE------TLPERWSADAGPEQMAIE 144
Query 134 QDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
D + L LPAK ++ +LR V+ L++ E + T V +R+ RL++
Sbjct 145 ADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD 203
>P66812 ECF RNA polymerase sigma factor SigD [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=212
Score = 38.5 bits (88), Expect = 4e-07
Identities = 37/179 (21%), Positives = 73/179 (41%), Gaps = 31/179 (17%)
Query 22 LQDLRQQMIKFAVLQLASLPH----AEDVVQDALASAFQHLDSFTGRAA-FKTWVFAILK 76
L+ +R ++++ ++ ++ A+DV Q+ + L + R F +++ I
Sbjct 48 LETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAA 107
Query 77 NKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLS---PEEMMEQ 133
+K+ D R R D + A P+ W + PE+M +
Sbjct 108 HKVADAHRAAGR-----------------DRAYPAE------TLPERWSADAGPEQMAIE 144
Query 134 QDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
D + L LPAK ++ +LR V+ L++ E + T V +R+ RL++
Sbjct 145 ADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD 203
>P9WGG9 ECF RNA polymerase sigma factor SigD [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=212
Score = 38.5 bits (88), Expect = 4e-07
Identities = 37/179 (21%), Positives = 73/179 (41%), Gaps = 31/179 (17%)
Query 22 LQDLRQQMIKFAVLQLASLPH----AEDVVQDALASAFQHLDSFTGRAA-FKTWVFAILK 76
L+ +R ++++ ++ ++ A+DV Q+ + L + R F +++ I
Sbjct 48 LETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAA 107
Query 77 NKIIDLIRQKSRLVSMSELFKDEESELSIDALFDASGHWHKYEAPQAWLS---PEEMMEQ 133
+K+ D R R D + A P+ W + PE+M +
Sbjct 108 HKVADAHRAAGR-----------------DRAYPAE------TLPERWSADAGPEQMAIE 144
Query 134 QDFWIIFDACLNHLPAKYAQVFMLREVIELNSSEICEKLELTVSHFNVLMYRSRTRLRE 192
D + L LPAK ++ +LR V+ L++ E + T V +R+ RL++
Sbjct 145 ADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRLKD 203
>P37978 RNA polymerase sigma factor CnrH [Cupriavidus metallidurans
(strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)]
Length=191
Score = 37.7 bits (86), Expect = 7e-07
Identities = 18/41 (44%), Positives = 24/41 (59%), Gaps = 0/41 (0%)
Query 44 EDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIR 84
+DVVQD +A+ LD F F+ W+F I NK+ DL R
Sbjct 48 DDVVQDTFVAAWHALDDFDPDRPFRAWLFRIGLNKMRDLYR 88
>P94370 RNA polymerase sigma factor SigY [Bacillus subtilis (strain
168)]
Length=178
Score = 37.4 bits (85), Expect = 9e-07
Identities = 15/46 (33%), Positives = 27/46 (59%), Gaps = 0/46 (0%)
Query 43 AEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSR 88
+E++VQ+ + HL SF GR+ F TW+ +I +D +++ R
Sbjct 46 SEELVQETFLKGYIHLRSFQGRSKFSTWLISIASRLYLDHQKKRKR 91
>B3Q6P8 ECF RNA polymerase sigma factor EcfG [Rhodopseudomonas
palustris (strain TIE-1)]
Length=181
Score = 37.0 bits (84), Expect = 1e-06
Identities = 19/59 (32%), Positives = 31/59 (53%), Gaps = 0/59 (0%)
Query 32 FAVLQLASLPHAEDVVQDALASAFQHLDSFTGRAAFKTWVFAILKNKIIDLIRQKSRLV 90
FA+ + A+D+VQ+ L A ++DSF + W+F IL+N R++ R V
Sbjct 21 FAISLSGNADRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREV 79
Lambda K H a alpha
0.326 0.135 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 622380
Database: 2f55935bd36da4907fdb7f30d733ba8f.SwissProt.fasta
Posted date: May 9, 2024 3:34 PM
Number of letters in database: 4,696
Number of sequences in database: 22
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
