BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 52fcb6cc672d41344e992814b1f5f1a4.SwissProt.fasta
           1 sequences; 1,604 total letters



Query= ACIAD0944

Length=144
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q4UNE0 Putative surface cell antigen sca2 [Rickettsia felis (stra...  33.1    6e-06


>Q4UNE0 Putative surface cell antigen sca2 [Rickettsia felis (strain 
ATCC VR-1525 / URRWXCal2)]
Length=1604

 Score = 33.1 bits (74),  Expect = 6e-06
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query  58   KDNILIEIELYDLDARLFISNKNVLGISCLELKEILKS-LDYTYILDEENLGINIFDDTI  116
            K NIL +IE+  L A   IS K++L I   +  E+LKS L+   IL+E  L  +  +  +
Sbjct  839  KQNILEKIEIQQLIANKDISRKDLLDILNNKNPELLKSLLEAKVILEENKLNNSANEVDL  898

Query  117  RFYIPNID  124
            +  IP+++
Sbjct  899  KEIIPSLN  906


 Score = 17.3 bits (33),  Expect = 1.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query  48    GQLIAKCWYDKDNILIEIELYDLDARLFISNKNVLGISCLELKEILKSLDYTYILDEE-N  106
             G+++ K     +NI++   LY    R F +NKN    +    K   ++L  T I+ ++  
Sbjct  1505  GKIVFKPIATVNNIILTPSLYGNIERHF-NNKNTKVNAKATFKG--QTLQETIIIPKQPK  1561

Query  107   LGINI  111
             LG NI
Sbjct  1562  LGYNI  1566


 Score = 16.9 bits (32),  Expect = 1.4
 Identities = 7/22 (32%), Positives = 13/22 (59%), Gaps = 0/22 (0%)

Query  94    KSLDYTYILDEENLGINIFDDT  115
             K+ +YT    + N+G N ++ T
Sbjct  997   KNHNYTATDFKSNVGKNYYEST  1018


 Score = 16.5 bits (31),  Expect = 1.8
 Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 0/20 (0%)

Query  75    FISNKNVLGISCLELKEILK  94
             FI++ +V+GI+   L+  +K
Sbjct  1367  FINSHDVIGIAYSRLEFQIK  1386


 Score = 15.4 bits (28),  Expect = 4.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (2%)

Query  1    MDFYYSKTDG-LTILRGVRNREGVRKAIGTEYRVLPKTEFSENSTDSFGQL  50
            +D+   KTD  L   + VR  E  +KA+   Y     T   E    + GQ+
Sbjct  149  IDYDAKKTDNKLEKNQNVRRVEKDKKALLDLYIHSITTSVKEKEYITTGQV  199


 Score = 14.6 bits (26),  Expect = 7.6
 Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 0/15 (0%)

Query  119  YIPNIDEDESSAKVE  133
            ++P I E  +  KV+
Sbjct  283  FLPKISEIMNEFKVD  297


 Score = 14.6 bits (26),  Expect = 7.6
 Identities = 8/35 (23%), Positives = 17/35 (49%), Gaps = 1/35 (3%)

Query  19   NREGVRKAIGTEYRVLPKTEFSENSTDSFGQLIAK  53
            NR+   +   TE  +  + +  EN  + F +++ K
Sbjct  370  NRKQEDQLSKTEQHLKQQIKLEENK-EEFKEILTK  403



Lambda      K        H        a         alpha
   0.322    0.143    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 174381


  Database: 52fcb6cc672d41344e992814b1f5f1a4.SwissProt.fasta
    Posted date:  May 9, 2024  1:17 AM
  Number of letters in database: 1,604
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40