BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a9204a8e28f3f3a70a0008f3f67b956e.SwissProt.fasta
14 sequences; 3,213 total letters
Query= ACIAD0978
Length=229
Score E
Sequences producing significant alignments: (Bits) Value
O05494 Uncharacterized HTH-type transcriptional regulator YdhC [B... 77.8 5e-21
P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH [S... 58.5 5e-14
Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH [E... 58.5 5e-14
P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH [E... 58.5 5e-14
P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli ... 58.5 5e-14
Q8GAL4 Probable D-xylose utilization operon transcriptional repre... 57.8 1e-13
P0ACL6 Glc operon transcriptional activator [Escherichia coli O6:... 50.4 4e-11
P0ACL5 Glc operon transcriptional activator [Escherichia coli (st... 50.4 4e-11
P46833 Gluconate operon transcriptional repressor [Bacillus liche... 50.1 5e-11
P10585 Gluconate operon transcriptional repressor [Bacillus subti... 50.1 5e-11
P70790 Uncharacterized HTH-type transcriptional regulator in the ... 45.8 8e-10
P37338 HTH-type transcriptional repressor GlaR [Escherichia coli ... 45.8 1e-09
P76114 HTH-type transcriptional regulator McbR [Escherichia coli ... 42.4 2e-08
P37335 Uncharacterized HTH-type transcriptional regulator BphR [P... 41.6 4e-08
>O05494 Uncharacterized HTH-type transcriptional regulator YdhC
[Bacillus subtilis (strain 168)]
Length=224
Score = 77.8 bits (190), Expect = 5e-21
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query 10 KLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREIS 69
+L+KMI +G + G RI E A+ GVSR PIR A RLLE++GLL + G+ + ++
Sbjct 19 QLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRNGFSITSLT 78
Query 70 DELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEELEKY 129
+ V + ++R LE LA + + ++ E++ IL + +EETEK + E D E+ +
Sbjct 79 AKDVDEIYKIRIPLEQLAVELVIDEA-DEEELTILEKQLEETEKAIHNGTE--DTEIIR- 134
Query 130 HHYNVIFHDTIIEGAKNIALMQALAKNNQL 159
N FH+ +++ + N L L N L
Sbjct 135 --LNQKFHELLVDFSHNRHLKNLLEHVNDL 162
>P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH
[Shigella flexneri]
Length=228
Score = 58.5 bits (140), Expect = 5e-14
Identities = 56/218 (26%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query 6 QVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVV 65
Q+ LR+ I+ + G+ ++E + VSRQP+R AF L + GL+ P RG V
Sbjct 16 QIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYV 75
Query 66 REISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEE 125
+IS V + +R +E A+ A +TE Q C + + L R ++
Sbjct 76 NKISMAQVRNGSFIRQAIECAVARRAASM-ITESQ------CYQLEQNLHQQRIAIERKQ 128
Query 126 LEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEYRRLHYAH 185
L+ + + FH + + A + L +N + + + +++D R
Sbjct 129 LDDFFELDDNFHQLLTQIA-DCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLR----- 182
Query 186 LQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQI 223
QH I++AL R E M +H + + E+VRQI
Sbjct 183 -QHLDIFSALQKRDGDAVERAMTQH--LQEISESVRQI 217
>Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=228
Score = 58.5 bits (140), Expect = 5e-14
Identities = 56/218 (26%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query 6 QVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVV 65
Q+ LR+ I+ + G+ ++E + VSRQP+R AF L + GL+ P RG V
Sbjct 16 QIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYV 75
Query 66 REISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEE 125
+IS V + +R +E A+ A +TE Q C + + L R ++
Sbjct 76 NKISMAQVRNGSFIRQAIECAVARRAASM-ITESQ------CYQLEQNLHQQRIAIERKQ 128
Query 126 LEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEYRRLHYAH 185
L+ + + FH + + A + L +N + + + +++D R
Sbjct 129 LDDFFELDDNFHQLLTQIA-DCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLR----- 182
Query 186 LQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQI 223
QH I++AL R E M +H + + E+VRQI
Sbjct 183 -QHLDIFSALQKRDGDAVERAMTQH--LQEISESVRQI 217
>P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O157:H7]
Length=228
Score = 58.5 bits (140), Expect = 5e-14
Identities = 56/218 (26%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query 6 QVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVV 65
Q+ LR+ I+ + G+ ++E + VSRQP+R AF L + GL+ P RG V
Sbjct 16 QIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYV 75
Query 66 REISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEE 125
+IS V + +R +E A+ A +TE Q C + + L R ++
Sbjct 76 NKISMAQVRNGSFIRQAIECAVARRAASM-ITESQ------CYQLEQNLHQQRIAIERKQ 128
Query 126 LEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEYRRLHYAH 185
L+ + + FH + + A + L +N + + + +++D R
Sbjct 129 LDDFFELDDNFHQLLTQIA-DCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLR----- 182
Query 186 LQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQI 223
QH I++AL R E M +H + + E+VRQI
Sbjct 183 -QHLDIFSALQKRDGDAVERAMTQH--LQEISESVRQI 217
>P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli
(strain K12)]
Length=228
Score = 58.5 bits (140), Expect = 5e-14
Identities = 56/218 (26%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query 6 QVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVV 65
Q+ LR+ I+ + G+ ++E + VSRQP+R AF L + GL+ P RG V
Sbjct 16 QIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYV 75
Query 66 REISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEE 125
+IS V + +R +E A+ A +TE Q C + + L R ++
Sbjct 76 NKISMAQVRNGSFIRQAIECAVARRAASM-ITESQ------CYQLEQNLHQQRIAIERKQ 128
Query 126 LEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEYRRLHYAH 185
L+ + + FH + + A + L +N + + + +++D R
Sbjct 129 LDDFFELDDNFHQLLTQIA-DCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLR----- 182
Query 186 LQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQI 223
QH I++AL R E M +H + + E+VRQI
Sbjct 183 -QHLDIFSALQKRDGDAVERAMTQH--LQEISESVRQI 217
>Q8GAL4 Probable D-xylose utilization operon transcriptional repressor
[Paenarthrobacter nicotinovorans]
Length=226
Score = 57.8 bits (138), Expect = 1e-13
Identities = 40/139 (29%), Positives = 68/139 (49%), Gaps = 10/139 (7%)
Query 15 IIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREISDELVH 74
I G L G+ + E+ A LG S+ P+R AFR L GLL G VR+++++ +
Sbjct 25 IAQGRLPLGAPVREMEIAAQLGTSQTPVREAFRELAALGLLESRIHVGTRVRQLAEKDLV 84
Query 75 DALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGD-EELEKYHHYN 133
+A+ +R LEG+A + A N H+ EE F E + + + +
Sbjct 85 EAVPIRSALEGIAGRLAA---------NNYHKHAEEVRGSFEAMKEVAEGGDRRVFAAAS 135
Query 134 VIFHDTIIEGAKNIALMQA 152
FH +++ A+N +L++A
Sbjct 136 TTFHRSVVRAAENASLLRA 154
>P0ACL6 Glc operon transcriptional activator [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=254
Score = 50.4 bits (119), Expect = 4e-11
Identities = 60/234 (26%), Positives = 93/234 (40%), Gaps = 29/234 (12%)
Query 11 LRKMIIDGELEGGSRI-AEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREIS 69
+ ++IIDG L+ G + +E E LG SR +R +L G++ R V ++
Sbjct 16 IERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRDSRVARLN 75
Query 70 -----DELVH----------DALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKL 114
L+H D L+VR +LEG +A+ A G T+ ++ C E+
Sbjct 76 RVQDTSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLG-TQADFVVITRCYEKMLAA 134
Query 115 FNGRNEFGDEELEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRA 174
E E + H FH I + + N L+ L L S A N
Sbjct 135 SENNKEISLIEHAQLDH---AFHLAICQASHNQVLVFTLQSLTDLMFNSVFASV---NNL 188
Query 175 LSEYRRLHYAHLQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQILADAE 228
++ QH IYNA++ R A+ R+H TV++ L D E
Sbjct 189 YHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHV------RTVKKNLHDIE 236
>P0ACL5 Glc operon transcriptional activator [Escherichia coli
(strain K12)]
Length=254
Score = 50.4 bits (119), Expect = 4e-11
Identities = 60/234 (26%), Positives = 93/234 (40%), Gaps = 29/234 (12%)
Query 11 LRKMIIDGELEGGSRI-AEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREIS 69
+ ++IIDG L+ G + +E E LG SR +R +L G++ R V ++
Sbjct 16 IERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRDSRVARLN 75
Query 70 -----DELVH----------DALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKL 114
L+H D L+VR +LEG +A+ A G T+ ++ C E+
Sbjct 76 RVQDTSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLG-TQADFVVITRCYEKMLAA 134
Query 115 FNGRNEFGDEELEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRA 174
E E + H FH I + + N L+ L L S A N
Sbjct 135 SENNKEISLIEHAQLDH---AFHLAICQASHNQVLVFTLQSLTDLMFNSVFASV---NNL 188
Query 175 LSEYRRLHYAHLQHCSIYNALVNRQAGRAENLMREHSSVVVLGETVRQILADAE 228
++ QH IYNA++ R A+ R+H TV++ L D E
Sbjct 189 YHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHV------RTVKKNLHDIE 236
>P46833 Gluconate operon transcriptional repressor [Bacillus licheniformis]
Length=243
Score = 50.1 bits (118), Expect = 5e-11
Identities = 43/177 (24%), Positives = 86/177 (49%), Gaps = 10/177 (6%)
Query 2 SSGHQVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTR 61
S+G +V +LR II G +E G+ ++E A VSR PIR A ++L E +I+
Sbjct 18 STGVRVACELRMRIISGLIESGTILSENKLAAEFSVSRSPIREALKILASE-KIIRLERM 76
Query 62 GYVVREISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEF 121
G VV ++++ + + +VR V+E + + + E ++ I E K+
Sbjct 77 GAVVIGLTEKEIGEIYDVRLVMETFVFERLGRANVDELVTDL--SKILEMMKV-----SI 129
Query 122 GDEELEKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEY 178
++ +++ +V+FH+TI+ + ++ + NN P+ + + + R +Y
Sbjct 130 KYKDADEFSFQDVLFHETIVRSINHSYIL--MIWNNLKPVMESFILLSMRARLKEKY 184
>P10585 Gluconate operon transcriptional repressor [Bacillus subtilis
(strain 168)]
Length=243
Score = 50.1 bits (118), Expect = 5e-11
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (6%)
Query 2 SSGHQVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTR 61
S+G +V +LR I+ G +E G+ ++E A VSR P+R A ++L E +I+
Sbjct 18 STGVRVAYELRMRIVSGLIESGTILSENTIAAEFSVSRSPVREALKILASE-KIIRLERM 76
Query 62 GYVVREISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEF 121
G VV ++++ + + +VR +LE + + + + K++ I E K+
Sbjct 77 GAVVIGLTEKKIAEIYDVRLLLETFVFERLVKIDIEPLVKDL--SKILEMMKV-----SI 129
Query 122 GDEELEKYHHYNVIFHDTII 141
E+ +++ +V+FH+TII
Sbjct 130 KYEDADEFSFQDVLFHETII 149
>P70790 Uncharacterized HTH-type transcriptional regulator in
the TAR-I ttuE-ttuC' intergenic region [Agrobacterium vitis]
Length=171
Score = 45.8 bits (107), Expect = 8e-10
Identities = 27/82 (33%), Positives = 42/82 (51%), Gaps = 0/82 (0%)
Query 11 LRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREISD 70
+R I G + AEI A LG+SR P+ A L+++GL+ P +G ++ +S
Sbjct 40 IRNAIRTNVFPPGYQAAEIEIARQLGMSRTPVHEAMARLQEDGLVRILPKKGIIICALSP 99
Query 71 ELVHDALEVRGVLEGLAAKTIA 92
+ + EV LEG AA +A
Sbjct 100 ADIEEIYEVTIALEGAAASRLA 121
>P37338 HTH-type transcriptional repressor GlaR [Escherichia coli
(strain K12)]
Length=220
Score = 45.8 bits (107), Expect = 1e-09
Identities = 48/204 (24%), Positives = 90/204 (44%), Gaps = 14/204 (7%)
Query 11 LRKMIIDGELEGGS--RIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREI 68
L+ II G + R++ + + LGV P+R A L E L+ +GY V +
Sbjct 12 LKNDIIRGNFQPDEKLRMSLLTSRYALGVG--PLREALSQLVAERLVTVVNQKGYRVASM 69
Query 69 SDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHEC--IEETEKLFNGRNEFGDEEL 126
S++ + D + R +E + +G E + ++L + + + E + ++ L
Sbjct 70 SEQELLDIFDARANMEAMLVSLAIARGGDEWEADVLAKAHLLSKLEAC-----DASEKML 124
Query 127 EKYHHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQNRALSEYRRLHYAHL 186
+++ + FH I+ G + L+Q + LA+ + + LS L H
Sbjct 125 DEWDLRHQAFHTAIVAGCGSHYLLQ--MRERLFDLAARYRFIWLRRTVLS-VEMLEDKHD 181
Query 187 QHCSIYNALVNRQAGRAENLMREH 210
QH ++ A++ R RA LMR+H
Sbjct 182 QHQTLTAAVLARDTARASELMRQH 205
>P76114 HTH-type transcriptional regulator McbR [Escherichia coli
(strain K12)]
Length=221
Score = 42.4 bits (98), Expect = 2e-08
Identities = 36/120 (30%), Positives = 55/120 (46%), Gaps = 5/120 (4%)
Query 6 QVLIKLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVV 65
QV L+ + G L+ G+R+ AE LG+S P+R A L L P + + V
Sbjct 15 QVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTV 74
Query 66 REISDELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEE 125
E+ + + +R LE L A +A + LT Q L E +E+ ++ E GD E
Sbjct 75 PEVGKRQLDEINRIRYELE-LMAVALAVENLTPQDLAELQELLEKLQQ----AQEKGDME 129
>P37335 Uncharacterized HTH-type transcriptional regulator BphR
[Paraburkholderia xenovorans (strain LB400)]
Length=245
Score = 41.6 bits (96), Expect = 4e-08
Identities = 53/223 (24%), Positives = 87/223 (39%), Gaps = 38/223 (17%)
Query 10 KLRKMIIDGELEGGSRIAEIPTAELLGVSRQPIRMAFRLLEQEGLLIKNPTRGYVVREIS 69
+LR I++G L GSR+A VS +R A LL L+ RG+ V +S
Sbjct 38 RLRADIVEGRLAAGSRLAIEDLKSRYEVSGGTVREALSLLVANNLVQTQAQRGFHVTPMS 97
Query 70 DELVHDALEVRGVLEGLAAKTIAEQGLTEQQKNILHECIEETEKLFNGRNEFGDEELEKY 129
+ + D LAA IA EC + + NG E+ + Y
Sbjct 98 LDDMRD----------LAATRIA------------LECEALRQSVLNGDAEWEARVVSSY 135
Query 130 HHYNVIFHDTIIEGAKNIALMQALAKNNQLPLASAQAITYDQN------RALSEYRRL-- 181
H +++ T+ + + ++ L SA + + Q + YRRL
Sbjct 136 HRLSLLDERTMRDPVHLFNQWEQANRDFHEALISACSSAWTQRFLSILYLQMERYRRLTA 195
Query 182 ------HYAHLQHCSIYNALVNRQAGRAENLMREH--SSVVVL 216
H +H ++ ++ + R A R L+R H SS+ V+
Sbjct 196 MHNRPARNVHEEHLALRDSALARDAERCTELLRMHIESSISVV 238
Lambda K H a alpha
0.320 0.136 0.378 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 501417
Database: a9204a8e28f3f3a70a0008f3f67b956e.SwissProt.fasta
Posted date: Jun 1, 2024 4:57 PM
Number of letters in database: 3,213
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
