Comparative Genomics

ACIAD0936 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 7368d0724bb78456bfc3100835302e60.TrEMBL.fasta
           11 sequences; 665 total letters



Query= ACIAD0936

Length=60
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FDM7 Putative zinc-finger domain-containing protein [Acinetobac...  120     1e-42
A0A7G2SDY6 Putative zinc-finger domain-containing protein [Acinet...  120     2e-42
S3UE67 Putative zinc-finger domain-containing protein [Acinetobac...  117     2e-41
A0A558EX06 Zf-HC2 domain-containing protein [Acinetobacter colist...  117     3e-41
N9RGB6 Putative zinc-finger domain-containing protein [Acinetobac...  110     1e-38
A0A1I6NS60 Putative zinc-finger [Acinetobacter bohemicus]             109     4e-38
N8P0M5 Putative zinc-finger domain-containing protein [Acinetobac...  109     4e-38
N9KB41 Putative zinc-finger domain-containing protein [Acinetobac...  107     2e-37
V2V834 Putative zinc-finger domain-containing protein [Acinetobac...  105     9e-37
D0S2M7 Putative zinc-finger domain-containing protein [Acinetobac...  105     9e-37
N9RER8 Putative zinc-finger domain-containing protein [Acinetobac...  105     1e-36


>Q6FDM7 Putative zinc-finger domain-containing protein [Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=59

 Score = 120 bits (301),  Expect = 1e-42
 Identities = 59/59 (100%), Positives = 59/59 (100%), Gaps = 0/59 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  59
           MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH
Sbjct  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  59


>A0A7G2SDY6 Putative zinc-finger domain-containing protein [Acinetobacter 
sp]
Length=67

 Score = 120 bits (301),  Expect = 2e-42
 Identities = 59/59 (100%), Positives = 59/59 (100%), Gaps = 0/59 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  59
           MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH
Sbjct  9   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  67


>S3UE67 Putative zinc-finger domain-containing protein [Acinetobacter 
colistiniresistens]
Length=59

 Score = 117 bits (293),  Expect = 2e-41
 Identities = 57/59 (97%), Positives = 58/59 (98%), Gaps = 0/59 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  59
           MLTCRQATQLLSEKQDRALLLREQSNLQLHLL CRSCRRYGKQI+TLSQLSKEFKKFDH
Sbjct  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLACRSCRRYGKQIRTLSQLSKEFKKFDH  59


>A0A558EX06 Zf-HC2 domain-containing protein [Acinetobacter colistiniresistens]
Length=67

 Score = 117 bits (293),  Expect = 3e-41
 Identities = 57/59 (97%), Positives = 58/59 (98%), Gaps = 0/59 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFDH  59
           MLTCRQATQLLSEKQDRALLLREQSNLQLHLL CRSCRRYGKQI+TLSQLSKEFKKFDH
Sbjct  9   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLACRSCRRYGKQIRTLSQLSKEFKKFDH  67


>N9RGB6 Putative zinc-finger domain-containing protein [Acinetobacter 
sp. NIPH 2100]
Length=59

 Score = 110 bits (275),  Expect = 1e-38
 Identities = 54/58 (93%), Positives = 55/58 (95%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LLLREQSNLQLHLL CRSCRRYGKQI+TLSQLSKEFK FD
Sbjct  1   MLTCRQATQLLSEKQDRTLLLREQSNLQLHLLACRSCRRYGKQIRTLSQLSKEFKTFD  58


>A0A1I6NS60 Putative zinc-finger [Acinetobacter bohemicus]
Length=59

 Score = 109 bits (272),  Expect = 4e-38
 Identities = 54/58 (93%), Positives = 54/58 (93%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LLLREQSNLQLHLL CRSCRRYGKQIKTLSQLSK FK FD
Sbjct  1   MLTCRQATQLLSEKQDRPLLLREQSNLQLHLLVCRSCRRYGKQIKTLSQLSKAFKNFD  58


>N8P0M5 Putative zinc-finger domain-containing protein [Acinetobacter 
bohemicus ANC 3994]
Length=59

 Score = 109 bits (272),  Expect = 4e-38
 Identities = 54/58 (93%), Positives = 54/58 (93%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LLLREQSNLQLHLL CRSCRRYGKQIKTLSQLSK FK FD
Sbjct  1   MLTCRQATQLLSEKQDRPLLLREQSNLQLHLLVCRSCRRYGKQIKTLSQLSKAFKNFD  58


>N9KB41 Putative zinc-finger domain-containing protein [Acinetobacter 
sp. ANC 3929]
Length=59

 Score = 107 bits (267),  Expect = 2e-37
 Identities = 52/58 (90%), Positives = 54/58 (93%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LL REQSNLQLHLL CRSCRRYGKQI+TLSQLSK+FK FD
Sbjct  1   MLTCRQATQLLSEKQDRVLLFREQSNLQLHLLACRSCRRYGKQIRTLSQLSKKFKTFD  58


>V2V834 Putative zinc-finger domain-containing protein [Acinetobacter 
tjernbergiae DSM 14971 = CIP 107465]
Length=59

 Score = 105 bits (263),  Expect = 9e-37
 Identities = 52/58 (90%), Positives = 54/58 (93%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR L+LREQSNLQLHLL CRSCRRYGKQIKTLSQLSK F K+D
Sbjct  1   MLTCRQATQLLSEKQDRQLVLREQSNLQLHLLVCRSCRRYGKQIKTLSQLSKTFIKYD  58


>D0S2M7 Putative zinc-finger domain-containing protein [Acinetobacter 
calcoaceticus RUH2202]
Length=59

 Score = 105 bits (263),  Expect = 9e-37
 Identities = 52/58 (90%), Positives = 53/58 (91%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LLLREQS LQLHLLTCRSCRRY KQIKT+SQLSK FK FD
Sbjct  1   MLTCRQATQLLSEKQDRPLLLREQSGLQLHLLTCRSCRRYSKQIKTISQLSKAFKSFD  58


>N9RER8 Putative zinc-finger domain-containing protein [Acinetobacter 
courvalinii]
Length=59

 Score = 105 bits (262),  Expect = 1e-36
 Identities = 52/58 (90%), Positives = 53/58 (91%), Gaps = 0/58 (0%)

Query  1   MLTCRQATQLLSEKQDRALLLREQSNLQLHLLTCRSCRRYGKQIKTLSQLSKEFKKFD  58
           MLTCRQATQLLSEKQDR LLL EQSNLQLHL  CRSCRRYGKQI+TLSQLSKEFKK D
Sbjct  1   MLTCRQATQLLSEKQDRPLLLLEQSNLQLHLFACRSCRRYGKQIRTLSQLSKEFKKVD  58



Lambda      K        H        a         alpha
   0.335    0.139    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 20554


  Database: 7368d0724bb78456bfc3100835302e60.TrEMBL.fasta
    Posted date:  May 9, 2024  12:06 PM
  Number of letters in database: 665
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40