BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 506093bfdc06051e54b4ef3120f4a71f.SwissProt.fasta
1 sequences; 1,829 total letters
Query= ACIAD0956
Length=90
Score E
Sequences producing significant alignments: (Bits) Value
G5EBZ4 Protein let-418 [Caenorhabditis elegans] 31.6 6e-06
>G5EBZ4 Protein let-418 [Caenorhabditis elegans]
Length=1829
Score = 31.6 bits (70), Expect = 6e-06
Identities = 17/46 (37%), Positives = 28/46 (61%), Gaps = 0/46 (0%)
Query 12 YLTEQEQFFNNLEINIQKAKVKYAQMKEEAKAKAAAATQAAAKAAL 57
++ +QEQ ++L + + A++K A +EE K A A +AA KA L
Sbjct 202 FIKQQEQLEDDLVKDKEDARIKRAAEREEKKKGALEAARAAKKAKL 247
Score = 15.0 bits (27), Expect = 3.6
Identities = 5/25 (20%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 34 YAQMKEEAKAKAAAATQAAAKAALW 58
+++ + A+ + + AAA+ +W
Sbjct 1104 FSEDLDAAEGEGSEKKGAAAQEIVW 1128
Lambda K H a alpha
0.329 0.137 0.372 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 109800
Database: 506093bfdc06051e54b4ef3120f4a71f.SwissProt.fasta
Posted date: May 9, 2024 5:24 PM
Number of letters in database: 1,829
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40