BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: f86d79866f6a8eb1033354e8556d0b4d.SwissProt.fasta
6 sequences; 960 total letters
Query= ACIAD0962
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
Q58549 ADP-ribose pyrophosphatase [Methanocaldococcus jannaschii ... 48.9 2e-11
Q8Z5H2 GDP-mannose mannosyl hydrolase [Salmonella typhi] 41.6 7e-09
Q9F7A2 GDP-mannose mannosyl hydrolase [Salmonella typhimurium (st... 41.6 7e-09
P32056 GDP-mannose mannosyl hydrolase [Escherichia coli (strain K... 40.0 2e-08
P65553 GDP-mannose mannosyl hydrolase [Shigella flexneri] 39.7 3e-08
P65552 GDP-mannose mannosyl hydrolase [Escherichia coli O157:H7] 39.7 3e-08
>Q58549 ADP-ribose pyrophosphatase [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440)]
Length=169
Score = 48.9 bits (115), Expect = 2e-11
Identities = 36/124 (29%), Positives = 63/124 (51%), Gaps = 5/124 (4%)
Query 31 MAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEKTGIDSPY 90
+A+ + + +ILLI+R N P K +ALPGGFV E + + R++ E+TG+
Sbjct 43 VAVDGIIEKDNKILLIKRKNNPFKGCFALPGGFV--ECGETVEEAVVREIKEETGLIPKV 100
Query 91 LEQVASIGNAKRDPRGWSVTVLYFALINFKAYQQQIQHSEHSEWVTLEQALKLDLAFDHH 150
+ + RDPRG ++++ F L + ++ +E+ L K LAFDH
Sbjct 101 KSLLGVYSSPDRDPRGHVISIV-FILDVIGGELKAGDDAKEAEFFDLNNLPK--LAFDHE 157
Query 151 DLLQ 154
+++
Sbjct 158 KIIK 161
>Q8Z5H2 GDP-mannose mannosyl hydrolase [Salmonella typhi]
Length=157
Score = 41.6 bits (96), Expect = 7e-09
Identities = 26/66 (39%), Positives = 38/66 (58%), Gaps = 5/66 (8%)
Query 24 SPLMTVDMAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEK 83
+PL+++D F V+ GQ +ILL QR N P + YW +PGG V +D+ L A R +
Sbjct 15 TPLISLD---FIVENGQGEILLGQRLNRPAQGYWFVPGGRVC--KDETLEAAFARLTQAE 69
Query 84 TGIDSP 89
G+ P
Sbjct 70 LGVRLP 75
Score = 18.1 bits (35), Expect = 0.55
Identities = 8/22 (36%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 151 DLLQQAFARLNNKTRYTALPIS 172
+ L+ AFARL LP++
Sbjct 56 ETLEAAFARLTQAELGVRLPLA 77
>Q9F7A2 GDP-mannose mannosyl hydrolase [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=157
Score = 41.6 bits (96), Expect = 7e-09
Identities = 26/66 (39%), Positives = 38/66 (58%), Gaps = 5/66 (8%)
Query 24 SPLMTVDMAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEK 83
+PL+++D F V+ GQ +ILL QR N P + YW +PGG V +D+ L A R +
Sbjct 15 TPLISLD---FIVENGQGEILLGQRLNRPAQGYWFVPGGRVC--KDETLEAAFARLTQAE 69
Query 84 TGIDSP 89
G+ P
Sbjct 70 LGVRLP 75
Score = 18.1 bits (35), Expect = 0.55
Identities = 8/22 (36%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 151 DLLQQAFARLNNKTRYTALPIS 172
+ L+ AFARL LP++
Sbjct 56 ETLEAAFARLTQAELGVRLPLA 77
>P32056 GDP-mannose mannosyl hydrolase [Escherichia coli (strain
K12)]
Length=159
Score = 40.0 bits (92), Expect = 2e-08
Identities = 35/130 (27%), Positives = 62/130 (48%), Gaps = 15/130 (12%)
Query 24 SPLMTVDMAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEK 83
+PL+++D F V+ + + LL +R+N P + YW +PGG V ++D+ L A R + +
Sbjct 15 TPLVSLD---FIVENSRGEFLLGKRTNRPAQGYWFVPGGRV--QKDETLEAAFERLTMAE 69
Query 84 TGIDSPYLE-QVASIGNAKRDPR--GWSVTVLYFAL-INFKAYQQQI-----QHSEHSEW 134
G+ P Q + D G T Y L F+ ++++ QH ++ W
Sbjct 70 LGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDY-RW 128
Query 135 VTLEQALKLD 144
+T + L D
Sbjct 129 LTSDALLASD 138
Score = 16.5 bits (31), Expect = 1.8
Identities = 10/24 (42%), Positives = 13/24 (54%), Gaps = 3/24 (13%)
Query 209 VVEETDQSKIAGK---RPAQLYRF 229
+VE + + GK RPAQ Y F
Sbjct 23 IVENSRGEFLLGKRTNRPAQGYWF 46
>P65553 GDP-mannose mannosyl hydrolase [Shigella flexneri]
Length=159
Score = 39.7 bits (91), Expect = 3e-08
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (8%)
Query 24 SPLMTVDMAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEK 83
+PL+++D F V+ + + LL +R+N P + YW +PGG V ++D+ L A R + +
Sbjct 15 TPLVSLD---FIVENSRGEFLLGKRTNRPAQGYWFVPGGRV--QKDETLEAAFERLTMAE 69
Query 84 TGIDSP 89
G+ P
Sbjct 70 LGLRLP 75
Score = 16.5 bits (31), Expect = 1.8
Identities = 10/24 (42%), Positives = 13/24 (54%), Gaps = 3/24 (13%)
Query 209 VVEETDQSKIAGK---RPAQLYRF 229
+VE + + GK RPAQ Y F
Sbjct 23 IVENSRGEFLLGKRTNRPAQGYWF 46
>P65552 GDP-mannose mannosyl hydrolase [Escherichia coli O157:H7]
Length=159
Score = 39.7 bits (91), Expect = 3e-08
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 5/66 (8%)
Query 24 SPLMTVDMAIFSVDQGQLQILLIQRSNYPQKSYWALPGGFVDLEQDQNLMACAHRKLLEK 83
+PL+++D F V+ + + LL +R+N P + YW +PGG V ++D+ L A R + +
Sbjct 15 TPLVSLD---FIVENSRGEFLLGKRTNRPAQGYWFVPGGRV--QKDETLEAAFERLTMAE 69
Query 84 TGIDSP 89
G+ P
Sbjct 70 LGLRLP 75
Score = 16.5 bits (31), Expect = 1.8
Identities = 10/24 (42%), Positives = 13/24 (54%), Gaps = 3/24 (13%)
Query 209 VVEETDQSKIAGK---RPAQLYRF 229
+VE + + GK RPAQ Y F
Sbjct 23 IVENSRGEFLLGKRTNRPAQGYWF 46
Lambda K H a alpha
0.323 0.137 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 168192
Database: f86d79866f6a8eb1033354e8556d0b4d.SwissProt.fasta
Posted date: May 20, 2024 12:20 AM
Number of letters in database: 960
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
