BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9b37030504f1bfabb344639e7b4694f4.SwissProt.fasta
           5 sequences; 1,193 total letters



Query= ACIAD1033

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AFK3 Nicotinamide riboside transporter PnuC [Shigella flexneri]     74.3    2e-20
P0AFK2 Nicotinamide riboside transporter PnuC [Escherichia coli (...  74.3    2e-20
P24520 Nicotinamide riboside transporter PnuC [Salmonella typhimu...  70.9    4e-19
D2ZZC1 Nicotinamide riboside transporter PnuC [Neisseria mucosa]      63.9    2e-16
K4REQ6 Riboflavin/roseoflavin transporter RibM [Streptomyces dava...  57.0    3e-14


>P0AFK3 Nicotinamide riboside transporter PnuC [Shigella flexneri]
Length=239

 Score = 74.3 bits (181),  Expect = 2e-20
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query  1    MSPLEIFAVIISVIGVALTIKRNMWCWGFNFLAFILYGYLFFSFKLYGETILQGFFIIIN  60
            +S +E    I  ++ + L     +  + F  +   L+G +FF  +LY   +LQ FF   N
Sbjct  22   LSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAAN  81

Query  61   FYGFYYWLK-GKQTEHEIRI----------------VAIPAKTVIIQ-----------ML  92
             YG+Y W +   Q E E++I                V+I   TV I            M+
Sbjct  82   IYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMI  141

Query  93   LAALGGLIFGLSLKHFTDAAVPMLDSQLAAFSLLATYWTSRKHIATWVLWVFVDIVYVGM  152
            + ALG     + +      A P  DS +   S++A    +RK++  W+LWV ++++ V +
Sbjct  142  MQALG---LQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVI  198

Query  153  FIYKDLYLTAGLYAAFVVMAAFGWWQWEQVKRKQRS  188
            F  + +Y  +  Y     +A  G   W    R++ S
Sbjct  199  FALQGVYAMSLEYIILTFIALNGSRMWINSARERGS  234


>P0AFK2 Nicotinamide riboside transporter PnuC [Escherichia coli 
(strain K12)]
Length=239

 Score = 74.3 bits (181),  Expect = 2e-20
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query  1    MSPLEIFAVIISVIGVALTIKRNMWCWGFNFLAFILYGYLFFSFKLYGETILQGFFIIIN  60
            +S +E    I  ++ + L     +  + F  +   L+G +FF  +LY   +LQ FF   N
Sbjct  22   LSWIEAVGTIAGLLCIGLASLEKISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAAN  81

Query  61   FYGFYYWLK-GKQTEHEIRI----------------VAIPAKTVIIQ-----------ML  92
             YG+Y W +   Q E E++I                V+I   TV I            M+
Sbjct  82   IYGWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMI  141

Query  93   LAALGGLIFGLSLKHFTDAAVPMLDSQLAAFSLLATYWTSRKHIATWVLWVFVDIVYVGM  152
            + ALG     + +      A P  DS +   S++A    +RK++  W+LWV ++++ V +
Sbjct  142  MQALG---LQVVMPELQPDAFPFWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVI  198

Query  153  FIYKDLYLTAGLYAAFVVMAAFGWWQWEQVKRKQRS  188
            F  + +Y  +  Y     +A  G   W    R++ S
Sbjct  199  FALQGVYAMSLEYIILTFIALNGSRMWINSARERGS  234


>P24520 Nicotinamide riboside transporter PnuC [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=239

 Score = 70.9 bits (172),  Expect = 4e-19
 Identities = 51/213 (24%), Positives = 93/213 (44%), Gaps = 25/213 (12%)

Query  1    MSPLEIFAVIISVIGVALTIKRNMWCWGFNFLAFILYGYLFFSFKLYGETILQGFFIIIN  60
            +S +E    I  ++ + L     +  + F  +   L+  +FF  +LY   +LQ FF   N
Sbjct  22   LSWIEAVGTIAGLLCIWLASLEKISNYFFGLVNVTLFAIIFFQIQLYASLLLQLFFFAAN  81

Query  61   FYGFYYW---LKGKQTEHEIR--------------IVAI--------PAKTVIIQMLLAA  95
             YG+Y W    K  Q E +IR              ++AI        P   V+ ++ +A 
Sbjct  82   IYGWYAWSRQTKDNQAELKIRWLPLPKAMAWLAICVIAIGLMTRYIDPVFAVLTRVAVAI  141

Query  96   LGGLIFGLSLKHFTDAAVPMLDSQLAAFSLLATYWTSRKHIATWVLWVFVDIVYVGMFIY  155
            +  L   +++      A P  DS +   S++A    +RK++  W+LWV ++++ V +F  
Sbjct  142  MQMLGLQVTMPVLQPDAFPFWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFAL  201

Query  156  KDLYLTAGLYAAFVVMAAFGWWQWEQVKRKQRS  188
            + +Y  +  Y     +A  G   W    R++ S
Sbjct  202  QGVYAMSLEYLILTFIAVNGSRLWINSARERGS  234


 Score = 24.3 bits (51),  Expect = 0.005
 Identities = 13/66 (20%), Positives = 28/66 (42%), Gaps = 0/66 (0%)

Query  125  LLATYWTSRKHIATWVLWVFVDIVYVGMFIYKDLYLTAGLYAAFVVMAAFGWWQWEQVKR  184
            LL  +  S + I+ +   +    ++  +F    LY +  L   F     +GW+ W +  +
Sbjct  34   LLCIWLASLEKISNYFFGLVNVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQTK  93

Query  185  KQRSGL  190
              ++ L
Sbjct  94   DNQAEL  99


>D2ZZC1 Nicotinamide riboside transporter PnuC [Neisseria mucosa]
Length=263

 Score = 63.9 bits (154),  Expect = 2e-16
 Identities = 41/189 (22%), Positives = 86/189 (46%), Gaps = 11/189 (6%)

Query  8    AVIISVIGVALTIKRNMWCWGFNFLAFILYGYLFFSFKLYGETILQGF-FIIINFYGFYY  66
            A +  ++ V    K  +  + F  ++  LY Y+ ++FKLYGE +L    ++ + F GF  
Sbjct  71   AAVTGILCVVFVGKGKISNYLFGLISVSLYAYVSYTFKLYGEMMLNLLVYVPVQFVGFAM  130

Query  67   WLKGKQTEHEIRIVAIPAKTVIIQMLLAALGGLIFGLSL----KHFTDAAVPMLDSQLAA  122
            W K            + AK + ++  L  +   + G S+     H   +A+P LD     
Sbjct  131  WRKHMALGETAETEEVKAKALTVRQWLLVVAASVVGTSVYIEWLHHLGSALPTLDGVTVV  190

Query  123  FSLLATYWTSRKHIATWVLWVFVDIVYVGMFI---YKDLYLTAGL---YAAFVVMAAFGW  176
             S++A      ++   W LW+ V+I+ + ++    +K+   +  L   Y  ++  + +G+
Sbjct  191  VSIVAQVLMILRYREQWALWIVVNILTISLWAVAWFKNGETSLPLLLMYVMYLCNSVYGY  250

Query  177  WQWEQVKRK  185
              W ++ ++
Sbjct  251  INWTKLVKR  259


>K4REQ6 Riboflavin/roseoflavin transporter RibM [Streptomyces 
davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)]
Length=213

 Score = 57.0 bits (136),  Expect = 3e-14
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query  10   IISVIGVALTIKRNMWCWGFNFLA-FILYGYLFFSFKLYGETILQGFFIIINFYGFYYWL  68
            I+ +I +AL  +R++W W   FL+  +L+G   F   L G    Q   + +  YG+Y W 
Sbjct  25   ILGLITLALGFRRSLWTWPVQFLSGLVLFGA--FYGHLTGSAGKQAVVMAVALYGWYQWN  82

Query  69   KG--KQTEHEIRIVAIPAKTVIIQMLLAALGGLIFGLSLKHFTDAAV-PMLDSQLAAFSL  125
            +G  K  + ++ +           +  AA+G +   L  K +   +  P  D+ +   ++
Sbjct  83   RGTDKAADGKVSVRFATWAERGAMIAAAAVGTVAVALLFKAYPSLSWDPWPDAYIFVGTI  142

Query  126  LATYWTSRKHIATWVLWVFVDIVYVGMFIYKDLYLTAG----LYAAFVVMAAFGWW  177
            +A Y  +R  +  W  W+ VD+V V +  + + Y  +G    +Y A V+     WW
Sbjct  143  VAMYAQARGMVEFWFAWLLVDLVGVPL-NFANGYAFSGFVYVIYGALVLWGMRDWW  197


 Score = 34.7 bits (78),  Expect = 2e-06
 Identities = 18/59 (31%), Positives = 29/59 (49%), Gaps = 1/59 (2%)

Query  133  RKHIATWVLWVFVDIVYVGMFIYKDLYLTAGLYAAFVVMAAFGWWQWEQVKRKQRSGLI  191
            R+ + TW +     +V  G F Y  L  +AG  A  + +A +GW+QW +   K   G +
Sbjct  36   RRSLWTWPVQFLSGLVLFGAF-YGHLTGSAGKQAVVMAVALYGWYQWNRGTDKAADGKV  93



Lambda      K        H        a         alpha
   0.336    0.147    0.492    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 165280


  Database: 9b37030504f1bfabb344639e7b4694f4.SwissProt.fasta
    Posted date:  May 8, 2024  4:50 PM
  Number of letters in database: 1,193
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40