BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 38a597f83c726cb9793def2f83767328.SwissProt.fasta
           1 sequences; 482 total letters



Query= ACIAD0941

Length=157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O67711 Flagellar hook protein FlgE [Aquifex aeolicus (strain VF5)]    37.0    1e-07


>O67711 Flagellar hook protein FlgE [Aquifex aeolicus (strain 
VF5)]
Length=482

 Score = 37.0 bits (84),  Expect = 1e-07
 Identities = 24/78 (31%), Positives = 41/78 (53%), Gaps = 1/78 (1%)

Query  14   IDADSKQRKVMINL-VLVINGIEVGTLEDGTYIPTFKASLNRIVNPEKLDIKKIELSAEG  72
            +D D   R  +I+L VL  +G+ VG   +G  +PT++ +L +  +PE+L  K   L A  
Sbjct  377  MDQDGYARGELIDLYVLSEDGVVVGVYSNGETLPTYRLALAQFTDPEELVKKGSNLYASV  436

Query  73   KFDYFLNPNTTGKYMASL  90
            K    L P  + K  +++
Sbjct  437  KTPTILLPGGSNKIRSAV  454


 Score = 17.7 bits (34),  Expect = 0.25
 Identities = 15/69 (22%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query  41   DGTYIPTFKAS--LNRIVNPEKLDIK-KIELSAEGKFDYFLNPNTTGKYMASLGDS----  93
            +G Y+  FK +     +   +  DI+ + ++  +   + + NP T     A + D     
Sbjct  129  NGLYVQGFKVNPVTGEVTGTQLEDIRVETQIPPKATGEIYFNPPTNLDERAPIIDQTTTP  188

Query  94   FDDFDIFFY  102
            F+  D F Y
Sbjct  189  FNPLDSFTY  197


 Score = 15.0 bits (27),  Expect = 1.8
 Identities = 7/24 (29%), Positives = 10/24 (42%), Gaps = 2/24 (8%)

Query  61  LDIKKIELSAEGKFDYFLNPNTTG  84
           +D+ +  L      D   N NT G
Sbjct  12  MDVSRFALDVTS--DNLANANTVG  33



Lambda      K        H        a         alpha
   0.326    0.144    0.429    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 60324


  Database: 38a597f83c726cb9793def2f83767328.SwissProt.fasta
    Posted date:  May 20, 2024  8:43 AM
  Number of letters in database: 482
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40